RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 CNPY2Q9Y2B0 182 aa12.26□□□□□ -0.45
SS18-217ENST00000580958 PRPF40AO75400 957 aaKnown RBP12.25□□□□□ -0.45
SS18-217ENST00000580958 DDAH1O94760 285 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 HLA-DOAP06340 250 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 IFNAR1P17181 557 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 GABPAQ06546 454 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 SSRP1Q08945 709 aaKnown RBP12.25□□□□□ -0.45
SS18-217ENST00000580958 TCP10Q12799 353 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 CIAPIN1Q6FI81 312 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 RCSD1Q6JBY9 416 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 FANCBQ8NB91 859 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 NEDD1Q8NHV4 660 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 ANKS1AQ92625 1134 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 C8orf76Q96K31 380 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 PRMT6Q96LA8 375 aaPredicted RBP12.25□□□□□ -0.45
SS18-217ENST00000580958 IDI2Q9BXS1 227 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 SLC26A6Q9BXS9 759 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 TDRD3Q9H7E2 651 aaKnown RBP12.25□□□□□ -0.45
SS18-217ENST00000580958 TCP11L1Q9NUJ3 509 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 STK36Q9NRP7 1315 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 LTBP3Q9NS15 1303 aa12.25□□□□□ -0.45
SS18-217ENST00000580958 CCDC196A0A1B0GTZ2 297 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 FMNL1O95466 1100 aaPredicted RBP12.24□□□□□ -0.45
SS18-217ENST00000580958 CALM1P0DP23 149 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 CALM2P0DP24 149 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 CALM3P0DP25 149 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 NCLP19338 710 aaKnown RBP12.24□□□□□ -0.45
SS18-217ENST00000580958 DNM1Q05193 864 aaKnown RBP12.24□□□□□ -0.45
SS18-217ENST00000580958 TROAPQ12815 778 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 OTUD7BQ6GQQ9 843 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 FAM173BQ6P4H8 233 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 AGBL3Q8NEM8 1001 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 FAM212AQ96EL1 285 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 AIFM3Q96NN9 605 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 ALG1Q9BT22 464 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 GDPD2Q9HCC8 539 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 SWAP70Q9UH65 585 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 SERPINB13Q9UIV8 391 aa12.24□□□□□ -0.45
SS18-217ENST00000580958 PLIN4Q96Q06 1357 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 PLEKHA8P1O95397 391 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 C7P10643 843 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 AKR1B1P15121 316 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 SHMT1P34896 483 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 PRELPP51888 382 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 TNIP1Q15025 636 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 PPP2R5BQ15173 497 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 DLGAP5Q15398 846 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 SKOR2Q2VWA4 1001 aaPredicted RBP12.23□□□□□ -0.45
SS18-217ENST00000580958 SH3BP5LQ7L8J4 393 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 NBPF11Q86T75 865 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 DGKHQ86XP1 1220 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 CMTR1Q8N1G2 835 aaKnown RBP12.23□□□□□ -0.45
SS18-217ENST00000580958 KAT14Q9H8E8 782 aa12.23□□□□□ -0.45
SS18-217ENST00000580958 RBM28Q9NW13 759 aaKnown RBP12.23□□□□□ -0.45
SS18-217ENST00000580958 COL2A1P02458 1487 aaPredicted RBP12.22□□□□□ -0.45
SS18-217ENST00000580958 CLRN2A0PK11 232 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 DDTLA6NHG4 134 aaPredicted RBP12.22□□□□□ -0.45
SS18-217ENST00000580958 UBE2Q2LH0YL09 131 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 FIBPO43427 364 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 ENTPD3O75355 529 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 SLURP2P0DP57 97 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 NUBP1P53384 320 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 TMTC3Q6ZXV5 915 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 USP48Q86UV5 1035 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 ZSCAN29Q8IWY8 852 aaPredicted RBP12.22□□□□□ -0.45
SS18-217ENST00000580958 TRIM22Q8IYM9 498 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 CCDC82Q8N4S0 544 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 CRACR2BQ8N4Y2 399 aaPredicted RBP12.22□□□□□ -0.45
SS18-217ENST00000580958 OGFOD1Q8N543 542 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 TMEM87AQ8NBN3 555 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 PNMA1Q8ND90 353 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 FBXO18Q8NFZ0 1043 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 CTCFLQ8NI51 663 aaPredicted RBP12.22□□□□□ -0.45
SS18-217ENST00000580958 TMEM47Q9BQJ4 181 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 EHD4Q9H223 541 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 DHX36Q9H2U1 1008 aaKnown RBP12.22□□□□□ -0.45
SS18-217ENST00000580958 ZSCAN16Q9H4T2 348 aaPredicted RBP12.22□□□□□ -0.45
SS18-217ENST00000580958 GJB4Q9NTQ9 266 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 TMOD2Q9NZR1 351 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 ZNF70Q9UC06 446 aaPredicted RBP12.22□□□□□ -0.45
SS18-217ENST00000580958 TAOK2Q9UL54 1235 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 ATAD5Q96QE3 1844 aa12.22□□□□□ -0.45
SS18-217ENST00000580958 CNTNAP5Q8WYK1 1306 aa12.21□□□□□ -0.45
SS18-217ENST00000580958 SHTN1A0MZ66 631 aa12.21□□□□□ -0.45
SS18-217ENST00000580958 GADD45BO75293 160 aaPredicted RBP12.21□□□□□ -0.45
SS18-217ENST00000580958 GUCY1A2P33402 732 aa12.21□□□□□ -0.45
SS18-217ENST00000580958 KRT85P78386 507 aa12.21□□□□□ -0.45
SS18-217ENST00000580958 FUT2Q10981 343 aa12.21□□□□□ -0.45
SS18-217ENST00000580958 GRM4Q14833 912 aa12.21□□□□□ -0.45
SS18-217ENST00000580958 KRT40Q6A162 431 aa12.21□□□□□ -0.45
SS18-217ENST00000580958 MTMR14Q8NCE2 650 aa12.21□□□□□ -0.45
SS18-217ENST00000580958 WASF1Q92558 559 aa12.21□□□□□ -0.45
SS18-217ENST00000580958 CEP95Q96GE4 821 aa12.21□□□□□ -0.45
SS18-217ENST00000580958 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.21□□□□□ -0.45
SS18-217ENST00000580958 FHDC1Q9C0D6 1143 aaPredicted RBP12.21□□□□□ -0.45
SS18-217ENST00000580958 DNAJC18Q9H819 358 aa12.21□□□□□ -0.45
SS18-217ENST00000580958 STX8Q9UNK0 236 aa12.21□□□□□ -0.45
SS18-217ENST00000580958 DDX49Q9Y6V7 483 aaKnown RBP12.21□□□□□ -0.45
SS18-217ENST00000580958 ATRNL1Q5VV63 1379 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 POLR2AP24928 1970 aaKnown RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms