RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 PAGR1Q9BTK6 254 aa17.03■□□□□ 0.32
VMP1-209ENST00000588915 C1orf115Q9H7X2 142 aa17.03■□□□□ 0.32
VMP1-209ENST00000588915 CABP5Q9NP86 173 aa17.03■□□□□ 0.32
VMP1-209ENST00000588915 TLR7Q9NYK1 1049 aaKnown RBP17.03■□□□□ 0.32
VMP1-209ENST00000588915 ALPK3Q96L96 1907 aa17.03■□□□□ 0.32
VMP1-209ENST00000588915 MYO5AQ9Y4I1 1855 aaKnown RBP17.03■□□□□ 0.32
VMP1-209ENST00000588915 COL6A1P12109 1028 aa17.02■□□□□ 0.32
VMP1-209ENST00000588915 HSP90AB4PQ58FF6 505 aa17.02■□□□□ 0.32
VMP1-209ENST00000588915 LHX8Q68G74 356 aa17.02■□□□□ 0.32
VMP1-209ENST00000588915 POTEEQ6S8J3 1075 aa17.02■□□□□ 0.32
VMP1-209ENST00000588915 EDC3Q96F86 508 aaKnown RBP17.02■□□□□ 0.32
VMP1-209ENST00000588915 FEZ1Q99689 392 aa17.02■□□□□ 0.32
VMP1-209ENST00000588915 SOX1O00570 391 aaPredicted RBP17.01■□□□□ 0.31
VMP1-209ENST00000588915 PEX10O60683 326 aa17.01■□□□□ 0.31
VMP1-209ENST00000588915 MAP2K5Q13163 448 aa17.01■□□□□ 0.31
VMP1-209ENST00000588915 TTF1Q15361 905 aaPredicted RBP17.01■□□□□ 0.31
VMP1-209ENST00000588915 ABCB5Q2M3G0 1257 aa17.01■□□□□ 0.31
VMP1-209ENST00000588915 LRIT3Q3SXY7 679 aa17.01■□□□□ 0.31
VMP1-209ENST00000588915 CEP85Q6P2H3 762 aa17.01■□□□□ 0.31
VMP1-209ENST00000588915 CWC22Q9HCG8 908 aaKnown RBP17.01■□□□□ 0.31
VMP1-209ENST00000588915 ZMYND8Q9ULU4 1186 aaPredicted RBP17.01■□□□□ 0.31
VMP1-209ENST00000588915 MYH1P12882 1939 aa17.01■□□□□ 0.31
VMP1-209ENST00000588915 SLC15A5A6NIM6 579 aa17■□□□□ 0.31
VMP1-209ENST00000588915 CNMDO75829 334 aa17■□□□□ 0.31
VMP1-209ENST00000588915 HOXC6P09630 235 aa17■□□□□ 0.31
VMP1-209ENST00000588915 PTPREP23469 700 aa17■□□□□ 0.31
VMP1-209ENST00000588915 RAB3GAP1Q15042 981 aa17■□□□□ 0.31
VMP1-209ENST00000588915 MFSD14CQ5VZR4 134 aa17■□□□□ 0.31
VMP1-209ENST00000588915 RIOK1Q9BRS2 568 aaKnown RBP17■□□□□ 0.31
VMP1-209ENST00000588915 PFASO15067 1338 aa16.99■□□□□ 0.31
VMP1-209ENST00000588915 DDX60LQ5H9U9 1706 aaKnown RBP16.99■□□□□ 0.31
VMP1-209ENST00000588915 LAMA3Q16787 3333 aa16.99■□□□□ 0.31
VMP1-209ENST00000588915 MSCO60682 206 aa16.99■□□□□ 0.31
VMP1-209ENST00000588915 RLBP1P12271 317 aa16.99■□□□□ 0.31
VMP1-209ENST00000588915 VCAM1P19320 739 aa16.99■□□□□ 0.31
VMP1-209ENST00000588915 GABPAQ06546 454 aa16.99■□□□□ 0.31
VMP1-209ENST00000588915 CCL14Q16627 93 aa16.99■□□□□ 0.31
VMP1-209ENST00000588915 AACSQ86V21 672 aa16.99■□□□□ 0.31
VMP1-209ENST00000588915 TDHQ8IZJ6 230 aa16.99■□□□□ 0.31
VMP1-209ENST00000588915 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.99■□□□□ 0.31
VMP1-209ENST00000588915 LRCH3Q96II8 777 aa16.99■□□□□ 0.31
VMP1-209ENST00000588915 ANTXR1Q9H6X2 564 aa16.99■□□□□ 0.31
VMP1-209ENST00000588915 POLR3DP05423 398 aaPredicted RBP16.98■□□□□ 0.31
VMP1-209ENST00000588915 CCND3P30281 292 aaPredicted RBP16.98■□□□□ 0.31
VMP1-209ENST00000588915 SHMT1P34896 483 aa16.98■□□□□ 0.31
VMP1-209ENST00000588915 MAGEA10P43363 369 aaPredicted RBP16.98■□□□□ 0.31
VMP1-209ENST00000588915 PLCD1P51178 756 aa16.98■□□□□ 0.31
VMP1-209ENST00000588915 CRNKL1Q9BZJ0 848 aaKnown RBP16.98■□□□□ 0.31
VMP1-209ENST00000588915 HOXC10Q9NYD6 342 aa16.98■□□□□ 0.31
VMP1-209ENST00000588915 IVNS1ABPQ9Y6Y0 642 aa16.98■□□□□ 0.31
VMP1-209ENST00000588915 MAGEB6P1A0A0J9YX57 407 aa16.97■□□□□ 0.31
VMP1-209ENST00000588915 STRNO43815 780 aa16.97■□□□□ 0.31
VMP1-209ENST00000588915 MS4A1P11836 297 aa16.97■□□□□ 0.31
VMP1-209ENST00000588915 GRB14Q14449 540 aa16.97■□□□□ 0.31
VMP1-209ENST00000588915 ZYXQ15942 572 aaKnown RBP16.97■□□□□ 0.31
VMP1-209ENST00000588915 SLC17A8Q8NDX2 589 aa16.97■□□□□ 0.31
VMP1-209ENST00000588915 ACER1Q8TDN7 264 aa16.97■□□□□ 0.31
VMP1-209ENST00000588915 EXOC6BQ9Y2D4 811 aa16.97■□□□□ 0.31
VMP1-209ENST00000588915 NDUFB9Q9Y6M9 179 aa16.97■□□□□ 0.31
VMP1-209ENST00000588915 SPDYE16A6NNV3 312 aaPredicted RBP16.96■□□□□ 0.31
VMP1-209ENST00000588915 SYN1P17600 705 aa16.96■□□□□ 0.31
VMP1-209ENST00000588915 GUCY1A2P33402 732 aa16.96■□□□□ 0.31
VMP1-209ENST00000588915 HNRNPUQ00839 825 aaKnown RBP eCLIP16.96■□□□□ 0.31
VMP1-209ENST00000588915 ATP2B2Q01814 1243 aa16.96■□□□□ 0.31
VMP1-209ENST00000588915 COG2Q14746 738 aa16.96■□□□□ 0.31
VMP1-209ENST00000588915 SLC9C2Q5TAH2 1124 aa16.96■□□□□ 0.31
VMP1-209ENST00000588915 CLASRPQ8N2M8 674 aaKnown RBP16.96■□□□□ 0.31
VMP1-209ENST00000588915 RHPN1Q8TCX5 695 aa16.96■□□□□ 0.31
VMP1-209ENST00000588915 LPAR1Q92633 364 aa16.96■□□□□ 0.31
VMP1-209ENST00000588915 RPAP3Q9H6T3 665 aaPredicted RBP16.96■□□□□ 0.31
VMP1-209ENST00000588915 BTBD7Q9P203 1132 aa16.96■□□□□ 0.31
VMP1-209ENST00000588915 IGHA2P01877 340 aa16.95■□□□□ 0.3
VMP1-209ENST00000588915 WDR78Q5VTH9 848 aa16.95■□□□□ 0.3
VMP1-209ENST00000588915 RPAP2Q8IXW5 612 aaPredicted RBP16.95■□□□□ 0.3
VMP1-209ENST00000588915 SHCBP1Q8NEM2 672 aa16.95■□□□□ 0.3
VMP1-209ENST00000588915 KIF1BPQ96EK5 621 aa16.95■□□□□ 0.3
VMP1-209ENST00000588915 UBE2OQ9C0C9 1292 aaKnown RBP16.95■□□□□ 0.3
VMP1-209ENST00000588915 SWAP70Q9UH65 585 aa16.95■□□□□ 0.3
VMP1-209ENST00000588915 DDX20Q9UHI6 824 aaKnown RBP16.95■□□□□ 0.3
VMP1-209ENST00000588915 PDE6AP16499 860 aa16.94■□□□□ 0.3
VMP1-209ENST00000588915 SEPT2Q15019 361 aa16.94■□□□□ 0.3
VMP1-209ENST00000588915 LRRC26Q2I0M4 334 aa16.94■□□□□ 0.3
VMP1-209ENST00000588915 OLFML2BQ68BL8 750 aa16.94■□□□□ 0.3
VMP1-209ENST00000588915 MB21D1Q8N884 522 aa16.94■□□□□ 0.3
VMP1-209ENST00000588915 DCP1AQ9NPI6 582 aaPredicted RBP16.94■□□□□ 0.3
VMP1-209ENST00000588915 MCM9Q9NXL9 1143 aa16.94■□□□□ 0.3
VMP1-209ENST00000588915 FLRT1Q9NZU1 646 aa16.94■□□□□ 0.3
VMP1-209ENST00000588915 DNM1LO00429 736 aa16.93■□□□□ 0.3
VMP1-209ENST00000588915 HMMRO75330 724 aa16.93■□□□□ 0.3
VMP1-209ENST00000588915 TMEM179Q6ZVK1 233 aa16.93■□□□□ 0.3
VMP1-209ENST00000588915 DEFB123Q8N688 67 aa16.93■□□□□ 0.3
VMP1-209ENST00000588915 NPLOC4Q8TAT6 608 aa16.93■□□□□ 0.3
VMP1-209ENST00000588915 IL1RAPL2Q9NP60 686 aa16.93■□□□□ 0.3
VMP1-209ENST00000588915 SLC5A4Q9NY91 659 aa16.93■□□□□ 0.3
VMP1-209ENST00000588915 ZNF532Q9HCE3 1301 aa16.93■□□□□ 0.3
VMP1-209ENST00000588915 A0A1W2PRG0 241 aa16.92■□□□□ 0.3
VMP1-209ENST00000588915 TCRBV5S4A2TA0A5A2 114 aa16.92■□□□□ 0.3
VMP1-209ENST00000588915 MPHOSPH10O00566 681 aaKnown RBP16.92■□□□□ 0.3
VMP1-209ENST00000588915 RAB11FIP3O75154 756 aa16.92■□□□□ 0.3
VMP1-209ENST00000588915 DPP9Q86TI2 863 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms