RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 TEX11Q8IYF3 940 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 KRI1Q8N9T8 703 aaKnown RBP11.41□□□□□ -0.58
VPS53-206ENST00000570359 WDR66Q8TBY9 1149 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 RBM17Q96I25 401 aaKnown RBP11.41□□□□□ -0.58
VPS53-206ENST00000570359 ANAPC4Q9UJX5 808 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 DUOX1Q9NRD9 1551 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 APBA3O96018 575 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 AFMP43652 599 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 TROAPQ12815 778 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 PIK3AP1Q6ZUJ8 805 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 ZNF622Q969S3 477 aaKnown RBP eCLIP11.4□□□□□ -0.58
VPS53-206ENST00000570359 ARPP21Q9UBL0 812 aaPredicted RBP11.4□□□□□ -0.58
VPS53-206ENST00000570359 THSD7AQ9UPZ6 1657 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 COBLO75128 1261 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 PRR29P0C7W0 189 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 XBP1P17861 261 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 KRT2P35908 639 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 AMOTL1Q8IY63 956 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 ZNF444Q8N0Y2 327 aaPredicted RBP11.4□□□□□ -0.58
VPS53-206ENST00000570359 DHX58Q96C10 678 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 CSRNP2Q9H175 543 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 ATP8A2Q9NTI2 1148 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 SERTAD1Q9UHV2 236 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 LEMD3Q9Y2U8 911 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 STK36Q9NRP7 1315 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 TIAM2Q8IVF5 1701 aa11.4□□□□□ -0.58
VPS53-206ENST00000570359 BAG3O95817 575 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 MCM7P33993 719 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 PROM2Q8N271 834 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 PNMA1Q8ND90 353 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 EPSTI1Q96J88 318 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 TPM2P07951 284 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 ATP1A3P13637 1013 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 CDC25AP30304 524 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 ATP2B2Q01814 1243 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 TMTC3Q6ZXV5 915 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 HEATR3Q7Z4Q2 680 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 TRMT44Q8IYL2 757 aaKnown RBP11.39□□□□□ -0.59
VPS53-206ENST00000570359 TBC1D16Q8TBP0 767 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 NAT10Q9H0A0 1025 aaKnown RBP11.39□□□□□ -0.59
VPS53-206ENST00000570359 PODXL2Q9NZ53 605 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 IFNKQ9P0W0 207 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.39□□□□□ -0.59
VPS53-206ENST00000570359 SBF2Q86WG5 1849 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 UQCRHLA0A096LP55 91 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 VWA3AA6NCI4 1184 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 POLRMTO00411 1230 aaKnown RBP11.39□□□□□ -0.59
VPS53-206ENST00000570359 PPEF1O14829 653 aaPredicted RBP11.39□□□□□ -0.59
VPS53-206ENST00000570359 UQCRHP07919 91 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 METTL16Q86W50 562 aaKnown RBP11.39□□□□□ -0.59
VPS53-206ENST00000570359 PLA2G4DQ86XP0 818 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 C16orf45Q96MC5 204 aaPredicted RBP11.39□□□□□ -0.59
VPS53-206ENST00000570359 RNF26Q9BY78 433 aaPredicted RBP11.39□□□□□ -0.59
VPS53-206ENST00000570359 IL17RBQ9NRM6 502 aa11.39□□□□□ -0.59
VPS53-206ENST00000570359 C12orf60Q5U649 245 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 RESP18Q5W5W9 173 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 KLHL10Q6JEL2 608 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 CACTINQ8WUQ7 758 aaKnown RBP11.38□□□□□ -0.59
VPS53-206ENST00000570359 ZNF592Q92610 1267 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 PCDHA5Q9Y5H7 936 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 CNTNAP5Q8WYK1 1306 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 TRIM75PA6NK02 468 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 CUTAO60888 179 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 CACNB3P54284 484 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 GOLGA8FQ08AF8 430 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 GOLGA8DPQ0D2H9 430 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 RILPL1Q5EBL4 403 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 CREBRFQ8IUR6 639 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 PLIN2Q99541 437 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 FOXP1Q9H334 677 aaPredicted RBP11.38□□□□□ -0.59
VPS53-206ENST00000570359 TRMT1Q9NXH9 659 aaKnown RBP11.38□□□□□ -0.59
VPS53-206ENST00000570359 FAM13BQ9NYF5 915 aa11.38□□□□□ -0.59
VPS53-206ENST00000570359 COL24A1Q17RW2 1714 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 CCDC88AQ3V6T2 1871 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 PPP6R2O75170 966 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 RCSD1Q6JBY9 416 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 TMC6Q7Z403 805 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 COL23A1Q86Y22 540 aaPredicted RBP11.37□□□□□ -0.59
VPS53-206ENST00000570359 RTFDC1Q9BY42 306 aaPredicted RBP11.37□□□□□ -0.59
VPS53-206ENST00000570359 PDCL3Q9H2J4 239 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 DBNDD1Q9H9R9 158 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 BRMS1Q9HCU9 246 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 KCNQ5Q9NR82 932 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 FBXO2Q9UK22 296 aaPredicted RBP11.37□□□□□ -0.59
VPS53-206ENST00000570359 IRS2Q9Y4H2 1338 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 MMP10P09238 476 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 ATP2B4P23634 1241 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 NLRP12P59046 1061 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 GSTO1P78417 241 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 FUT2Q10981 343 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 KRBA2Q6ZNG9 492 aa11.37□□□□□ -0.59
VPS53-206ENST00000570359 FOXP4Q8IVH2 680 aaPredicted RBP11.37□□□□□ -0.59
VPS53-206ENST00000570359 XPO4Q9C0E2 1151 aaKnown RBP11.37□□□□□ -0.59
VPS53-206ENST00000570359 RBM28Q9NW13 759 aaKnown RBP11.37□□□□□ -0.59
VPS53-206ENST00000570359 FRMPD2Q68DX3 1309 aaPredicted RBP11.37□□□□□ -0.59
VPS53-206ENST00000570359 FAM196BA6NMK8 535 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 PRPF3O43395 683 aaKnown RBP11.36□□□□□ -0.59
VPS53-206ENST00000570359 ORC4O43929 436 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 SCG2P13521 617 aa11.36□□□□□ -0.59
VPS53-206ENST00000570359 USP17L2Q6R6M4 530 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms