RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 PRKAR2AP13861 404 aaKnown RBP14.3□□□□□ -0.12
CLIP3-204ENST00000590559 USP5P45974 858 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 PLCD1P51178 756 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 CACNB2Q08289 660 aaPredicted RBP14.3□□□□□ -0.12
CLIP3-204ENST00000590559 MAP3K12Q12852 859 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 LHX8Q68G74 356 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 CATSPERGQ6ZRH7 1159 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 ERC1Q8IUD2 1116 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 TRMT44Q8IYL2 757 aaKnown RBP14.3□□□□□ -0.12
CLIP3-204ENST00000590559 PANK1Q8TE04 598 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 TRIM34Q9BYJ4 488 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 NBPF3Q9H094 633 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 RABGAP1Q9Y3P9 1069 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 MYH7P12883 1935 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 PFASO15067 1338 aa14.3□□□□□ -0.12
CLIP3-204ENST00000590559 TCRBV5S4A2TA0A5A2 114 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 USP17L15C9J2P7 530 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 USP17L13C9JLJ4 530 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 USP17L11C9JVI0 530 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 USP17L18D6R9N7 530 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 USP17L22D6RA61 530 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 USP17L17D6RBQ6 530 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 USP17L19D6RCP7 530 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 USP17L20D6RJB6 530 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 SOX1O00570 391 aaPredicted RBP14.29□□□□□ -0.12
CLIP3-204ENST00000590559 USP17L24Q0WX57 530 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 CCL14Q16627 93 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 PLEKHH3Q7Z736 793 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 TTC6Q86TZ1 520 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 AACSQ86V21 672 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 MIER1Q8N108 512 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 RHPN1Q8TCX5 695 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 ACER1Q8TDN7 264 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.29□□□□□ -0.12
CLIP3-204ENST00000590559 STAP2Q9UGK3 403 aa14.29□□□□□ -0.12
CLIP3-204ENST00000590559 BAZ2AQ9UIF9 1905 aaKnown RBP14.29□□□□□ -0.12
CLIP3-204ENST00000590559 EYSQ5T1H1 3165 aa14.28□□□□□ -0.12
CLIP3-204ENST00000590559 VCAM1P19320 739 aa14.28□□□□□ -0.12
CLIP3-204ENST00000590559 USP14P54578 494 aa14.28□□□□□ -0.12
CLIP3-204ENST00000590559 EVX2Q03828 476 aa14.28□□□□□ -0.12
CLIP3-204ENST00000590559 ABCB5Q2M3G0 1257 aa14.28□□□□□ -0.12
CLIP3-204ENST00000590559 CERKLQ49MI3 558 aaPredicted RBP14.28□□□□□ -0.12
CLIP3-204ENST00000590559 ZBED9Q6R2W3 1325 aa14.28□□□□□ -0.12
CLIP3-204ENST00000590559 SIRT2Q8IXJ6 389 aa14.28□□□□□ -0.12
CLIP3-204ENST00000590559 APBA2Q99767 749 aa14.28□□□□□ -0.12
CLIP3-204ENST00000590559 PAGR1Q9BTK6 254 aa14.28□□□□□ -0.12
CLIP3-204ENST00000590559 C11orf49Q9H6J7 331 aa14.28□□□□□ -0.12
CLIP3-204ENST00000590559 HOXC6P09630 235 aa14.27□□□□□ -0.13
CLIP3-204ENST00000590559 PDE6AP16499 860 aa14.27□□□□□ -0.13
CLIP3-204ENST00000590559 ZKSCAN1P17029 563 aaPredicted RBP14.27□□□□□ -0.13
CLIP3-204ENST00000590559 CCND3P30281 292 aaPredicted RBP14.27□□□□□ -0.13
CLIP3-204ENST00000590559 RGS2P41220 211 aa14.27□□□□□ -0.13
CLIP3-204ENST00000590559 MAP2K5Q13163 448 aa14.27□□□□□ -0.13
CLIP3-204ENST00000590559 PDE3AQ14432 1141 aa14.27□□□□□ -0.13
CLIP3-204ENST00000590559 TTF1Q15361 905 aaPredicted RBP14.27□□□□□ -0.13
CLIP3-204ENST00000590559 HSP90AB4PQ58FF6 505 aa14.27□□□□□ -0.13
CLIP3-204ENST00000590559 IL1RAPL2Q9NP60 686 aa14.27□□□□□ -0.13
CLIP3-204ENST00000590559 FLRT1Q9NZU1 646 aa14.27□□□□□ -0.13
CLIP3-204ENST00000590559 BTBD7Q9P203 1132 aa14.27□□□□□ -0.13
CLIP3-204ENST00000590559 ZNFX1Q9P2E3 1918 aaKnown RBP14.27□□□□□ -0.13
CLIP3-204ENST00000590559 MAGEB6P1A0A0J9YX57 407 aa14.26□□□□□ -0.13
CLIP3-204ENST00000590559 A0A1W2PRG0 241 aa14.26□□□□□ -0.13
CLIP3-204ENST00000590559 SPDYE16A6NNV3 312 aaPredicted RBP14.26□□□□□ -0.13
CLIP3-204ENST00000590559 PTPREP23469 700 aa14.26□□□□□ -0.13
CLIP3-204ENST00000590559 RAB3GAP1Q15042 981 aa14.26□□□□□ -0.13
CLIP3-204ENST00000590559 ZYXQ15942 572 aaKnown RBP14.26□□□□□ -0.13
CLIP3-204ENST00000590559 C7orf61Q8IZ16 206 aa14.26□□□□□ -0.13
CLIP3-204ENST00000590559 ZBTB40Q9NUA8 1239 aa14.26□□□□□ -0.13
CLIP3-204ENST00000590559 COL11A1P12107 1806 aaPredicted RBP14.25□□□□□ -0.13
CLIP3-204ENST00000590559 ZNF532Q9HCE3 1301 aa14.25□□□□□ -0.13
CLIP3-204ENST00000590559 SLC15A5A6NIM6 579 aa14.25□□□□□ -0.13
CLIP3-204ENST00000590559 GRB14Q14449 540 aa14.25□□□□□ -0.13
CLIP3-204ENST00000590559 SEPT2Q15019 361 aa14.25□□□□□ -0.13
CLIP3-204ENST00000590559 SLC9C2Q5TAH2 1124 aa14.25□□□□□ -0.13
CLIP3-204ENST00000590559 SIAH1Q8IUQ4 282 aa14.25□□□□□ -0.13
CLIP3-204ENST00000590559 RPAP2Q8IXW5 612 aaPredicted RBP14.25□□□□□ -0.13
CLIP3-204ENST00000590559 KIF1BPQ96EK5 621 aa14.25□□□□□ -0.13
CLIP3-204ENST00000590559 EDC3Q96F86 508 aaKnown RBP14.25□□□□□ -0.13
CLIP3-204ENST00000590559 LRCH3Q96II8 777 aa14.25□□□□□ -0.13
CLIP3-204ENST00000590559 DCP1AQ9NPI6 582 aaPredicted RBP14.25□□□□□ -0.13
CLIP3-204ENST00000590559 GREB1LQ9C091 1923 aaPredicted RBP14.25□□□□□ -0.13
CLIP3-204ENST00000590559 CCNA1P78396 465 aa14.24□□□□□ -0.13
CLIP3-204ENST00000590559 KIAA1755Q5JYT7 1200 aa14.24□□□□□ -0.13
CLIP3-204ENST00000590559 GPR153Q6NV75 609 aa14.24□□□□□ -0.13
CLIP3-204ENST00000590559 LCORLQ8N3X6 602 aa14.24□□□□□ -0.13
CLIP3-204ENST00000590559 FEZ1Q99689 392 aa14.24□□□□□ -0.13
CLIP3-204ENST00000590559 CRNKL1Q9BZJ0 848 aaKnown RBP14.24□□□□□ -0.13
CLIP3-204ENST00000590559 RPAP3Q9H6T3 665 aaPredicted RBP14.24□□□□□ -0.13
CLIP3-204ENST00000590559 CABP5Q9NP86 173 aa14.24□□□□□ -0.13
CLIP3-204ENST00000590559 ZMYND8Q9ULU4 1186 aaPredicted RBP14.24□□□□□ -0.13
CLIP3-204ENST00000590559 POLR3DP05423 398 aaPredicted RBP14.23□□□□□ -0.13
CLIP3-204ENST00000590559 MAGEA10P43363 369 aaPredicted RBP14.23□□□□□ -0.13
CLIP3-204ENST00000590559 LRRC26Q2I0M4 334 aa14.23□□□□□ -0.13
CLIP3-204ENST00000590559 CLASRPQ8N2M8 674 aaKnown RBP14.23□□□□□ -0.13
CLIP3-204ENST00000590559 NPLOC4Q8TAT6 608 aa14.23□□□□□ -0.13
CLIP3-204ENST00000590559 SDR42E1Q8WUS8 393 aa14.23□□□□□ -0.13
CLIP3-204ENST00000590559 MCM9Q9NXL9 1143 aa14.23□□□□□ -0.13
CLIP3-204ENST00000590559 LTBP2Q14767 1821 aa14.22□□□□□ -0.13
CLIP3-204ENST00000590559 GOLIM4O00461 696 aa14.22□□□□□ -0.13
CLIP3-204ENST00000590559 GLRX3O76003 335 aaKnown RBP14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms