RNA–Protein interactions for RNA: ENST00000585163.5

CDK5RAP3-237, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,519 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-237ENST00000585163 CASQ1P31415 396 aa16.18■□□□□ 0.18
CDK5RAP3-237ENST00000585163 PARP10Q53GL7 1025 aa16.18■□□□□ 0.18
CDK5RAP3-237ENST00000585163 INTS5Q6P9B9 1019 aaKnown RBP16.18■□□□□ 0.18
CDK5RAP3-237ENST00000585163 APTXQ7Z2E3 356 aaKnown RBP16.18■□□□□ 0.18
CDK5RAP3-237ENST00000585163 SH3RF1Q7Z6J0 888 aa16.18■□□□□ 0.18
CDK5RAP3-237ENST00000585163 ENAHQ8N8S7 591 aaPredicted RBP16.18■□□□□ 0.18
CDK5RAP3-237ENST00000585163 DHX58Q96C10 678 aa16.18■□□□□ 0.18
CDK5RAP3-237ENST00000585163 EPSTI1Q96J88 318 aa16.18■□□□□ 0.18
CDK5RAP3-237ENST00000585163 VPS54Q9P1Q0 977 aa16.18■□□□□ 0.18
CDK5RAP3-237ENST00000585163 PRPF3O43395 683 aaKnown RBP16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 KRT2P35908 639 aa16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 ZNF804BA4D1E1 1349 aa16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 MAGEB6P1A0A0J9YX57 407 aa16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 EARS2Q5JPH6 523 aaKnown RBP16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 SPATA1Q5VX52 437 aa16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 TMCO3Q6UWJ1 677 aa16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 FERMT2Q96AC1 680 aa16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 KIFC2Q96AC6 838 aa16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 PANX2Q96RD6 677 aa16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 ZSCAN10Q96SZ4 725 aaPredicted RBP16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 CCDC87Q9NVE4 849 aa16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 MRFAP1Q9Y605 127 aa16.17■□□□□ 0.18
CDK5RAP3-237ENST00000585163 PHLPP1O60346 1717 aa16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 SMIM22K7EJ46 135 aa16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 BMP15O95972 392 aa16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 FAM193AP78312 1265 aa16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 CUL4BQ13620 913 aa16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 PAGE5Q96GU1 130 aa16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 RIOK1Q9BRS2 568 aaKnown RBP16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 ST7Q9NRC1 585 aa16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 AKR1B15C9JRZ8 316 aaPredicted RBP16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 CAMTA2O94983 1202 aa16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 NTSR2O95665 410 aa16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 SYMPKQ92797 1274 aaKnown RBP16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 GSDMAQ96QA5 445 aa16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 ABCF2Q9UG63 623 aa16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 IQSEC3Q9UPP2 1182 aaPredicted RBP16.16■□□□□ 0.18
CDK5RAP3-237ENST00000585163 TEX33O43247 280 aa16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 CD44P16070 742 aaKnown RBP16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 AFMP43652 599 aa16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 CDKAL1Q5VV42 579 aa16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 RBM28Q9NW13 759 aaKnown RBP16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 V9GY48 417 aaPredicted RBP16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 SYNRGQ9UMZ2 1314 aa16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 DUOX1Q9NRD9 1551 aa16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 MYH2Q9UKX2 1941 aa16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 PBX1P40424 430 aa16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 TROAPQ12815 778 aa16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 DPYDQ12882 1025 aa16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 IFIT1BQ5T764 474 aaKnown RBP16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 CATIPQ7Z7H3 387 aa16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 DESI2Q9BSY9 194 aa16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 ADD3Q9UEY8 706 aaKnown RBP16.15■□□□□ 0.18
CDK5RAP3-237ENST00000585163 LAMB2P55268 1798 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 PRDM1O75626 825 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 PLEKHA8P1O95397 391 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 FGRP09769 529 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 CCDC175P0C221 793 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 CRKLP46109 303 aaKnown RBP16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 PLA2G4AP47712 749 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 GPR161Q8N6U8 529 aaKnown RBP16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 TNFRSF25Q93038 417 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 NAA15Q9BXJ9 866 aaKnown RBP16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 CICQ96RK0 1608 aaPredicted RBP16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 WNT7AO00755 349 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 PPP2R3AQ06190 1150 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 CACNA1SQ13698 1873 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 MTF1Q14872 753 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 NPY5RQ15761 445 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 RSRC2Q7L4I2 434 aaKnown RBP16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 CREBRFQ8IUR6 639 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 CTAGE1Q96RT6 745 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 BRIP1Q9BX63 1249 aa16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 MRPL44Q9H9J2 332 aaKnown RBP16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 NIP7Q9Y221 180 aaKnown RBP eCLIP16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 ZNF335Q9H4Z2 1342 aaPredicted RBP16.14■□□□□ 0.17
CDK5RAP3-237ENST00000585163 DOT1LQ8TEK3 1739 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 hCG_1642624A0A1W2PR95 340 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 PPP1R3GB7ZBB8 358 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 SEMA3EO15041 775 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 ATP8B1O43520 1251 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 CALM1P0DP23 149 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 CALM2P0DP24 149 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 CALM3P0DP25 149 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 PCP11498 1178 aaKnown RBP16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 KLHL10Q6JEL2 608 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 IQCA1Q86XH1 822 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 IGSF22Q8N9C0 903 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 CDC5LQ99459 802 aaKnown RBP16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 BRMS1Q9HCU9 246 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 GNL3LQ9NVN8 582 aaKnown RBP16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 COL14A1Q05707 1796 aaKnown RBP16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 SOWAHDA6NJG2 315 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 CASP1P29466 404 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 STX17P56962 302 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 RBL2Q08999 1139 aa16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 COL1A1P02452 1464 aaPredicted RBP16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 COL22A1Q8NFW1 1626 aaPredicted RBP16.13■□□□□ 0.17
CDK5RAP3-237ENST00000585163 COL4A1P02462 1669 aa16.12■□□□□ 0.17
CDK5RAP3-237ENST00000585163 GYG1P46976 350 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms