RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 SSC5DA1L4H1 1573 aa28.18■■■□□ 2.1
ATPAF1-213ENST00000574428 CUL4AQ13619 759 aa28.17■■■□□ 2.1
ATPAF1-213ENST00000574428 CCDC178Q5BJE1 867 aa28.17■■■□□ 2.1
ATPAF1-213ENST00000574428 DGKHQ86XP1 1220 aa28.17■■■□□ 2.1
ATPAF1-213ENST00000574428 SLKQ9H2G2 1235 aaPredicted RBP28.17■■■□□ 2.1
ATPAF1-213ENST00000574428 NMRK2Q9NPI5 230 aa28.17■■■□□ 2.1
ATPAF1-213ENST00000574428 CLEC11AQ9Y240 323 aa28.17■■■□□ 2.1
ATPAF1-213ENST00000574428 PFKFB2O60825 505 aa28.16■■■□□ 2.1
ATPAF1-213ENST00000574428 RXRAP19793 462 aa28.16■■■□□ 2.1
ATPAF1-213ENST00000574428 USP48Q86UV5 1035 aa28.16■■■□□ 2.1
ATPAF1-213ENST00000574428 HPS5Q9UPZ3 1129 aa28.16■■■□□ 2.1
ATPAF1-213ENST00000574428 GH2P01242 217 aa28.16■■■□□ 2.1
ATPAF1-213ENST00000574428 CCT2P78371 535 aaKnown RBP28.16■■■□□ 2.1
ATPAF1-213ENST00000574428 MICU3Q86XE3 530 aa28.16■■■□□ 2.1
ATPAF1-213ENST00000574428 ZNF654Q8IZM8 581 aa28.16■■■□□ 2.1
ATPAF1-213ENST00000574428 GTF3C6Q969F1 213 aa28.16■■■□□ 2.1
ATPAF1-213ENST00000574428 MTMR4Q9NYA4 1195 aa28.16■■■□□ 2.1
ATPAF1-213ENST00000574428 SCRN1Q12765 414 aa28.15■■■□□ 2.1
ATPAF1-213ENST00000574428 DCAF15Q66K64 600 aa28.15■■■□□ 2.1
ATPAF1-213ENST00000574428 ANKS1AQ92625 1134 aa28.15■■■□□ 2.1
ATPAF1-213ENST00000574428 HOOK2Q96ED9 719 aa28.15■■■□□ 2.1
ATPAF1-213ENST00000574428 NCOA5Q9HCD5 579 aaKnown RBP28.15■■■□□ 2.1
ATPAF1-213ENST00000574428 FZD1Q9UP38 647 aa28.15■■■□□ 2.1
ATPAF1-213ENST00000574428 PHF20L1A8MW92 1017 aa28.14■■■□□ 2.1
ATPAF1-213ENST00000574428 ZBTB43O43298 467 aa28.14■■■□□ 2.1
ATPAF1-213ENST00000574428 SEPT2Q15019 361 aa28.14■■■□□ 2.1
ATPAF1-213ENST00000574428 TMEM179Q6ZVK1 233 aa28.14■■■□□ 2.1
ATPAF1-213ENST00000574428 CCDC144CPQ8IYA2 1237 aa28.14■■■□□ 2.1
ATPAF1-213ENST00000574428 TMEM47Q9BQJ4 181 aa28.14■■■□□ 2.1
ATPAF1-213ENST00000574428 GLIS2Q9BZE0 524 aaPredicted RBP28.14■■■□□ 2.1
ATPAF1-213ENST00000574428 KAT14Q9H8E8 782 aa28.14■■■□□ 2.1
ATPAF1-213ENST00000574428 DTNBO60941 627 aa28.14■■■□□ 2.09
ATPAF1-213ENST00000574428 GUCY1A2P33402 732 aa28.14■■■□□ 2.09
ATPAF1-213ENST00000574428 SUPT20HL1Q3ZLR7 823 aa28.14■■■□□ 2.09
ATPAF1-213ENST00000574428 SYNE3Q6ZMZ3 975 aa28.14■■■□□ 2.09
ATPAF1-213ENST00000574428 NOVP48745 357 aa28.13■■■□□ 2.09
ATPAF1-213ENST00000574428 RAB3GAP1Q15042 981 aa28.13■■■□□ 2.09
ATPAF1-213ENST00000574428 CATIPQ7Z7H3 387 aa28.13■■■□□ 2.09
ATPAF1-213ENST00000574428 CABP5Q9NP86 173 aa28.13■■■□□ 2.09
ATPAF1-213ENST00000574428 CAP2P40123 477 aa28.12■■■□□ 2.09
ATPAF1-213ENST00000574428 METAP2P50579 478 aaKnown RBP eCLIP28.12■■■□□ 2.09
ATPAF1-213ENST00000574428 NUP133Q8WUM0 1156 aa28.12■■■□□ 2.09
ATPAF1-213ENST00000574428 ZNF341Q9BYN7 854 aa28.12■■■□□ 2.09
ATPAF1-213ENST00000574428 ZBTB21Q9ULJ3 1066 aa28.12■■■□□ 2.09
ATPAF1-213ENST00000574428 TTLL1O95922 423 aa28.11■■■□□ 2.09
ATPAF1-213ENST00000574428 ATP2B2Q01814 1243 aa28.11■■■□□ 2.09
ATPAF1-213ENST00000574428 MAP1SQ66K74 1059 aaPredicted RBP28.11■■■□□ 2.09
ATPAF1-213ENST00000574428 PNMA1Q8ND90 353 aa28.11■■■□□ 2.09
ATPAF1-213ENST00000574428 CDCA5Q96FF9 252 aa28.11■■■□□ 2.09
ATPAF1-213ENST00000574428 FRMD4AQ9P2Q2 1039 aaPredicted RBP28.11■■■□□ 2.09
ATPAF1-213ENST00000574428 GOLGA8AA7E2F4 631 aa28.11■■■□□ 2.09
ATPAF1-213ENST00000574428 KANSL2Q9H9L4 492 aa28.11■■■□□ 2.09
ATPAF1-213ENST00000574428 CLIP2Q9UDT6 1046 aa28.11■■■□□ 2.09
ATPAF1-213ENST00000574428 TOP1P11387 765 aaKnown RBP28.1■■■□□ 2.09
ATPAF1-213ENST00000574428 ICA1Q05084 483 aa28.1■■■□□ 2.09
ATPAF1-213ENST00000574428 PRKG1Q13976 671 aa28.1■■■□□ 2.09
ATPAF1-213ENST00000574428 CDC37L1Q7L3B6 337 aa28.1■■■□□ 2.09
ATPAF1-213ENST00000574428 LRRC47Q8N1G4 583 aaKnown RBP28.1■■■□□ 2.09
ATPAF1-213ENST00000574428 TROAPQ12815 778 aa28.09■■■□□ 2.09
ATPAF1-213ENST00000574428 INTS4Q96HW7 963 aaKnown RBP28.09■■■□□ 2.09
ATPAF1-213ENST00000574428 ANP32EQ9BTT0 268 aa28.09■■■□□ 2.09
ATPAF1-213ENST00000574428 ATAD5Q96QE3 1844 aa28.09■■■□□ 2.09
ATPAF1-213ENST00000574428 DDAH1O94760 285 aa28.09■■■□□ 2.09
ATPAF1-213ENST00000574428 EEF2P13639 858 aaKnown RBP28.09■■■□□ 2.09
ATPAF1-213ENST00000574428 INPP5BP32019 993 aa28.09■■■□□ 2.09
ATPAF1-213ENST00000574428 CHMP4CQ96CF2 233 aa28.09■■■□□ 2.09
ATPAF1-213ENST00000574428 WRNIP1Q96S55 665 aa28.09■■■□□ 2.09
ATPAF1-213ENST00000574428 MTMR7Q9Y216 660 aa28.09■■■□□ 2.09
ATPAF1-213ENST00000574428 CDC27P30260 824 aa28.08■■■□□ 2.09
ATPAF1-213ENST00000574428 LDHDQ86WU2 507 aa28.08■■■□□ 2.09
ATPAF1-213ENST00000574428 SIAH1Q8IUQ4 282 aa28.08■■■□□ 2.09
ATPAF1-213ENST00000574428 ZNF112Q9UJU3 913 aa28.08■■■□□ 2.09
ATPAF1-213ENST00000574428 NID2Q14112 1375 aa28.07■■■□□ 2.08
ATPAF1-213ENST00000574428 ADD1P35611 737 aaKnown RBP28.07■■■□□ 2.08
ATPAF1-213ENST00000574428 RCAN1P53805 252 aa28.07■■■□□ 2.08
ATPAF1-213ENST00000574428 RTN1Q16799 776 aa28.07■■■□□ 2.08
ATPAF1-213ENST00000574428 PPP4R3BQ5MIZ7 849 aa28.07■■■□□ 2.08
ATPAF1-213ENST00000574428 FANCBQ8NB91 859 aa28.07■■■□□ 2.08
ATPAF1-213ENST00000574428 FAM217BQ9NTX9 383 aaPredicted RBP28.07■■■□□ 2.08
ATPAF1-213ENST00000574428 ZSCAN21Q9Y5A6 473 aaPredicted RBP28.07■■■□□ 2.08
ATPAF1-213ENST00000574428 CTNND1O60716 968 aaKnown RBP28.06■■■□□ 2.08
ATPAF1-213ENST00000574428 NYAP2Q9P242 653 aa28.06■■■□□ 2.08
ATPAF1-213ENST00000574428 MYH4Q9Y623 1939 aa28.06■■■□□ 2.08
ATPAF1-213ENST00000574428 CTDNEP1O95476 244 aa28.06■■■□□ 2.08
ATPAF1-213ENST00000574428 ASNSP08243 561 aa28.06■■■□□ 2.08
ATPAF1-213ENST00000574428 CALM1P0DP23 149 aa28.06■■■□□ 2.08
ATPAF1-213ENST00000574428 CALM2P0DP24 149 aa28.06■■■□□ 2.08
ATPAF1-213ENST00000574428 CALM3P0DP25 149 aa28.06■■■□□ 2.08
ATPAF1-213ENST00000574428 RASGRP2Q7LDG7 609 aa28.06■■■□□ 2.08
ATPAF1-213ENST00000574428 CCDC84Q86UT8 332 aaPredicted RBP28.06■■■□□ 2.08
ATPAF1-213ENST00000574428 ZKSCAN4Q969J2 545 aaPredicted RBP28.06■■■□□ 2.08
ATPAF1-213ENST00000574428 KLRG1Q96E93 195 aa28.06■■■□□ 2.08
ATPAF1-213ENST00000574428 TRAF5O00463 557 aa28.05■■■□□ 2.08
ATPAF1-213ENST00000574428 JAK2O60674 1132 aa28.05■■■□□ 2.08
ATPAF1-213ENST00000574428 PPFIA3O75145 1194 aa28.05■■■□□ 2.08
ATPAF1-213ENST00000574428 DHX16O60231 1041 aaKnown RBP28.04■■■□□ 2.08
ATPAF1-213ENST00000574428 USP2O75604 605 aaPredicted RBP28.04■■■□□ 2.08
ATPAF1-213ENST00000574428 NF2P35240 595 aa28.04■■■□□ 2.08
ATPAF1-213ENST00000574428 NSUN7Q8NE18 718 aaKnown RBP28.04■■■□□ 2.08
ATPAF1-213ENST00000574428 SMC3Q9UQE7 1217 aa28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms