RNA–Protein interactions for RNA: ENST00000563366.5

UBFD1-202, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 3

Gene UBFD1, Length 709 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-202ENST00000563366 RCAN1P53805 252 aa11.37□□□□□ -0.59
UBFD1-202ENST00000563366 CPLX2Q6PUV4 134 aaKnown RBP11.37□□□□□ -0.59
UBFD1-202ENST00000563366 HHIPL2Q6UWX4 724 aa11.37□□□□□ -0.59
UBFD1-202ENST00000563366 OLFM4Q6UX06 510 aa11.37□□□□□ -0.59
UBFD1-202ENST00000563366 USP17L1Q7RTZ2 530 aa11.37□□□□□ -0.59
UBFD1-202ENST00000563366 IQCA1Q86XH1 822 aa11.37□□□□□ -0.59
UBFD1-202ENST00000563366 TNPO1Q92973 898 aaKnown RBP11.37□□□□□ -0.59
UBFD1-202ENST00000563366 TEKT1Q969V4 418 aa11.37□□□□□ -0.59
UBFD1-202ENST00000563366 UBAC1Q9BSL1 405 aa11.37□□□□□ -0.59
UBFD1-202ENST00000563366 TOMM22Q9NS69 142 aa11.37□□□□□ -0.59
UBFD1-202ENST00000563366 LIMD1Q9UGP4 676 aa11.37□□□□□ -0.59
UBFD1-202ENST00000563366 A0A0G2JLW4 131 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 MOXD2PA6NHM9 499 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 B4E1Z4 1266 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 USP17L12C9JPN9 530 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 USP17L21D6R901 530 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 SH2B2O14492 632 aaPredicted RBP11.36□□□□□ -0.59
UBFD1-202ENST00000563366 SPTLC1O15269 473 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 ORC4O43929 436 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 CDKL5O76039 1030 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 FGRP09769 529 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 GJB2P29033 226 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 USP46P62068 366 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 CTDSPL2Q05D32 466 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 APOBRQ0VD83 1088 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 R3HDM1Q15032 1099 aaKnown RBP11.36□□□□□ -0.59
UBFD1-202ENST00000563366 PPP2R5BQ15173 497 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 CCDC178Q5BJE1 867 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 DALRD3Q5D0E6 543 aaKnown RBP11.36□□□□□ -0.59
UBFD1-202ENST00000563366 RSBN1LQ6PCB5 846 aaPredicted RBP11.36□□□□□ -0.59
UBFD1-202ENST00000563366 CTR9Q6PD62 1173 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 SYNE3Q6ZMZ3 975 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 SGMS1Q86VZ5 419 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 TEX11Q8IYF3 940 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 MCM9Q9NXL9 1143 aa11.36□□□□□ -0.59
UBFD1-202ENST00000563366 TTF2Q9UNY4 1162 aaKnown RBP11.36□□□□□ -0.59
UBFD1-202ENST00000563366 KLF18A0A0U1RQI7 1052 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 CCDC69A6NI79 296 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 GOLGA8BA8MQT2 603 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 IFIT3O14879 490 aaKnown RBP11.35□□□□□ -0.59
UBFD1-202ENST00000563366 STX6O43752 255 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 BRD1O95696 1058 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 KCNA3P22001 575 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 PDIA3P30101 505 aaKnown RBP11.35□□□□□ -0.59
UBFD1-202ENST00000563366 MCM4P33991 863 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 ANTXR2P58335 489 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 STK3Q13188 491 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 AOC3Q16853 763 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 TMEM67Q5HYA8 995 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 RGS22Q8NE09 1264 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 SH3RF3Q8TEJ3 882 aaPredicted RBP11.35□□□□□ -0.59
UBFD1-202ENST00000563366 LRRC2Q9BYS8 371 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 DBNDD1Q9H9R9 158 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 NAP1L2Q9ULW6 460 aaPredicted RBP11.35□□□□□ -0.59
UBFD1-202ENST00000563366 NID2Q14112 1375 aa11.35□□□□□ -0.59
UBFD1-202ENST00000563366 CCDC196A0A1B0GTZ2 297 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 CPLX1O14810 134 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 NDUFV2P19404 249 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 MMP14P50281 582 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 SCRN1Q12765 414 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 WTAPQ15007 396 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 TUSC1Q2TAM9 212 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 RRP12Q5JTH9 1297 aaKnown RBP11.34□□□□□ -0.59
UBFD1-202ENST00000563366 DACT2Q5SW24 774 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 C12orf60Q5U649 245 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 NFXL1Q6ZNB6 911 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 CHST3Q7LGC8 479 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 NECAB1Q8N987 351 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 FAM184AQ8NB25 1140 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 SMARCC2Q8TAQ2 1214 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 LRCH3Q96II8 777 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 ZSWIM5Q9P217 1185 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 MKRN1Q9UHC7 482 aaKnown RBP11.34□□□□□ -0.59
UBFD1-202ENST00000563366 SERPINA10Q9UK55 444 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 DAGLAQ9Y4D2 1042 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 SLC12A7Q9Y666 1083 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 FLT1P17948 1338 aa11.34□□□□□ -0.59
UBFD1-202ENST00000563366 ADAMTSL1Q8N6G6 1762 aa11.33□□□□□ -0.59
UBFD1-202ENST00000563366 MYH15Q9Y2K3 1946 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 GOLGA8CPA6NN73 597 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 ZBTB43O43298 467 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 HRO43593 1189 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 POLR3DP05423 398 aaPredicted RBP11.33□□□□□ -0.6
UBFD1-202ENST00000563366 CALM1P0DP23 149 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 CALM2P0DP24 149 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 CALM3P0DP25 149 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 ZSCAN22P10073 491 aaPredicted RBP11.33□□□□□ -0.6
UBFD1-202ENST00000563366 SYT1P21579 422 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 GJA5P36382 358 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 METAP2P50579 478 aaKnown RBP eCLIP11.33□□□□□ -0.6
UBFD1-202ENST00000563366 COL9A3Q14050 684 aaPredicted RBP11.33□□□□□ -0.6
UBFD1-202ENST00000563366 GRIK5Q16478 980 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 CSPP1Q1MSJ5 1256 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 SKOR2Q2VWA4 1001 aaPredicted RBP11.33□□□□□ -0.6
UBFD1-202ENST00000563366 LARP1BQ659C4 914 aaKnown RBP11.33□□□□□ -0.6
UBFD1-202ENST00000563366 APOA5Q6Q788 366 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 CYB5R4Q7L1T6 521 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 TTC6Q86TZ1 520 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 LARGE2Q8N3Y3 721 aa11.33□□□□□ -0.6
UBFD1-202ENST00000563366 CERS5Q8N5B7 392 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms