RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CYP2D7A0A087X1C5 515 aa13.06□□□□□ -0.32
VPS39-208ENST00000564994 A0A1W2PRG0 241 aa13.06□□□□□ -0.32
VPS39-208ENST00000564994 INHAP05111 366 aa13.06□□□□□ -0.32
VPS39-208ENST00000564994 GJB1P08034 283 aa13.06□□□□□ -0.32
VPS39-208ENST00000564994 UBXN2AP68543 259 aa13.06□□□□□ -0.32
VPS39-208ENST00000564994 Q3C1V9 767 aa13.06□□□□□ -0.32
VPS39-208ENST00000564994 FEZ1Q99689 392 aa13.06□□□□□ -0.32
VPS39-208ENST00000564994 KIAA1683Q9H0B3 1180 aa13.06□□□□□ -0.32
VPS39-208ENST00000564994 RNF208Q9H0X6 261 aa13.06□□□□□ -0.32
VPS39-208ENST00000564994 UNC93B1Q9H1C4 597 aa13.06□□□□□ -0.32
VPS39-208ENST00000564994 CABP5Q9NP86 173 aa13.06□□□□□ -0.32
VPS39-208ENST00000564994 ATP8A2Q9NTI2 1148 aa13.06□□□□□ -0.32
VPS39-208ENST00000564994 PARP14Q460N5 1801 aa13.05□□□□□ -0.32
VPS39-208ENST00000564994 VCAM1P19320 739 aa13.05□□□□□ -0.32
VPS39-208ENST00000564994 GJA8P48165 433 aa13.05□□□□□ -0.32
VPS39-208ENST00000564994 C12orf60Q5U649 245 aa13.05□□□□□ -0.32
VPS39-208ENST00000564994 ZSCAN25Q6NSZ9 544 aa13.05□□□□□ -0.32
VPS39-208ENST00000564994 KBTBD3Q8NAB2 608 aa13.05□□□□□ -0.32
VPS39-208ENST00000564994 GPRC5AQ8NFJ5 357 aa13.05□□□□□ -0.32
VPS39-208ENST00000564994 OTUD7AQ8TE49 926 aaPredicted RBP13.05□□□□□ -0.32
VPS39-208ENST00000564994 CRBNQ96SW2 442 aa13.05□□□□□ -0.32
VPS39-208ENST00000564994 TAOK2Q9UL54 1235 aa13.05□□□□□ -0.32
VPS39-208ENST00000564994 SLC4A4Q9Y6R1 1079 aa13.05□□□□□ -0.32
VPS39-208ENST00000564994 USP17L15C9J2P7 530 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 USP17L13C9JLJ4 530 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 USP17L12C9JPN9 530 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 USP17L11C9JVI0 530 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 USP17L21D6R901 530 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 USP17L18D6R9N7 530 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 USP17L22D6RA61 530 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 USP17L17D6RBQ6 530 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 USP17L19D6RCP7 530 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 USP17L20D6RJB6 530 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 MPHOSPH10O00566 681 aaKnown RBP13.04□□□□□ -0.32
VPS39-208ENST00000564994 CNMDO75829 334 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 AKR1B1P15121 316 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 USP14P54578 494 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 ERVK-9P63128 1117 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 ERVK-24P63145 666 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 USP17L24Q0WX57 530 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 CATSPERGQ6ZRH7 1159 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 UBE2Q1Q7Z7E8 422 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 CLEC10AQ8IUN9 316 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 YTHDC1Q96MU7 727 aaKnown RBP13.04□□□□□ -0.32
VPS39-208ENST00000564994 STRBPQ96SI9 672 aaKnown RBP13.04□□□□□ -0.32
VPS39-208ENST00000564994 PAGR1Q9BTK6 254 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 PORCNQ9H237 461 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 SWAP70Q9UH65 585 aa13.04□□□□□ -0.32
VPS39-208ENST00000564994 GREB1LQ9C091 1923 aaPredicted RBP13.03□□□□□ -0.32
VPS39-208ENST00000564994 CDK8P49336 464 aa13.03□□□□□ -0.32
VPS39-208ENST00000564994 TRIM32Q13049 653 aa13.03□□□□□ -0.32
VPS39-208ENST00000564994 KIAA1755Q5JYT7 1200 aa13.03□□□□□ -0.32
VPS39-208ENST00000564994 CTR9Q6PD62 1173 aa13.03□□□□□ -0.32
VPS39-208ENST00000564994 SIAH1Q8IUQ4 282 aa13.03□□□□□ -0.32
VPS39-208ENST00000564994 NKX2-3Q8TAU0 364 aa13.03□□□□□ -0.32
VPS39-208ENST00000564994 PI4K2BQ8TCG2 481 aa13.03□□□□□ -0.32
VPS39-208ENST00000564994 U2AF1L4Q8WU68 220 aaKnown RBP13.03□□□□□ -0.32
VPS39-208ENST00000564994 OSBP2Q969R2 916 aa13.03□□□□□ -0.32
VPS39-208ENST00000564994 GPATCH3Q96I76 525 aa13.03□□□□□ -0.32
VPS39-208ENST00000564994 A0A0G2JMZ2 1700 aa13.02□□□□□ -0.32
VPS39-208ENST00000564994 SGPL1O95470 568 aa13.02□□□□□ -0.33
VPS39-208ENST00000564994 TMEM179Q6ZVK1 233 aa13.02□□□□□ -0.33
VPS39-208ENST00000564994 C16orf86Q6ZW13 317 aa13.02□□□□□ -0.33
VPS39-208ENST00000564994 GTF3C2Q8WUA4 911 aaPredicted RBP13.02□□□□□ -0.33
VPS39-208ENST00000564994 TRIB2Q92519 343 aa13.02□□□□□ -0.33
VPS39-208ENST00000564994 APPBP2Q92624 585 aa13.02□□□□□ -0.33
VPS39-208ENST00000564994 RPAP3Q9H6T3 665 aaPredicted RBP13.02□□□□□ -0.33
VPS39-208ENST00000564994 PAK6Q9NQU5 681 aaPredicted RBP13.02□□□□□ -0.33
VPS39-208ENST00000564994 SPDYE16A6NNV3 312 aaPredicted RBP13.01□□□□□ -0.33
VPS39-208ENST00000564994 GSG1L2A8MUP6 293 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 RNF113AO15541 343 aaKnown RBP13.01□□□□□ -0.33
VPS39-208ENST00000564994 SLC34A2O95436 690 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 HMGCRP04035 888 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 CYP2B6P20813 491 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 MAPK4P31152 587 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 LBX2Q6XYB7 198 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 GPR142Q7Z601 462 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 USP6NLQ92738 828 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 DEFB118Q96PH6 123 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 BTBD7Q9P203 1132 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 RABGAP1Q9Y3P9 1069 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 TTC41PQ6P2S7 1318 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 SALL3Q9BXA9 1300 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 COL11A1P12107 1806 aaPredicted RBP13.01□□□□□ -0.33
VPS39-208ENST00000564994 ALPK3Q96L96 1907 aa13.01□□□□□ -0.33
VPS39-208ENST00000564994 M0R2C6 588 aa13□□□□□ -0.33
VPS39-208ENST00000564994 ICA1Q05084 483 aa13□□□□□ -0.33
VPS39-208ENST00000564994 SBK1Q52WX2 424 aa13□□□□□ -0.33
VPS39-208ENST00000564994 MORN1Q5T089 497 aa13□□□□□ -0.33
VPS39-208ENST00000564994 PLEKHH3Q7Z736 793 aa13□□□□□ -0.33
VPS39-208ENST00000564994 AMOTL1Q8IY63 956 aa13□□□□□ -0.33
VPS39-208ENST00000564994 SOCS4Q8WXH5 440 aa13□□□□□ -0.33
VPS39-208ENST00000564994 DDRGK1Q96HY6 314 aa13□□□□□ -0.33
VPS39-208ENST00000564994 CCDC17Q96LX7 622 aa13□□□□□ -0.33
VPS39-208ENST00000564994 NUDT12Q9BQG2 462 aa13□□□□□ -0.33
VPS39-208ENST00000564994 GNL3Q9BVP2 549 aaKnown RBP eCLIP13□□□□□ -0.33
VPS39-208ENST00000564994 CRISPLD2Q9H0B8 497 aa13□□□□□ -0.33
VPS39-208ENST00000564994 XRN2Q9H0D6 950 aaKnown RBP eCLIP13□□□□□ -0.33
VPS39-208ENST00000564994 EPB41L4AQ9HCS5 686 aaPredicted RBP13□□□□□ -0.33
VPS39-208ENST00000564994 ARPP21Q9UBL0 812 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms