RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 USP17L13C9JLJ4 530 aa26.68■■□□□ 1.86
SHMT1-210ENST00000583780 USP17L11C9JVI0 530 aa26.68■■□□□ 1.86
SHMT1-210ENST00000583780 USP17L18D6R9N7 530 aa26.68■■□□□ 1.86
SHMT1-210ENST00000583780 USP17L22D6RA61 530 aa26.68■■□□□ 1.86
SHMT1-210ENST00000583780 USP17L17D6RBQ6 530 aa26.68■■□□□ 1.86
SHMT1-210ENST00000583780 USP17L19D6RCP7 530 aa26.68■■□□□ 1.86
SHMT1-210ENST00000583780 USP17L20D6RJB6 530 aa26.68■■□□□ 1.86
SHMT1-210ENST00000583780 IPO8O15397 1037 aaKnown RBP26.68■■□□□ 1.86
SHMT1-210ENST00000583780 USP17L24Q0WX57 530 aa26.68■■□□□ 1.86
SHMT1-210ENST00000583780 SSH3Q8TE77 659 aa26.68■■□□□ 1.86
SHMT1-210ENST00000583780 CLUAP1Q96AJ1 413 aa26.68■■□□□ 1.86
SHMT1-210ENST00000583780 UNC80Q8N2C7 3258 aa26.68■■□□□ 1.86
SHMT1-210ENST00000583780 LAMA2P24043 3122 aaKnown RBP26.68■■□□□ 1.86
SHMT1-210ENST00000583780 IGHA2P01877 340 aa26.67■■□□□ 1.86
SHMT1-210ENST00000583780 HLA-DOAP06340 250 aa26.67■■□□□ 1.86
SHMT1-210ENST00000583780 CYP7A1P22680 504 aa26.67■■□□□ 1.86
SHMT1-210ENST00000583780 PTPREP23469 700 aa26.67■■□□□ 1.86
SHMT1-210ENST00000583780 ATP8B2P98198 1209 aa26.67■■□□□ 1.86
SHMT1-210ENST00000583780 SENP6Q9GZR1 1112 aaPredicted RBP26.67■■□□□ 1.86
SHMT1-210ENST00000583780 ZYXQ15942 572 aaKnown RBP26.66■■□□□ 1.86
SHMT1-210ENST00000583780 BTBD7Q9P203 1132 aa26.66■■□□□ 1.86
SHMT1-210ENST00000583780 LBX2Q6XYB7 198 aa26.65■■□□□ 1.86
SHMT1-210ENST00000583780 NPLOC4Q8TAT6 608 aa26.65■■□□□ 1.86
SHMT1-210ENST00000583780 ACER1Q8TDN7 264 aa26.65■■□□□ 1.86
SHMT1-210ENST00000583780 DBNLQ9UJU6 430 aaKnown RBP26.65■■□□□ 1.86
SHMT1-210ENST00000583780 SLC15A5A6NIM6 579 aa26.64■■□□□ 1.86
SHMT1-210ENST00000583780 HOXC6P09630 235 aa26.64■■□□□ 1.86
SHMT1-210ENST00000583780 FAM109BQ6ICB4 259 aaPredicted RBP26.64■■□□□ 1.86
SHMT1-210ENST00000583780 FRAT1Q92837 279 aaPredicted RBP26.64■■□□□ 1.86
SHMT1-210ENST00000583780 KIAA1683Q9H0B3 1180 aa26.64■■□□□ 1.86
SHMT1-210ENST00000583780 SURF6O75683 361 aaKnown RBP26.63■■□□□ 1.85
SHMT1-210ENST00000583780 CCNA1P78396 465 aa26.63■■□□□ 1.85
SHMT1-210ENST00000583780 MFSD14CQ5VZR4 134 aa26.63■■□□□ 1.85
SHMT1-210ENST00000583780 TMEM57Q8N5G2 664 aa26.63■■□□□ 1.85
SHMT1-210ENST00000583780 MIGA1Q8NAN2 632 aa26.63■■□□□ 1.85
SHMT1-210ENST00000583780 TRPV1Q8NER1 839 aa26.63■■□□□ 1.85
SHMT1-210ENST00000583780 GUCD1Q96NT3 240 aa26.63■■□□□ 1.85
SHMT1-210ENST00000583780 EHD4Q9H223 541 aa26.63■■□□□ 1.85
SHMT1-210ENST00000583780 TLR7Q9NYK1 1049 aaKnown RBP26.63■■□□□ 1.85
SHMT1-210ENST00000583780 DDX20Q9UHI6 824 aaKnown RBP26.63■■□□□ 1.85
SHMT1-210ENST00000583780 SERPINB13Q9UIV8 391 aa26.63■■□□□ 1.85
SHMT1-210ENST00000583780 NOP58Q9Y2X3 529 aaKnown RBP26.63■■□□□ 1.85
SHMT1-210ENST00000583780 GLRX3O76003 335 aaKnown RBP26.62■■□□□ 1.85
SHMT1-210ENST00000583780 VCAM1P19320 739 aa26.62■■□□□ 1.85
SHMT1-210ENST00000583780 GUCY1A2P33402 732 aa26.62■■□□□ 1.85
SHMT1-210ENST00000583780 LPAR1Q92633 364 aa26.62■■□□□ 1.85
SHMT1-210ENST00000583780 EAF2Q96CJ1 260 aaPredicted RBP26.62■■□□□ 1.85
SHMT1-210ENST00000583780 CCDC8Q9H0W5 538 aaPredicted RBP26.62■■□□□ 1.85
SHMT1-210ENST00000583780 RLFQ13129 1914 aa26.61■■□□□ 1.85
SHMT1-210ENST00000583780 CYP2C19P33261 490 aa26.61■■□□□ 1.85
SHMT1-210ENST00000583780 USP14P54578 494 aa26.61■■□□□ 1.85
SHMT1-210ENST00000583780 GRB14Q14449 540 aa26.61■■□□□ 1.85
SHMT1-210ENST00000583780 RAB3GAP1Q15042 981 aa26.61■■□□□ 1.85
SHMT1-210ENST00000583780 CERKLQ49MI3 558 aaPredicted RBP26.61■■□□□ 1.85
SHMT1-210ENST00000583780 FEZ1Q99689 392 aa26.61■■□□□ 1.85
SHMT1-210ENST00000583780 CWC22Q9HCG8 908 aaKnown RBP26.61■■□□□ 1.85
SHMT1-210ENST00000583780 USP5P45974 858 aa26.6■■□□□ 1.85
SHMT1-210ENST00000583780 PLCD1P51178 756 aa26.6■■□□□ 1.85
SHMT1-210ENST00000583780 ATP2B2Q01814 1243 aa26.6■■□□□ 1.85
SHMT1-210ENST00000583780 OS9Q13438 667 aaPredicted RBP26.6■■□□□ 1.85
SHMT1-210ENST00000583780 ABCB5Q2M3G0 1257 aa26.6■■□□□ 1.85
SHMT1-210ENST00000583780 WDR78Q5VTH9 848 aa26.6■■□□□ 1.85
SHMT1-210ENST00000583780 COL25A1Q9BXS0 654 aaPredicted RBP26.6■■□□□ 1.85
SHMT1-210ENST00000583780 ANTXR1Q9H6X2 564 aa26.6■■□□□ 1.85
SHMT1-210ENST00000583780 SPDYE16A6NNV3 312 aaPredicted RBP26.59■■□□□ 1.85
SHMT1-210ENST00000583780 IDH1O75874 414 aaKnown RBP26.59■■□□□ 1.85
SHMT1-210ENST00000583780 CNGA1P29973 690 aa26.59■■□□□ 1.85
SHMT1-210ENST00000583780 SHMT1P34896 483 aa26.59■■□□□ 1.85
SHMT1-210ENST00000583780 ATN1P54259 1190 aaPredicted RBP26.59■■□□□ 1.85
SHMT1-210ENST00000583780 MAGEB6Q8N7X4 407 aa26.59■■□□□ 1.85
SHMT1-210ENST00000583780 MSCO60682 206 aa26.58■■□□□ 1.85
SHMT1-210ENST00000583780 TTC6Q86TZ1 520 aa26.58■■□□□ 1.85
SHMT1-210ENST00000583780 DNM1LO00429 736 aa26.57■■□□□ 1.84
SHMT1-210ENST00000583780 LBHD1Q9BQE6 289 aaPredicted RBP26.57■■□□□ 1.84
SHMT1-210ENST00000583780 RPAP3Q9H6T3 665 aaPredicted RBP26.57■■□□□ 1.84
SHMT1-210ENST00000583780 C1orf115Q9H7X2 142 aa26.57■■□□□ 1.84
SHMT1-210ENST00000583780 LTBP2Q14767 1821 aa26.57■■□□□ 1.84
SHMT1-210ENST00000583780 SMCHD1A6NHR9 2005 aa26.56■■□□□ 1.84
SHMT1-210ENST00000583780 CYBAP13498 195 aa26.56■■□□□ 1.84
SHMT1-210ENST00000583780 CERS3Q8IU89 383 aa26.56■■□□□ 1.84
SHMT1-210ENST00000583780 FAM161BQ96MY7 647 aa26.56■■□□□ 1.84
SHMT1-210ENST00000583780 RIOK1Q9BRS2 568 aaKnown RBP26.56■■□□□ 1.84
SHMT1-210ENST00000583780 IVNS1ABPQ9Y6Y0 642 aa26.56■■□□□ 1.84
SHMT1-210ENST00000583780 ZNFX1Q9P2E3 1918 aaKnown RBP26.56■■□□□ 1.84
SHMT1-210ENST00000583780 A0A1W2PRG0 241 aa26.55■■□□□ 1.84
SHMT1-210ENST00000583780 RTP1P59025 263 aa26.55■■□□□ 1.84
SHMT1-210ENST00000583780 EVX2Q03828 476 aa26.55■■□□□ 1.84
SHMT1-210ENST00000583780 GABPAQ06546 454 aa26.55■■□□□ 1.84
SHMT1-210ENST00000583780 GJC2Q5T442 439 aaPredicted RBP26.55■■□□□ 1.84
SHMT1-210ENST00000583780 PHF6Q8IWS0 365 aaKnown RBP eCLIP26.55■■□□□ 1.84
SHMT1-210ENST00000583780 CABP5Q9NP86 173 aa26.55■■□□□ 1.84
SHMT1-210ENST00000583780 SEPT2Q15019 361 aa26.54■■□□□ 1.84
SHMT1-210ENST00000583780 ZKSCAN2Q63HK3 967 aa26.54■■□□□ 1.84
SHMT1-210ENST00000583780 MOV10L1Q9BXT6 1211 aaKnown RBP26.54■■□□□ 1.84
SHMT1-210ENST00000583780 COG2Q14746 738 aa26.53■■□□□ 1.84
SHMT1-210ENST00000583780 OLFML2BQ68BL8 750 aa26.53■■□□□ 1.84
SHMT1-210ENST00000583780 SLC39A5Q6ZMH5 540 aa26.53■■□□□ 1.84
SHMT1-210ENST00000583780 STRNO43815 780 aa26.52■■□□□ 1.84
SHMT1-210ENST00000583780 COBLO75128 1261 aa26.52■■□□□ 1.84
SHMT1-210ENST00000583780 MAP3K12Q12852 859 aa26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms