RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 PDE6AP16499 860 aa16.59■□□□□ 0.25
CCDC40-216ENST00000576241 CAPN2P17655 700 aa16.59■□□□□ 0.25
CCDC40-216ENST00000576241 HOXA7P31268 230 aaPredicted RBP16.59■□□□□ 0.25
CCDC40-216ENST00000576241 FEZ1Q99689 392 aa16.59■□□□□ 0.25
CCDC40-216ENST00000576241 RIOK1Q9BRS2 568 aaKnown RBP16.59■□□□□ 0.25
CCDC40-216ENST00000576241 CRISPLD2Q9H0B8 497 aa16.59■□□□□ 0.25
CCDC40-216ENST00000576241 MYO5AQ9Y4I1 1855 aaKnown RBP16.59■□□□□ 0.25
CCDC40-216ENST00000576241 POLR3DP05423 398 aaPredicted RBP16.58■□□□□ 0.24
CCDC40-216ENST00000576241 HERVK_113P62684 666 aa16.58■□□□□ 0.24
CCDC40-216ENST00000576241 PDE3AQ14432 1141 aa16.58■□□□□ 0.24
CCDC40-216ENST00000576241 CERKLQ49MI3 558 aaPredicted RBP16.58■□□□□ 0.24
CCDC40-216ENST00000576241 TATDN1Q6P1N9 297 aa16.58■□□□□ 0.24
CCDC40-216ENST00000576241 USP17L2Q6R6M4 530 aa16.58■□□□□ 0.24
CCDC40-216ENST00000576241 FAM161BQ96MY7 647 aa16.58■□□□□ 0.24
CCDC40-216ENST00000576241 PAK6Q9NQU5 681 aaPredicted RBP16.58■□□□□ 0.24
CCDC40-216ENST00000576241 MORF4L1Q9UBU8 362 aa16.58■□□□□ 0.24
CCDC40-216ENST00000576241 RAPGEFL1Q9UHV5 662 aa16.58■□□□□ 0.24
CCDC40-216ENST00000576241 CDK5RAP2Q96SN8 1893 aa16.58■□□□□ 0.24
CCDC40-216ENST00000576241 ZNF532Q9HCE3 1301 aa16.57■□□□□ 0.24
CCDC40-216ENST00000576241 POTEB2H3BUK9 544 aa16.57■□□□□ 0.24
CCDC40-216ENST00000576241 RAB3GAP1Q15042 981 aa16.57■□□□□ 0.24
CCDC40-216ENST00000576241 ABCB5Q2M3G0 1257 aa16.57■□□□□ 0.24
CCDC40-216ENST00000576241 GTF3C2Q8WUA4 911 aaPredicted RBP16.57■□□□□ 0.24
CCDC40-216ENST00000576241 P2RX7Q99572 595 aaKnown RBP16.57■□□□□ 0.24
CCDC40-216ENST00000576241 CABP5Q9NP86 173 aa16.57■□□□□ 0.24
CCDC40-216ENST00000576241 ZYXQ15942 572 aaKnown RBP16.56■□□□□ 0.24
CCDC40-216ENST00000576241 FAM109BQ6ICB4 259 aaPredicted RBP16.56■□□□□ 0.24
CCDC40-216ENST00000576241 CCAR1Q8IX12 1150 aaKnown RBP16.56■□□□□ 0.24
CCDC40-216ENST00000576241 GPRC5AQ8NFJ5 357 aa16.56■□□□□ 0.24
CCDC40-216ENST00000576241 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.56■□□□□ 0.24
CCDC40-216ENST00000576241 EMILIN3Q9NT22 766 aa16.56■□□□□ 0.24
CCDC40-216ENST00000576241 PAG1Q9NWQ8 432 aa16.56■□□□□ 0.24
CCDC40-216ENST00000576241 MCM9Q9NXL9 1143 aa16.56■□□□□ 0.24
CCDC40-216ENST00000576241 TCRBV5S4A2TA0A5A2 114 aa16.55■□□□□ 0.24
CCDC40-216ENST00000576241 ATP5JP18859 108 aa16.55■□□□□ 0.24
CCDC40-216ENST00000576241 PLCD1P51178 756 aa16.55■□□□□ 0.24
CCDC40-216ENST00000576241 USP14P54578 494 aa16.55■□□□□ 0.24
CCDC40-216ENST00000576241 LRRCC1Q9C099 1032 aa16.55■□□□□ 0.24
CCDC40-216ENST00000576241 BOLA2Q9H3K6 86 aa16.55■□□□□ 0.24
CCDC40-216ENST00000576241 PRUNE2Q8WUY3 3088 aa16.55■□□□□ 0.24
CCDC40-216ENST00000576241 HMGCRP04035 888 aa16.54■□□□□ 0.24
CCDC40-216ENST00000576241 MAPK4P31152 587 aa16.54■□□□□ 0.24
CCDC40-216ENST00000576241 SHMT1P34896 483 aa16.54■□□□□ 0.24
CCDC40-216ENST00000576241 C20orf194Q5TEA3 1177 aa16.54■□□□□ 0.24
CCDC40-216ENST00000576241 LCORLQ8N3X6 602 aa16.54■□□□□ 0.24
CCDC40-216ENST00000576241 SOCS4Q8WXH5 440 aa16.54■□□□□ 0.24
CCDC40-216ENST00000576241 EDC3Q96F86 508 aaKnown RBP16.54■□□□□ 0.24
CCDC40-216ENST00000576241 C12orf42Q96LP6 360 aa16.54■□□□□ 0.24
CCDC40-216ENST00000576241 PAGR1Q9BTK6 254 aa16.54■□□□□ 0.24
CCDC40-216ENST00000576241 KIAA1683Q9H0B3 1180 aa16.54■□□□□ 0.24
CCDC40-216ENST00000576241 MYH1P12882 1939 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 USP17L15C9J2P7 530 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 USP17L13C9JLJ4 530 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 USP17L11C9JVI0 530 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 USP17L18D6R9N7 530 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 USP17L22D6RA61 530 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 USP17L17D6RBQ6 530 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 USP17L19D6RCP7 530 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 USP17L20D6RJB6 530 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 ADD2P35612 726 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 ERVK-9P63128 1117 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 ERVK-24P63145 666 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 USP17L24Q0WX57 530 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 SDR42E1Q8WUS8 393 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 HAUS7Q99871 368 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.53■□□□□ 0.24
CCDC40-216ENST00000576241 ARMT1Q9H993 441 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 CWC22Q9HCG8 908 aaKnown RBP16.53■□□□□ 0.24
CCDC40-216ENST00000576241 TXNRD2Q9NNW7 524 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 RBPJLQ9UBG7 517 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 GJD2Q9UKL4 321 aa16.53■□□□□ 0.24
CCDC40-216ENST00000576241 LAMA2P24043 3122 aaKnown RBP16.53■□□□□ 0.24
CCDC40-216ENST00000576241 MPHOSPH10O00566 681 aaKnown RBP16.52■□□□□ 0.24
CCDC40-216ENST00000576241 MBD4O95243 580 aa16.52■□□□□ 0.24
CCDC40-216ENST00000576241 GABPAQ06546 454 aa16.52■□□□□ 0.24
CCDC40-216ENST00000576241 ANKLE1Q8NAG6 615 aa16.52■□□□□ 0.24
CCDC40-216ENST00000576241 DDRGK1Q96HY6 314 aa16.52■□□□□ 0.24
CCDC40-216ENST00000576241 NUDT12Q9BQG2 462 aa16.52■□□□□ 0.24
CCDC40-216ENST00000576241 NBPF3Q9H094 633 aa16.52■□□□□ 0.24
CCDC40-216ENST00000576241 DCP1AQ9NPI6 582 aaPredicted RBP16.52■□□□□ 0.24
CCDC40-216ENST00000576241 DDX60LQ5H9U9 1706 aaKnown RBP16.51■□□□□ 0.23
CCDC40-216ENST00000576241 PEX10O60683 326 aa16.51■□□□□ 0.23
CCDC40-216ENST00000576241 VCAM1P19320 739 aa16.51■□□□□ 0.23
CCDC40-216ENST00000576241 ZSCAN25Q6NSZ9 544 aa16.51■□□□□ 0.23
CCDC40-216ENST00000576241 AMOTL1Q8IY63 956 aa16.51■□□□□ 0.23
CCDC40-216ENST00000576241 MAFAQ8NHW3 353 aaPredicted RBP16.51■□□□□ 0.23
CCDC40-216ENST00000576241 ACER1Q8TDN7 264 aa16.51■□□□□ 0.23
CCDC40-216ENST00000576241 HMX1Q9NP08 348 aaPredicted RBP16.51■□□□□ 0.23
CCDC40-216ENST00000576241 ATP8A2Q9NTI2 1148 aa16.51■□□□□ 0.23
CCDC40-216ENST00000576241 SWAP70Q9UH65 585 aa16.51■□□□□ 0.23
CCDC40-216ENST00000576241 RABGAP1Q9Y3P9 1069 aa16.51■□□□□ 0.23
CCDC40-216ENST00000576241 MUC3AQ02505 3323 aa16.5■□□□□ 0.23
CCDC40-216ENST00000576241 NAV1Q8NEY1 1877 aa16.5■□□□□ 0.23
CCDC40-216ENST00000576241 DOCK3Q8IZD9 2030 aa16.5■□□□□ 0.23
CCDC40-216ENST00000576241 CYP2B6P20813 491 aa16.5■□□□□ 0.23
CCDC40-216ENST00000576241 CCNA1P78396 465 aa16.5■□□□□ 0.23
CCDC40-216ENST00000576241 SEPT2Q15019 361 aa16.5■□□□□ 0.23
CCDC40-216ENST00000576241 TRMT44Q8IYL2 757 aaKnown RBP16.5■□□□□ 0.23
CCDC40-216ENST00000576241 SYMPKQ92797 1274 aaKnown RBP16.5■□□□□ 0.23
CCDC40-216ENST00000576241 GPATCH3Q96I76 525 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms