RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 TAOK3Q9H2K8 898 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 PAG1Q9NWQ8 432 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 DENND2AQ9ULE3 1009 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 NOD1Q9Y239 953 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 DUOX1Q9NRD9 1551 aa6.42□□□□□ -1.38
LIG3-210ENST00000588109 FIGNL2A6NMB9 653 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 PIK3CDO00329 1044 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 GNRH1P01148 92 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 SDSP20132 328 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 MCAMP43121 646 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 ZAP70P43403 619 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 RASGRF1Q13972 1273 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 TTF1Q15361 905 aaPredicted RBP6.41□□□□□ -1.38
LIG3-210ENST00000588109 AOC3Q16853 763 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 LRRFIP1Q32MZ4 808 aaKnown RBP6.41□□□□□ -1.38
LIG3-210ENST00000588109 PI16Q6UXB8 463 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 ARHGAP27Q6ZUM4 889 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 LARGE2Q8N3Y3 721 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 PSMD1Q99460 953 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 COA1Q9GZY4 146 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 DBNDD1Q9H9R9 158 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 CD209Q9NNX6 404 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 ZNF277Q9NRM2 450 aaPredicted RBP6.41□□□□□ -1.38
LIG3-210ENST00000588109 HMG20BQ9P0W2 317 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 JAG2Q9Y219 1238 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 IRS2Q9Y4H2 1338 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 ARFGEF1Q9Y6D6 1849 aa6.41□□□□□ -1.38
LIG3-210ENST00000588109 AK9Q5TCS8 1911 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 MYH13Q9UKX3 1938 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 A0A1W2PRU2 124 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 ECE2O60344 883 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 CDC45O75419 566 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 IDH1O75874 414 aaKnown RBP6.4□□□□□ -1.38
LIG3-210ENST00000588109 IARSP41252 1262 aaKnown RBP6.4□□□□□ -1.38
LIG3-210ENST00000588109 KIAA2012Q0VF49 1180 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 GPR162Q16538 588 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 NIM1KQ8IY84 436 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 ZGPATQ8N5A5 531 aaKnown RBP6.4□□□□□ -1.38
LIG3-210ENST00000588109 TDRD7Q8NHU6 1098 aaKnown RBP6.4□□□□□ -1.38
LIG3-210ENST00000588109 WDR66Q8TBY9 1149 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 ADAMTS19Q8TE59 1207 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 JDP2Q8WYK2 163 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 EDC3Q96F86 508 aaKnown RBP6.4□□□□□ -1.38
LIG3-210ENST00000588109 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.4□□□□□ -1.38
LIG3-210ENST00000588109 DIAPH3Q9NSV4 1193 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 RAI14Q9P0K7 980 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 LRP2BPQ9P2M1 347 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 ABCF2Q9UG63 623 aa6.4□□□□□ -1.38
LIG3-210ENST00000588109 RBM19Q9Y4C8 960 aaKnown RBP6.4□□□□□ -1.38
LIG3-210ENST00000588109 SNED1Q8TER0 1413 aa6.4□□□□□ -1.39
LIG3-210ENST00000588109 USP17L5A8MUK1 530 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 NFKBIEO00221 500 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 HIP1O00291 1037 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 ATP9BO43861 1147 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 CYP2E1P05181 493 aaPredicted RBP6.39□□□□□ -1.39
LIG3-210ENST00000588109 IL1R1P14778 569 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 GTF2IP78347 998 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 RASSF7Q02833 373 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 MAP3K12Q12852 859 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.39□□□□□ -1.39
LIG3-210ENST00000588109 SPTY2D1Q68D10 685 aaPredicted RBP6.39□□□□□ -1.39
LIG3-210ENST00000588109 ZSCAN25Q6NSZ9 544 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 TBC1D9Q6ZT07 1266 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 PODNQ7Z5L7 613 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 TRIM50Q86XT4 487 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 DEPDC4Q8N2C3 294 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 KBTBD3Q8NAB2 608 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 VPS33BQ9H267 617 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 ANTXR1Q9H6X2 564 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 ARHGEF10LQ9HCE6 1279 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 PIH1D3Q9NQM4 214 aaKnown RBP6.39□□□□□ -1.39
LIG3-210ENST00000588109 TFIP11Q9UBB9 837 aaKnown RBP6.39□□□□□ -1.39
LIG3-210ENST00000588109 PDS5AQ29RF7 1337 aaKnown RBP6.39□□□□□ -1.39
LIG3-210ENST00000588109 COL1A1P02452 1464 aaPredicted RBP6.39□□□□□ -1.39
LIG3-210ENST00000588109 FER1L6Q2WGJ9 1857 aa6.39□□□□□ -1.39
LIG3-210ENST00000588109 AKAP11Q9UKA4 1901 aa6.38□□□□□ -1.39
LIG3-210ENST00000588109 EIF5BO60841 1220 aaKnown RBP6.38□□□□□ -1.39
LIG3-210ENST00000588109 LDHBP07195 334 aaKnown RBP6.38□□□□□ -1.39
LIG3-210ENST00000588109 ZFYP08048 801 aaPredicted RBP6.38□□□□□ -1.39
LIG3-210ENST00000588109 YBX3P16989 372 aaKnown RBP eCLIP6.38□□□□□ -1.391e-6■■□□□ 11.7
LIG3-210ENST00000588109 CTSOP43234 321 aaPredicted RBP6.38□□□□□ -1.39
LIG3-210ENST00000588109 NCOA4Q13772 614 aa6.38□□□□□ -1.39
LIG3-210ENST00000588109 MFSD14BQ5SR56 506 aa6.38□□□□□ -1.39
LIG3-210ENST00000588109 SLC9C2Q5TAH2 1124 aa6.38□□□□□ -1.39
LIG3-210ENST00000588109 TTLL5Q6EMB2 1281 aa6.38□□□□□ -1.39
LIG3-210ENST00000588109 CWC27Q6UX04 472 aaKnown RBP6.38□□□□□ -1.39
LIG3-210ENST00000588109 DZIP1Q86YF9 867 aaKnown RBP6.38□□□□□ -1.39
LIG3-210ENST00000588109 MAGEB6Q8N7X4 407 aa6.38□□□□□ -1.39
LIG3-210ENST00000588109 TBC1D22AQ8WUA7 517 aa6.38□□□□□ -1.39
LIG3-210ENST00000588109 RUFY2Q8WXA3 655 aa6.38□□□□□ -1.39
LIG3-210ENST00000588109 ZNRF3Q9ULT6 936 aa6.38□□□□□ -1.39
LIG3-210ENST00000588109 LTBP3Q9NS15 1303 aa6.38□□□□□ -1.39
LIG3-210ENST00000588109 RFX7Q2KHR2 1363 aa6.38□□□□□ -1.39
LIG3-210ENST00000588109 FAM205AQ6ZU69 1335 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 SALL1Q9NSC2 1324 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 USP17L3A6NCW0 530 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 USP17L4A6NCW7 530 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 SOBPA7XYQ1 873 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 F8W031 263 aaPredicted RBP6.37□□□□□ -1.39
LIG3-210ENST00000588109 RNF113AO15541 343 aaKnown RBP6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms