RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	SEMA6C	Q9H3T2	930 aa		6.7	□□□□□ -1.34
SS18-223	ENST00000583595	GSX1	Q9H4S2	264 aa	Predicted RBP	6.7	□□□□□ -1.34
SS18-223	ENST00000583595	TMEM260	Q9NX78	707 aa		6.7	□□□□□ -1.34
SS18-223	ENST00000583595	LOC102724159	A0A0B4J2E5	919 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	ZNF862	O60290	1169 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	PDGFRB	P09619	1106 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	RASGRF1	Q13972	1273 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	PWP2	Q15269	919 aa	Known RBP	6.69	□□□□□ -1.34
SS18-223	ENST00000583595	C21orf62-AS1	Q17RA5	79 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	LARP1B	Q659C4	914 aa	Known RBP	6.69	□□□□□ -1.34
SS18-223	ENST00000583595	C16orf86	Q6ZW13	317 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	DTX1	Q86Y01	620 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	STK35	Q8TDR2	534 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	GATA6	Q92908	595 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	FERD3L	Q96RJ6	166 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	METTL22	Q9BUU2	404 aa	Predicted RBP	6.69	□□□□□ -1.34
SS18-223	ENST00000583595	CEP44	Q9C0F1	390 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	KRT82	Q9NSB4	513 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	ACTR10	Q9NZ32	417 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	RIPOR2	Q9Y4F9	1068 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	ROBO2	Q9HCK4	1378 aa		6.69	□□□□□ -1.34
SS18-223	ENST00000583595	FAM170B	A6NMN3	283 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	TMPRSS2	O15393	492 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	ADAMTS4	O75173	837 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	S100B	P04271	92 aa	Predicted RBP	6.68	□□□□□ -1.34
SS18-223	ENST00000583595	ARNT	P27540	789 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	ID3	Q02535	119 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	CLC	Q05315	142 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	CPSF6	Q16630	551 aa	Known RBP eCLIP	6.68	□□□□□ -1.34
SS18-223	ENST00000583595	KIF4B	Q2VIQ3	1234 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	GK5	Q6ZS86	529 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	PDZD3	Q86UT5	571 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	FMNL3	Q8IVF7	1028 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	SULF2	Q8IWU5	870 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	IER2	Q9BTL4	223 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	LGR6	Q9HBX8	967 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	BRMS1	Q9HCU9	246 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	CRIM1	Q9NZV1	1036 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	PFDN2	Q9UHV9	154 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	MAPK8IP1	Q9UQF2	711 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	DAGLA	Q9Y4D2	1042 aa		6.68	□□□□□ -1.34
SS18-223	ENST00000583595	FAM221A	A4D161	298 aa		6.67	□□□□□ -1.34
SS18-223	ENST00000583595	DYNC1LI2	O43237	492 aa	Predicted RBP	6.67	□□□□□ -1.34
SS18-223	ENST00000583595	DIAPH1	O60610	1272 aa	Known RBP	6.67	□□□□□ -1.34
SS18-223	ENST00000583595	FOSL1	P15407	271 aa		6.67	□□□□□ -1.34
SS18-223	ENST00000583595	HNRNPU	Q00839	825 aa	Known RBP eCLIP	6.67	□□□□□ -1.34
SS18-223	ENST00000583595	PPP2R5E	Q16537	467 aa		6.67	□□□□□ -1.34
SS18-223	ENST00000583595	RASIP1	Q5U651	963 aa		6.67	□□□□□ -1.34
SS18-223	ENST00000583595	SPATC1	Q76KD6	591 aa		6.67	□□□□□ -1.34
SS18-223	ENST00000583595	GATAD2B	Q8WXI9	593 aa		6.67	□□□□□ -1.34
SS18-223	ENST00000583595	PIDD1	Q9HB75	910 aa		6.67	□□□□□ -1.34
SS18-223	ENST00000583595	GABBR1	Q9UBS5	961 aa		6.67	□□□□□ -1.34
SS18-223	ENST00000583595	KDM2B	Q8NHM5	1336 aa		6.67	□□□□□ -1.34
SS18-223	ENST00000583595	CYP26A1	O43174	497 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	TPD52L2	O43399	206 aa	Known RBP	6.66	□□□□□ -1.34
SS18-223	ENST00000583595	PEX14	O75381	377 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	GJB6	O95452	261 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	WNT11	O96014	354 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	BMP6	P22004	513 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	NME2	P22392	152 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	GP2	P55259	537 aa	Known RBP	6.66	□□□□□ -1.34
SS18-223	ENST00000583595	FXN	Q16595	210 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	MTERF2	Q49AM1	385 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	HSP90AB2P	Q58FF8	381 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	DUSP27	Q5VZP5	1158 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	SEZ6L2	Q6UXD5	910 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	RUFY4	Q6ZNE9	571 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	JAML	Q86YT9	394 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	FANCD2OS	Q96PS1	177 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	ATXN3L	Q9H3M9	355 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	DISC1	Q9NRI5	854 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	C1GALT1	Q9NS00	363 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	PCDHGC5	Q9Y5F6	944 aa		6.66	□□□□□ -1.34
SS18-223	ENST00000583595	OAS3	Q9Y6K5	1087 aa	Known RBP	6.66	□□□□□ -1.34
SS18-223	ENST00000583595	DDAH1	O94760	285 aa		6.65	□□□□□ -1.34
SS18-223	ENST00000583595	ASMTL	O95671	621 aa		6.65	□□□□□ -1.34
SS18-223	ENST00000583595	ZNF165	P49910	485 aa		6.65	□□□□□ -1.34
SS18-223	ENST00000583595	RPS26	P62854	115 aa	Known RBP	6.65	□□□□□ -1.34
SS18-223	ENST00000583595	CYP27A1	Q02318	531 aa		6.65	□□□□□ -1.34
SS18-223	ENST00000583595	C2orf27A	Q580R0	203 aa		6.65	□□□□□ -1.34
SS18-223	ENST00000583595	DALRD3	Q5D0E6	543 aa	Known RBP	6.65	□□□□□ -1.34
SS18-223	ENST00000583595	MAP1S	Q66K74	1059 aa	Predicted RBP	6.65	□□□□□ -1.34
SS18-223	ENST00000583595	ZNF765	Q7L2R6	523 aa		6.65	□□□□□ -1.34
SS18-223	ENST00000583595	FERMT3	Q86UX7	667 aa		6.65	□□□□□ -1.34
SS18-223	ENST00000583595	JDP2	Q8WYK2	163 aa		6.65	□□□□□ -1.34
SS18-223	ENST00000583595	FEZ1	Q99689	392 aa		6.65	□□□□□ -1.34
SS18-223	ENST00000583595	EMILIN2	Q9BXX0	1053 aa		6.65	□□□□□ -1.34
SS18-223	ENST00000583595	LRRC3	Q9BY71	257 aa		6.65	□□□□□ -1.34
SS18-223	ENST00000583595	FAM126A	Q9BYI3	521 aa	Predicted RBP	6.65	□□□□□ -1.34
SS18-223	ENST00000583595	CBX8	Q9HC52	389 aa		6.65	□□□□□ -1.34
SS18-223	ENST00000583595	PLEKHD1	A6NEE1	506 aa		6.64	□□□□□ -1.35
SS18-223	ENST00000583595	RNGTT	O60942	597 aa	Known RBP	6.64	□□□□□ -1.35
SS18-223	ENST00000583595	MPP2	Q14168	576 aa		6.64	□□□□□ -1.35
SS18-223	ENST00000583595	MSMP	Q1L6U9	139 aa		6.64	□□□□□ -1.35
SS18-223	ENST00000583595	CWF19L2	Q2TBE0	894 aa	Known RBP	6.64	□□□□□ -1.35
SS18-223	ENST00000583595	LCE3B	Q5TA77	95 aa		6.64	□□□□□ -1.35
SS18-223	ENST00000583595	LSR	Q86X29	649 aa	Predicted RBP	6.64	□□□□□ -1.35
SS18-223	ENST00000583595	SMYD4	Q8IYR2	804 aa	Predicted RBP	6.64	□□□□□ -1.35
SS18-223	ENST00000583595	ZNF526	Q8TF50	670 aa	Predicted RBP	6.64	□□□□□ -1.35
SS18-223	ENST00000583595	THAP3	Q8WTV1	239 aa	Predicted RBP	6.64	□□□□□ -1.35

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