RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 RNF208Q9H0X6 261 aa12.41□□□□□ -0.42
CLK3-205ENST00000561673 RBPJLQ9UBG7 517 aa12.41□□□□□ -0.42
CLK3-205ENST00000561673 GJD2Q9UKL4 321 aa12.41□□□□□ -0.42
CLK3-205ENST00000561673 MYH1P12882 1939 aa12.41□□□□□ -0.42
CLK3-205ENST00000561673 PDE4DIPQ5VU43 2346 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 SMIM22K7EJ46 135 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 GJB1P08034 283 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 USP14P54578 494 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 SEPT2Q15019 361 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 Q3C1V9 767 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 SLC44A5Q8NCS7 719 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 SHISA4Q96DD7 197 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 DYNLL2Q96FJ2 89 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 FEZ1Q99689 392 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 KIAA1683Q9H0B3 1180 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 UNC93B1Q9H1C4 597 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 TAOK2Q9UL54 1235 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 SLC4A4Q9Y6R1 1079 aa12.4□□□□□ -0.42
CLK3-205ENST00000561673 RBBP6Q7Z6E9 1792 aaKnown RBP12.4□□□□□ -0.42
CLK3-205ENST00000561673 CYP2D7A0A087X1C5 515 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 USP17L15C9J2P7 530 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 USP17L13C9JLJ4 530 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 USP17L12C9JPN9 530 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 USP17L11C9JVI0 530 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 USP17L21D6R901 530 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 USP17L18D6R9N7 530 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 USP17L22D6RA61 530 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 USP17L17D6RBQ6 530 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 USP17L19D6RCP7 530 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 USP17L20D6RJB6 530 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 MPHOSPH10O00566 681 aaKnown RBP12.39□□□□□ -0.43
CLK3-205ENST00000561673 INHAP05111 366 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 GJA8P48165 433 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 USP17L24Q0WX57 530 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 C12orf60Q5U649 245 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 CATSPERGQ6ZRH7 1159 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 NKX2-3Q8TAU0 364 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 GPATCH3Q96I76 525 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 SWAP70Q9UH65 585 aa12.39□□□□□ -0.43
CLK3-205ENST00000561673 MGAMO43451 1857 aa12.38□□□□□ -0.43
CLK3-205ENST00000561673 DDX60LQ5H9U9 1706 aaKnown RBP12.38□□□□□ -0.43
CLK3-205ENST00000561673 A0A1W2PRG0 241 aa12.38□□□□□ -0.43
CLK3-205ENST00000561673 VCAM1P19320 739 aa12.38□□□□□ -0.43
CLK3-205ENST00000561673 ERVK-9P63128 1117 aa12.38□□□□□ -0.43
CLK3-205ENST00000561673 ERVK-24P63145 666 aa12.38□□□□□ -0.43
CLK3-205ENST00000561673 CTR9Q6PD62 1173 aa12.38□□□□□ -0.43
CLK3-205ENST00000561673 KBTBD3Q8NAB2 608 aa12.38□□□□□ -0.43
CLK3-205ENST00000561673 GTF3C2Q8WUA4 911 aaPredicted RBP12.38□□□□□ -0.43
CLK3-205ENST00000561673 OSBP2Q969R2 916 aa12.38□□□□□ -0.43
CLK3-205ENST00000561673 YTHDC1Q96MU7 727 aaKnown RBP12.38□□□□□ -0.43
CLK3-205ENST00000561673 STRBPQ96SI9 672 aaKnown RBP12.38□□□□□ -0.43
CLK3-205ENST00000561673 CRBNQ96SW2 442 aa12.38□□□□□ -0.43
CLK3-205ENST00000561673 PAGR1Q9BTK6 254 aa12.38□□□□□ -0.43
CLK3-205ENST00000561673 RNF113AO15541 343 aaKnown RBP12.37□□□□□ -0.43
CLK3-205ENST00000561673 CNMDO75829 334 aa12.37□□□□□ -0.43
CLK3-205ENST00000561673 AKR1B1P15121 316 aa12.37□□□□□ -0.43
CLK3-205ENST00000561673 MAPK4P31152 587 aa12.37□□□□□ -0.43
CLK3-205ENST00000561673 CDK8P49336 464 aa12.37□□□□□ -0.43
CLK3-205ENST00000561673 TMEM179Q6ZVK1 233 aa12.37□□□□□ -0.43
CLK3-205ENST00000561673 SIAH1Q8IUQ4 282 aa12.37□□□□□ -0.43
CLK3-205ENST00000561673 OTUD7AQ8TE49 926 aaPredicted RBP12.37□□□□□ -0.43
CLK3-205ENST00000561673 U2AF1L4Q8WU68 220 aaKnown RBP12.37□□□□□ -0.43
CLK3-205ENST00000561673 DDRGK1Q96HY6 314 aa12.37□□□□□ -0.43
CLK3-205ENST00000561673 PORCNQ9H237 461 aa12.37□□□□□ -0.43
CLK3-205ENST00000561673 RPAP3Q9H6T3 665 aaPredicted RBP12.37□□□□□ -0.43
CLK3-205ENST00000561673 RABGAP1Q9Y3P9 1069 aa12.37□□□□□ -0.43
CLK3-205ENST00000561673 SGPL1O95470 568 aa12.36□□□□□ -0.43
CLK3-205ENST00000561673 CYP2B6P20813 491 aa12.36□□□□□ -0.43
CLK3-205ENST00000561673 TRIM32Q13049 653 aa12.36□□□□□ -0.43
CLK3-205ENST00000561673 KIAA1755Q5JYT7 1200 aa12.36□□□□□ -0.43
CLK3-205ENST00000561673 C16orf86Q6ZW13 317 aa12.36□□□□□ -0.43
CLK3-205ENST00000561673 UBE2Q1Q7Z7E8 422 aa12.36□□□□□ -0.43
CLK3-205ENST00000561673 CCAR1Q8IX12 1150 aaKnown RBP12.36□□□□□ -0.43
CLK3-205ENST00000561673 AMOTL1Q8IY63 956 aa12.36□□□□□ -0.43
CLK3-205ENST00000561673 PI4K2BQ8TCG2 481 aa12.36□□□□□ -0.43
CLK3-205ENST00000561673 DEFB118Q96PH6 123 aa12.36□□□□□ -0.43
CLK3-205ENST00000561673 PAK6Q9NQU5 681 aaPredicted RBP12.36□□□□□ -0.43
CLK3-205ENST00000561673 NAV1Q8NEY1 1877 aa12.36□□□□□ -0.43
CLK3-205ENST00000561673 TTC41PQ6P2S7 1318 aa12.36□□□□□ -0.43
CLK3-205ENST00000561673 GSG1L2A8MUP6 293 aa12.35□□□□□ -0.43
CLK3-205ENST00000561673 TFRCP02786 760 aaKnown RBP12.35□□□□□ -0.43
CLK3-205ENST00000561673 HMGCRP04035 888 aa12.35□□□□□ -0.43
CLK3-205ENST00000561673 ZFYP08048 801 aaPredicted RBP12.35□□□□□ -0.43
CLK3-205ENST00000561673 MORN1Q5T089 497 aa12.35□□□□□ -0.43
CLK3-205ENST00000561673 LBX2Q6XYB7 198 aa12.35□□□□□ -0.43
CLK3-205ENST00000561673 GPR142Q7Z601 462 aa12.35□□□□□ -0.43
CLK3-205ENST00000561673 PLEKHH3Q7Z736 793 aa12.35□□□□□ -0.43
CLK3-205ENST00000561673 CLEC10AQ8IUN9 316 aa12.35□□□□□ -0.43
CLK3-205ENST00000561673 APPBP2Q92624 585 aa12.35□□□□□ -0.43
CLK3-205ENST00000561673 USP6NLQ92738 828 aa12.35□□□□□ -0.43
CLK3-205ENST00000561673 CCDC17Q96LX7 622 aa12.35□□□□□ -0.43
CLK3-205ENST00000561673 NUDT12Q9BQG2 462 aa12.35□□□□□ -0.43
CLK3-205ENST00000561673 BTBD7Q9P203 1132 aa12.35□□□□□ -0.43
CLK3-205ENST00000561673 SPDYE16A6NNV3 312 aaPredicted RBP12.34□□□□□ -0.43
CLK3-205ENST00000561673 M0R2C6 588 aa12.34□□□□□ -0.43
CLK3-205ENST00000561673 ERC2O15083 957 aa12.34□□□□□ -0.43
CLK3-205ENST00000561673 GLRX3O76003 335 aaKnown RBP12.34□□□□□ -0.43
CLK3-205ENST00000561673 XRCC5P13010 732 aaKnown RBP12.34□□□□□ -0.43
CLK3-205ENST00000561673 CCNA1P78396 465 aa12.34□□□□□ -0.43
CLK3-205ENST00000561673 ICA1Q05084 483 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms