RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 MAP3K10Q02779 954 aa29.41■■■□□ 2.3
SHMT1-207ENST00000580002 SEPT2Q15019 361 aa29.41■■■□□ 2.3
SHMT1-207ENST00000580002 NUP133Q8WUM0 1156 aa29.41■■■□□ 2.3
SHMT1-207ENST00000580002 TMEM47Q9BQJ4 181 aa29.41■■■□□ 2.3
SHMT1-207ENST00000580002 RRAGCQ9HB90 399 aa29.41■■■□□ 2.3
SHMT1-207ENST00000580002 MTMR4Q9NYA4 1195 aa29.41■■■□□ 2.3
SHMT1-207ENST00000580002 ZBTB43O43298 467 aa29.4■■■□□ 2.3
SHMT1-207ENST00000580002 TBC1D12O60347 775 aa29.4■■■□□ 2.3
SHMT1-207ENST00000580002 DDIT3P35638 169 aa29.4■■■□□ 2.3
SHMT1-207ENST00000580002 DGKHQ86XP1 1220 aa29.4■■■□□ 2.3
SHMT1-207ENST00000580002 TMTC2Q8N394 836 aa29.4■■■□□ 2.3
SHMT1-207ENST00000580002 ANKS1AQ92625 1134 aa29.4■■■□□ 2.3
SHMT1-207ENST00000580002 MTMR7Q9Y216 660 aa29.4■■■□□ 2.3
SHMT1-207ENST00000580002 GH2P01242 217 aa29.39■■■□□ 2.3
SHMT1-207ENST00000580002 MYH8P13535 1937 aa29.39■■■□□ 2.3
SHMT1-207ENST00000580002 PLIN4Q96Q06 1357 aa29.39■■■□□ 2.29
SHMT1-207ENST00000580002 PHF20L1A8MW92 1017 aa29.39■■■□□ 2.29
SHMT1-207ENST00000580002 ABCB5Q2M3G0 1257 aa29.39■■■□□ 2.29
SHMT1-207ENST00000580002 SIAH1Q8IUQ4 282 aa29.39■■■□□ 2.29
SHMT1-207ENST00000580002 ZNF526Q8TF50 670 aaPredicted RBP29.39■■■□□ 2.29
SHMT1-207ENST00000580002 DCPSQ96C86 337 aaKnown RBP29.39■■■□□ 2.29
SHMT1-207ENST00000580002 INTS4Q96HW7 963 aaKnown RBP29.39■■■□□ 2.29
SHMT1-207ENST00000580002 CCDC17Q96LX7 622 aa29.39■■■□□ 2.29
SHMT1-207ENST00000580002 NOVP48745 357 aa29.38■■■□□ 2.29
SHMT1-207ENST00000580002 METAP2P50579 478 aaKnown RBP eCLIP29.38■■■□□ 2.29
SHMT1-207ENST00000580002 TROAPQ12815 778 aa29.38■■■□□ 2.29
SHMT1-207ENST00000580002 CMTR1Q8N1G2 835 aaKnown RBP29.38■■■□□ 2.29
SHMT1-207ENST00000580002 CLIP2Q9UDT6 1046 aa29.38■■■□□ 2.29
SHMT1-207ENST00000580002 GOLGA8AA7E2F4 631 aa29.37■■■□□ 2.29
SHMT1-207ENST00000580002 CCDC84Q86UT8 332 aaPredicted RBP29.37■■■□□ 2.29
SHMT1-207ENST00000580002 USP48Q86UV5 1035 aa29.37■■■□□ 2.29
SHMT1-207ENST00000580002 WDR90Q96KV7 1748 aa29.37■■■□□ 2.29
SHMT1-207ENST00000580002 PITPNM2Q9BZ72 1349 aa29.37■■■□□ 2.29
SHMT1-207ENST00000580002 IQCA1LA6NCM1 817 aa29.36■■■□□ 2.29
SHMT1-207ENST00000580002 DCAF8L1A6NGE4 600 aa29.36■■■□□ 2.29
SHMT1-207ENST00000580002 KAT14Q9H8E8 782 aa29.36■■■□□ 2.29
SHMT1-207ENST00000580002 SSC5DA1L4H1 1573 aa29.36■■■□□ 2.29
SHMT1-207ENST00000580002 NT5C2P49902 561 aa29.36■■■□□ 2.29
SHMT1-207ENST00000580002 ATP2B2Q01814 1243 aa29.36■■■□□ 2.29
SHMT1-207ENST00000580002 PRKG1Q13976 671 aa29.36■■■□□ 2.29
SHMT1-207ENST00000580002 RAB3GAP1Q15042 981 aa29.36■■■□□ 2.29
SHMT1-207ENST00000580002 KRT26Q7Z3Y9 468 aa29.36■■■□□ 2.29
SHMT1-207ENST00000580002 LRRC47Q8N1G4 583 aaKnown RBP29.36■■■□□ 2.29
SHMT1-207ENST00000580002 PNMA1Q8ND90 353 aa29.36■■■□□ 2.29
SHMT1-207ENST00000580002 NSUN7Q8NE18 718 aaKnown RBP29.36■■■□□ 2.29
SHMT1-207ENST00000580002 DDX11Q96FC9 970 aa29.36■■■□□ 2.29
SHMT1-207ENST00000580002 SYNE3Q6ZMZ3 975 aa29.35■■■□□ 2.29
SHMT1-207ENST00000580002 CATIPQ7Z7H3 387 aa29.35■■■□□ 2.29
SHMT1-207ENST00000580002 NMRK2Q9NPI5 230 aa29.35■■■□□ 2.29
SHMT1-207ENST00000580002 GJB2P29033 226 aa29.34■■■□□ 2.29
SHMT1-207ENST00000580002 PKP1Q13835 747 aa29.34■■■□□ 2.29
SHMT1-207ENST00000580002 SULF1Q8IWU6 871 aa29.34■■■□□ 2.29
SHMT1-207ENST00000580002 FANCBQ8NB91 859 aa29.34■■■□□ 2.29
SHMT1-207ENST00000580002 GLIS2Q9BZE0 524 aaPredicted RBP29.34■■■□□ 2.29
SHMT1-207ENST00000580002 SMC3Q9UQE7 1217 aa29.34■■■□□ 2.29
SHMT1-207ENST00000580002 GREB1LQ9C091 1923 aaPredicted RBP29.34■■■□□ 2.29
SHMT1-207ENST00000580002 SCN4AP35499 1836 aa29.34■■■□□ 2.29
SHMT1-207ENST00000580002 EEF2P13639 858 aaKnown RBP29.34■■■□□ 2.29
SHMT1-207ENST00000580002 INPP5BP32019 993 aa29.34■■■□□ 2.29
SHMT1-207ENST00000580002 CAP2P40123 477 aa29.34■■■□□ 2.29
SHMT1-207ENST00000580002 CCDC178Q5BJE1 867 aa29.34■■■□□ 2.29
SHMT1-207ENST00000580002 ZSCAN21Q9Y5A6 473 aaPredicted RBP29.34■■■□□ 2.29
SHMT1-207ENST00000580002 UBE2Q2LH0YL09 131 aa29.33■■■□□ 2.29
SHMT1-207ENST00000580002 FMR1Q06787 632 aaKnown RBP eCLIP29.33■■■□□ 2.29
SHMT1-207ENST00000580002 TMEM179Q6ZVK1 233 aa29.33■■■□□ 2.29
SHMT1-207ENST00000580002 CCDC82Q8N4S0 544 aa29.33■■■□□ 2.29
SHMT1-207ENST00000580002 NTRK3Q16288 839 aa29.32■■■□□ 2.28
SHMT1-207ENST00000580002 RTN1Q16799 776 aa29.32■■■□□ 2.28
SHMT1-207ENST00000580002 ZC3H15Q8WU90 426 aaKnown RBP29.32■■■□□ 2.28
SHMT1-207ENST00000580002 TAOK2Q9UL54 1235 aa29.32■■■□□ 2.28
SHMT1-207ENST00000580002 ZBTB21Q9ULJ3 1066 aa29.32■■■□□ 2.28
SHMT1-207ENST00000580002 CLEC11AQ9Y240 323 aa29.32■■■□□ 2.28
SHMT1-207ENST00000580002 PTPDC1A2A3K4 754 aa29.31■■■□□ 2.28
SHMT1-207ENST00000580002 TTLL1O95922 423 aa29.31■■■□□ 2.28
SHMT1-207ENST00000580002 TOP1P11387 765 aaKnown RBP29.31■■■□□ 2.28
SHMT1-207ENST00000580002 SMARCC2Q8TAQ2 1214 aa29.31■■■□□ 2.28
SHMT1-207ENST00000580002 PHKBQ93100 1093 aa29.31■■■□□ 2.28
SHMT1-207ENST00000580002 CABP5Q9NP86 173 aa29.31■■■□□ 2.28
SHMT1-207ENST00000580002 PPP2R3BQ9Y5P8 575 aa29.31■■■□□ 2.28
SHMT1-207ENST00000580002 A0A1W2PRG0 241 aa29.31■■■□□ 2.28
SHMT1-207ENST00000580002 PLEKHA8P1O95397 391 aa29.31■■■□□ 2.28
SHMT1-207ENST00000580002 FDPSP14324 419 aaKnown RBP29.31■■■□□ 2.28
SHMT1-207ENST00000580002 STAG2Q8N3U4 1231 aa29.31■■■□□ 2.28
SHMT1-207ENST00000580002 DDAH1O94760 285 aa29.3■■■□□ 2.28
SHMT1-207ENST00000580002 ICA1Q05084 483 aa29.3■■■□□ 2.28
SHMT1-207ENST00000580002 MAP1SQ66K74 1059 aaPredicted RBP29.3■■■□□ 2.28
SHMT1-207ENST00000580002 PNMA8AQ86V59 439 aaPredicted RBP29.3■■■□□ 2.28
SHMT1-207ENST00000580002 ACER1Q8TDN7 264 aa29.3■■■□□ 2.28
SHMT1-207ENST00000580002 KANSL2Q9H9L4 492 aa29.3■■■□□ 2.28
SHMT1-207ENST00000580002 GOLGA8HP0CJ92 632 aa29.29■■■□□ 2.28
SHMT1-207ENST00000580002 VEGFAP15692 232 aaPredicted RBP29.29■■■□□ 2.28
SHMT1-207ENST00000580002 ZKSCAN4Q969J2 545 aaPredicted RBP29.29■■■□□ 2.28
SHMT1-207ENST00000580002 NID2Q14112 1375 aa29.29■■■□□ 2.28
SHMT1-207ENST00000580002 USP17L5A8MUK1 530 aa29.29■■■□□ 2.28
SHMT1-207ENST00000580002 ECE1P42892 770 aa29.29■■■□□ 2.28
SHMT1-207ENST00000580002 NBPF11Q86T75 865 aa29.29■■■□□ 2.28
SHMT1-207ENST00000580002 ZNF341Q9BYN7 854 aa29.29■■■□□ 2.28
SHMT1-207ENST00000580002 CWC22Q9HCG8 908 aaKnown RBP29.29■■■□□ 2.28
SHMT1-207ENST00000580002 CPLX1O14810 134 aa29.28■■■□□ 2.28
SHMT1-207ENST00000580002 USP2O75604 605 aaPredicted RBP29.28■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms