RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 MISP3Q96FF7 219 aa10.43□□□□□ -0.74
SS18-214ENST00000580003 FERD3LQ96RJ6 166 aa10.43□□□□□ -0.74
SS18-214ENST00000580003 FAM155AB1AL88 458 aaPredicted RBP10.42□□□□□ -0.74
SS18-214ENST00000580003 CBX7O95931 251 aa10.42□□□□□ -0.74
SS18-214ENST00000580003 RAG1P15918 1043 aa10.42□□□□□ -0.74
SS18-214ENST00000580003 COL9A2Q14055 689 aaPredicted RBP10.42□□□□□ -0.74
SS18-214ENST00000580003 STK11IPQ8N1F8 1099 aa10.42□□□□□ -0.74
SS18-214ENST00000580003 DNAJB8Q8NHS0 232 aa10.42□□□□□ -0.74
SS18-214ENST00000580003 CCDC39Q9UFE4 941 aa10.42□□□□□ -0.74
SS18-214ENST00000580003 IMPDH2P12268 514 aa10.41□□□□□ -0.74
SS18-214ENST00000580003 GBP1P32455 592 aa10.41□□□□□ -0.74
SS18-214ENST00000580003 RAD51AP2Q09MP3 1159 aa10.41□□□□□ -0.74
SS18-214ENST00000580003 OVOS1Q6IE37 1185 aa10.41□□□□□ -0.74
SS18-214ENST00000580003 C22orf34Q6ZV56 151 aa10.41□□□□□ -0.74
SS18-214ENST00000580003 MFSD4AQ8N468 514 aa10.41□□□□□ -0.74
SS18-214ENST00000580003 BAHD1Q8TBE0 780 aaPredicted RBP10.41□□□□□ -0.74
SS18-214ENST00000580003 KIF2CQ99661 725 aa10.41□□□□□ -0.74
SS18-214ENST00000580003 ACBD3Q9H3P7 528 aa10.41□□□□□ -0.74
SS18-214ENST00000580003 PLAGL2Q9UPG8 496 aa10.41□□□□□ -0.74
SS18-214ENST00000580003 INPP5FQ9Y2H2 1132 aa10.41□□□□□ -0.74
SS18-214ENST00000580003 KIR3DL1P43629 444 aa10.4□□□□□ -0.74
SS18-214ENST00000580003 FBXW10Q5XX13 1052 aa10.4□□□□□ -0.74
SS18-214ENST00000580003 PPP1R13LQ8WUF5 828 aa10.4□□□□□ -0.74
SS18-214ENST00000580003 HRASLS5Q96KN8 279 aa10.4□□□□□ -0.74
SS18-214ENST00000580003 SLC5A6Q9Y289 635 aa10.4□□□□□ -0.74
SS18-214ENST00000580003 SNX11Q9Y5W9 270 aa10.4□□□□□ -0.74
SS18-214ENST00000580003 CNTNAP4Q9C0A0 1308 aa10.39□□□□□ -0.75
SS18-214ENST00000580003 ZNF865P0CJ78 1059 aaPredicted RBP10.39□□□□□ -0.75
SS18-214ENST00000580003 FLCNQ8NFG4 579 aa10.39□□□□□ -0.75
SS18-214ENST00000580003 RASGRP4Q8TDF6 673 aa10.39□□□□□ -0.75
SS18-214ENST00000580003 TMEM40Q8WWA1 233 aa10.39□□□□□ -0.75
SS18-214ENST00000580003 TNKS2Q9H2K2 1166 aa10.39□□□□□ -0.75
SS18-214ENST00000580003 VAV3Q9UKW4 847 aa10.39□□□□□ -0.75
SS18-214ENST00000580003 ZNRF3Q9ULT6 936 aa10.39□□□□□ -0.75
SS18-214ENST00000580003 EFR3BQ9Y2G0 817 aa10.39□□□□□ -0.75
SS18-214ENST00000580003 PRR33A8MZF0 331 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 RGS13O14921 159 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 GJA8P48165 433 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 CLCN7P51798 805 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 PRKCQQ04759 706 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 AOC3Q16853 763 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 NKPD1Q17RQ9 610 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 CDCP2Q5VXM1 449 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 NLRC3Q7RTR2 1065 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 SPACA3Q8IXA5 215 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 ATG4CQ96DT6 458 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 FBXL18Q96ME1 805 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 CNNM2Q9H8M5 875 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 GINM1Q9NU53 330 aa10.38□□□□□ -0.75
SS18-214ENST00000580003 CDKAL1Q5VV42 579 aa10.37□□□□□ -0.75
SS18-214ENST00000580003 BCL7CQ8WUZ0 217 aaPredicted RBP10.37□□□□□ -0.75
SS18-214ENST00000580003 ANTXR1Q9H6X2 564 aa10.37□□□□□ -0.75
SS18-214ENST00000580003 PPT2Q9UMR5 302 aa10.37□□□□□ -0.75
SS18-214ENST00000580003 CAPN6Q9Y6Q1 641 aa10.37□□□□□ -0.75
SS18-214ENST00000580003 MEIS3P2A8K0S8 358 aa10.36□□□□□ -0.75
SS18-214ENST00000580003 ADAMTS4O75173 837 aa10.36□□□□□ -0.75
SS18-214ENST00000580003 BNIP3Q12983 259 aa10.36□□□□□ -0.75
SS18-214ENST00000580003 TP53INP2Q8IXH6 220 aa10.36□□□□□ -0.75
SS18-214ENST00000580003 RNF141Q8WVD5 230 aa10.36□□□□□ -0.75
SS18-214ENST00000580003 NME1P15531 152 aaKnown RBP10.35□□□□□ -0.75
SS18-214ENST00000580003 GP2P55259 537 aaKnown RBP10.35□□□□□ -0.75
SS18-214ENST00000580003 ASB11Q8WXH4 323 aa10.35□□□□□ -0.75
SS18-214ENST00000580003 KREMEN1Q96MU8 473 aa10.35□□□□□ -0.75
SS18-214ENST00000580003 CRBNQ96SW2 442 aa10.35□□□□□ -0.75
SS18-214ENST00000580003 KCNH3Q9ULD8 1083 aa10.35□□□□□ -0.75
SS18-214ENST00000580003 SOX9P48436 509 aa10.34□□□□□ -0.75
SS18-214ENST00000580003 GNL2Q13823 731 aaKnown RBP10.34□□□□□ -0.75
SS18-214ENST00000580003 PIWIL2Q8TC59 973 aaKnown RBP10.34□□□□□ -0.75
SS18-214ENST00000580003 HSPA12BQ96MM6 686 aa10.34□□□□□ -0.75
SS18-214ENST00000580003 ASPNQ9BXN1 380 aa10.34□□□□□ -0.75
SS18-214ENST00000580003 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.34□□□□□ -0.75
SS18-214ENST00000580003 UBOX5O94941 541 aa10.33□□□□□ -0.76
SS18-214ENST00000580003 POLR2BP30876 1174 aaKnown RBP10.33□□□□□ -0.76
SS18-214ENST00000580003 CCNFP41002 786 aa10.33□□□□□ -0.76
SS18-214ENST00000580003 NASPP49321 788 aaPredicted RBP10.33□□□□□ -0.76
SS18-214ENST00000580003 CCDC81Q6ZN84 652 aa10.33□□□□□ -0.76
SS18-214ENST00000580003 VPS37DQ86XT2 251 aa10.33□□□□□ -0.76
SS18-214ENST00000580003 AGBL5Q8NDL9 886 aa10.33□□□□□ -0.76
SS18-214ENST00000580003 SEC16BQ96JE7 1060 aa10.33□□□□□ -0.76
SS18-214ENST00000580003 CAPN10Q9HC96 672 aa10.33□□□□□ -0.76
SS18-214ENST00000580003 TNFRSF10CO14798 259 aa10.32□□□□□ -0.76
SS18-214ENST00000580003 RNF4P78317 190 aa10.32□□□□□ -0.76
SS18-214ENST00000580003 TNK2Q07912 1038 aa10.32□□□□□ -0.76
SS18-214ENST00000580003 ZNF574Q6ZN55 896 aaPredicted RBP10.32□□□□□ -0.76
SS18-214ENST00000580003 CPLX3Q8WVH0 158 aa10.32□□□□□ -0.76
SS18-214ENST00000580003 PITPNM2Q9BZ72 1349 aa10.32□□□□□ -0.76
SS18-214ENST00000580003 H3BS24 57 aa10.31□□□□□ -0.76
SS18-214ENST00000580003 EIF6P56537 245 aaKnown RBP10.31□□□□□ -0.76
SS18-214ENST00000580003 ANGEL2Q5VTE6 544 aaKnown RBP10.31□□□□□ -0.76
SS18-214ENST00000580003 SPRED2Q7Z698 418 aa10.31□□□□□ -0.76
SS18-214ENST00000580003 RBBP8NLQ8NC74 664 aaPredicted RBP10.31□□□□□ -0.76
SS18-214ENST00000580003 Q96M66 194 aa10.31□□□□□ -0.76
SS18-214ENST00000580003 TM9SF2Q99805 663 aa10.31□□□□□ -0.76
SS18-214ENST00000580003 SRRTQ9BXP5 876 aaKnown RBP10.31□□□□□ -0.76
SS18-214ENST00000580003 PAK6Q9NQU5 681 aaPredicted RBP10.31□□□□□ -0.76
SS18-214ENST00000580003 ST14Q9Y5Y6 855 aa10.31□□□□□ -0.76
SS18-214ENST00000580003 LOC100996750A0A140TA64 210 aa10.3□□□□□ -0.76
SS18-214ENST00000580003 CLEC3AO75596 197 aa10.3□□□□□ -0.76
SS18-214ENST00000580003 CD8BP10966 210 aa10.3□□□□□ -0.76
SS18-214ENST00000580003 IKZF1Q13422 519 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms