RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 USP17L18D6R9N7 530 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 USP17L22D6RA61 530 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 USP17L17D6RBQ6 530 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 USP17L19D6RCP7 530 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 USP17L20D6RJB6 530 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 RNF113AO15541 343 aaKnown RBP20.24■□□□□ 0.83
CLK3-210ENST00000563112 CHGBP05060 677 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 USP17L24Q0WX57 530 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 AAMPQ13685 434 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 SEPT2Q15019 361 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 GPRC5AQ8NFJ5 357 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 PXYLP1Q8TE99 480 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 GLRX3O76003 335 aaKnown RBP20.23■□□□□ 0.83
CLK3-210ENST00000563112 EVX2Q03828 476 aa20.23■□□□□ 0.83
CLK3-210ENST00000563112 MTFR1Q15390 333 aa20.23■□□□□ 0.83
CLK3-210ENST00000563112 C12orf60Q5U649 245 aa20.23■□□□□ 0.83
CLK3-210ENST00000563112 TMEM179Q6ZVK1 233 aa20.23■□□□□ 0.83
CLK3-210ENST00000563112 CCAR1Q8IX12 1150 aaKnown RBP20.23■□□□□ 0.83
CLK3-210ENST00000563112 NKX2-3Q8TAU0 364 aa20.23■□□□□ 0.83
CLK3-210ENST00000563112 ACER1Q8TDN7 264 aa20.23■□□□□ 0.83
CLK3-210ENST00000563112 APPBP2Q92624 585 aa20.23■□□□□ 0.83
CLK3-210ENST00000563112 DYNLL2Q96FJ2 89 aa20.23■□□□□ 0.83
CLK3-210ENST00000563112 BAZ2AQ9UIF9 1905 aaKnown RBP20.23■□□□□ 0.83
CLK3-210ENST00000563112 CENPFP49454 3210 aa20.23■□□□□ 0.83
CLK3-210ENST00000563112 GUCY1A2P33402 732 aa20.22■□□□□ 0.83
CLK3-210ENST00000563112 ANKRD45Q5TZF3 282 aa20.22■□□□□ 0.83
CLK3-210ENST00000563112 SLC44A5Q8NCS7 719 aa20.22■□□□□ 0.83
CLK3-210ENST00000563112 GCC1Q96CN9 775 aa20.22■□□□□ 0.83
CLK3-210ENST00000563112 CCDC17Q96LX7 622 aa20.22■□□□□ 0.83
CLK3-210ENST00000563112 STRBPQ96SI9 672 aaKnown RBP20.22■□□□□ 0.83
CLK3-210ENST00000563112 DOCK3Q8IZD9 2030 aa20.21■□□□□ 0.83
CLK3-210ENST00000563112 CCL5P13501 91 aa20.21■□□□□ 0.83
CLK3-210ENST00000563112 MX1P20591 662 aa20.21■□□□□ 0.83
CLK3-210ENST00000563112 CDK8P49336 464 aa20.21■□□□□ 0.83
CLK3-210ENST00000563112 CATSPERGQ6ZRH7 1159 aa20.21■□□□□ 0.83
CLK3-210ENST00000563112 PAGR1Q9BTK6 254 aa20.21■□□□□ 0.83
CLK3-210ENST00000563112 RNF208Q9H0X6 261 aa20.21■□□□□ 0.83
CLK3-210ENST00000563112 RBPJLQ9UBG7 517 aa20.21■□□□□ 0.83
CLK3-210ENST00000563112 ARPP21Q9UBL0 812 aaPredicted RBP20.21■□□□□ 0.83
CLK3-210ENST00000563112 MYH8P13535 1937 aa20.21■□□□□ 0.83
CLK3-210ENST00000563112 CYP2D7A0A087X1C5 515 aa20.2■□□□□ 0.82
CLK3-210ENST00000563112 ELNP15502 786 aa20.2■□□□□ 0.82
CLK3-210ENST00000563112 VCAM1P19320 739 aa20.2■□□□□ 0.82
CLK3-210ENST00000563112 HDAC1Q13547 482 aaPredicted RBP20.2■□□□□ 0.82
CLK3-210ENST00000563112 PRPF38BQ5VTL8 546 aaKnown RBP20.2■□□□□ 0.82
CLK3-210ENST00000563112 GIMAP6Q6P9H5 292 aa20.2■□□□□ 0.82
CLK3-210ENST00000563112 CTR9Q6PD62 1173 aa20.2■□□□□ 0.82
CLK3-210ENST00000563112 OSBP2Q969R2 916 aa20.2■□□□□ 0.82
CLK3-210ENST00000563112 SH2D4AQ9H788 454 aa20.2■□□□□ 0.82
CLK3-210ENST00000563112 ARHGEF10LQ9HCE6 1279 aa20.2■□□□□ 0.82
CLK3-210ENST00000563112 GJB1P08034 283 aa20.19■□□□□ 0.82
CLK3-210ENST00000563112 GNAT2P19087 354 aa20.19■□□□□ 0.82
CLK3-210ENST00000563112 MAPK4P31152 587 aa20.19■□□□□ 0.82
CLK3-210ENST00000563112 ERVK-9P63128 1117 aa20.19■□□□□ 0.82
CLK3-210ENST00000563112 ERVK-24P63145 666 aa20.19■□□□□ 0.82
CLK3-210ENST00000563112 C16orf86Q6ZW13 317 aa20.19■□□□□ 0.82
CLK3-210ENST00000563112 PI4K2BQ8TCG2 481 aa20.19■□□□□ 0.82
CLK3-210ENST00000563112 OTUD7AQ8TE49 926 aaPredicted RBP20.19■□□□□ 0.82
CLK3-210ENST00000563112 FSD1Q9BTV5 496 aa20.19■□□□□ 0.82
CLK3-210ENST00000563112 CWC22Q9HCG8 908 aaKnown RBP20.19■□□□□ 0.82
CLK3-210ENST00000563112 TXNRD2Q9NNW7 524 aa20.19■□□□□ 0.82
CLK3-210ENST00000563112 RABGAP1Q9Y3P9 1069 aa20.19■□□□□ 0.82
CLK3-210ENST00000563112 GPAA1O43292 621 aa20.18■□□□□ 0.82
CLK3-210ENST00000563112 INHAP05111 366 aa20.18■□□□□ 0.82
CLK3-210ENST00000563112 AKR1B1P15121 316 aa20.18■□□□□ 0.82
CLK3-210ENST00000563112 CCNA1P78396 465 aa20.18■□□□□ 0.82
CLK3-210ENST00000563112 SBK1Q52WX2 424 aa20.18■□□□□ 0.82
CLK3-210ENST00000563112 RPAP3Q9H6T3 665 aaPredicted RBP20.18■□□□□ 0.82
CLK3-210ENST00000563112 A0A1W2PRG0 241 aa20.17■□□□□ 0.82
CLK3-210ENST00000563112 GSG1L2A8MUP6 293 aa20.17■□□□□ 0.82
CLK3-210ENST00000563112 APPP05067 770 aa20.17■□□□□ 0.82
CLK3-210ENST00000563112 ICA1Q05084 483 aa20.17■□□□□ 0.82
CLK3-210ENST00000563112 NUDT12Q9BQG2 462 aa20.17■□□□□ 0.82
CLK3-210ENST00000563112 UNC93B1Q9H1C4 597 aa20.17■□□□□ 0.82
CLK3-210ENST00000563112 GJD2Q9UKL4 321 aa20.17■□□□□ 0.82
CLK3-210ENST00000563112 MINDY4BA8MYZ0 360 aa20.16■□□□□ 0.82
CLK3-210ENST00000563112 PEX10O60683 326 aa20.16■□□□□ 0.82
CLK3-210ENST00000563112 GJA8P48165 433 aa20.16■□□□□ 0.82
CLK3-210ENST00000563112 TDO2P48775 406 aa20.16■□□□□ 0.82
CLK3-210ENST00000563112 Q3C1V9 767 aa20.16■□□□□ 0.82
CLK3-210ENST00000563112 SOCS4Q8WXH5 440 aa20.16■□□□□ 0.82
CLK3-210ENST00000563112 RWDD1Q9H446 243 aaPredicted RBP20.16■□□□□ 0.82
CLK3-210ENST00000563112 KANSL2Q9H9L4 492 aa20.16■□□□□ 0.82
CLK3-210ENST00000563112 HOXC10Q9NYD6 342 aa20.16■□□□□ 0.82
CLK3-210ENST00000563112 PATL2C9JE40 543 aaKnown RBP20.15■□□□□ 0.82
CLK3-210ENST00000563112 SMIM22K7EJ46 135 aa20.15■□□□□ 0.82
CLK3-210ENST00000563112 HMGCRP04035 888 aa20.15■□□□□ 0.82
CLK3-210ENST00000563112 CAPN2P17655 700 aa20.15■□□□□ 0.82
CLK3-210ENST00000563112 COG2Q14746 738 aa20.15■□□□□ 0.82
CLK3-210ENST00000563112 LBX2Q6XYB7 198 aa20.15■□□□□ 0.82
CLK3-210ENST00000563112 PLEKHH3Q7Z736 793 aa20.15■□□□□ 0.82
CLK3-210ENST00000563112 LPAR1Q92633 364 aa20.15■□□□□ 0.82
CLK3-210ENST00000563112 NACAP1Q9BZK3 213 aa20.15■□□□□ 0.82
CLK3-210ENST00000563112 TANGO6Q9C0B7 1094 aa20.15■□□□□ 0.82
CLK3-210ENST00000563112 MKNK2Q9HBH9 465 aa20.15■□□□□ 0.82
CLK3-210ENST00000563112 TMX2Q9Y320 296 aa20.15■□□□□ 0.82
CLK3-210ENST00000563112 M0R2C6 588 aa20.14■□□□□ 0.81
CLK3-210ENST00000563112 CYP2B6P20813 491 aa20.14■□□□□ 0.81
CLK3-210ENST00000563112 ATP2B2Q01814 1243 aa20.14■□□□□ 0.81
CLK3-210ENST00000563112 GPR142Q7Z601 462 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms