RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 PTCH1Q13635 1447 aa8.48□□□□□ -1.05
LRRC28-209ENST00000558861 CHD2O14647 1828 aaKnown RBP8.48□□□□□ -1.05
LRRC28-209ENST00000558861 INSM1Q01101 510 aaPredicted RBP8.48□□□□□ -1.05
LRRC28-209ENST00000558861 TRIM28Q13263 835 aaKnown RBP8.48□□□□□ -1.05
LRRC28-209ENST00000558861 PDE3AQ14432 1141 aa8.48□□□□□ -1.05
LRRC28-209ENST00000558861 MIR1-1HGQ9H1L0 117 aa8.48□□□□□ -1.05
LRRC28-209ENST00000558861 SUPT16HQ9Y5B9 1047 aaKnown RBP8.48□□□□□ -1.05
LRRC28-209ENST00000558861 CPS1P31327 1500 aa8.48□□□□□ -1.05
LRRC28-209ENST00000558861 TONSLQ96HA7 1378 aa8.48□□□□□ -1.05
LRRC28-209ENST00000558861 ROBO2Q9HCK4 1378 aa8.48□□□□□ -1.05
LRRC28-209ENST00000558861 SPDYE3A6NKU9 549 aa8.47□□□□□ -1.05
LRRC28-209ENST00000558861 PIK3R2O00459 728 aa8.47□□□□□ -1.05
LRRC28-209ENST00000558861 EIF4EBP3O60516 100 aaPredicted RBP8.47□□□□□ -1.05
LRRC28-209ENST00000558861 F13A1P00488 732 aa8.47□□□□□ -1.05
LRRC28-209ENST00000558861 TMEM132EQ6IEE7 984 aa8.47□□□□□ -1.05
LRRC28-209ENST00000558861 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.47□□□□□ -1.05
LRRC28-209ENST00000558861 GPBAR1Q8TDU6 330 aa8.47□□□□□ -1.05
LRRC28-209ENST00000558861 JARID2Q92833 1246 aaPredicted RBP8.47□□□□□ -1.05
LRRC28-209ENST00000558861 EAF1Q96JC9 268 aaPredicted RBP8.47□□□□□ -1.05
LRRC28-209ENST00000558861 UBP1Q9NZI7 540 aa8.47□□□□□ -1.05
LRRC28-209ENST00000558861 LAMC1P11047 1609 aa8.47□□□□□ -1.05
LRRC28-209ENST00000558861 YTHDC2Q9H6S0 1430 aaKnown RBP8.46□□□□□ -1.05
LRRC28-209ENST00000558861 KIAA1210Q9ULL0 1709 aa8.46□□□□□ -1.05
LRRC28-209ENST00000558861 RALGAPBQ86X10 1494 aa8.46□□□□□ -1.05
LRRC28-209ENST00000558861 GREM1O60565 184 aa8.46□□□□□ -1.06
LRRC28-209ENST00000558861 TRIM37O94972 964 aa8.46□□□□□ -1.06
LRRC28-209ENST00000558861 ELNP15502 786 aa8.46□□□□□ -1.06
LRRC28-209ENST00000558861 CRKP46108 304 aa8.46□□□□□ -1.06
LRRC28-209ENST00000558861 GJA8P48165 433 aa8.46□□□□□ -1.06
LRRC28-209ENST00000558861 DUOXA2Q1HG44 320 aa8.46□□□□□ -1.06
LRRC28-209ENST00000558861 SHISA2Q6UWI4 295 aa8.46□□□□□ -1.06
LRRC28-209ENST00000558861 BEND7Q8N7W2 519 aaPredicted RBP8.46□□□□□ -1.06
LRRC28-209ENST00000558861 FBXO27Q8NI29 283 aa8.46□□□□□ -1.06
LRRC28-209ENST00000558861 GPRASP2Q96D09 838 aa8.46□□□□□ -1.06
LRRC28-209ENST00000558861 WDR89Q96FK6 387 aaPredicted RBP8.46□□□□□ -1.06
LRRC28-209ENST00000558861 ACSBG1Q96GR2 724 aa8.46□□□□□ -1.06
LRRC28-209ENST00000558861 CACNA2D2Q9NY47 1150 aa8.46□□□□□ -1.06
LRRC28-209ENST00000558861 NOP53Q9NZM5 478 aaKnown RBP8.46□□□□□ -1.06
LRRC28-209ENST00000558861 DLC1Q96QB1 1528 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 ZNF862O60290 1169 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 LIG1P18858 919 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 COL8A1P27658 744 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 GRIK4Q16099 956 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 PRRT3Q5FWE3 981 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 FAM196AQ6ZSG2 479 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 ACAD11Q709F0 780 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 KRT82Q9NSB4 513 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 TMEM94Q12767 1356 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 FAM135BQ49AJ0 1406 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 NCOA3Q9Y6Q9 1424 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 IQSEC2Q5JU85 1478 aa8.45□□□□□ -1.06
LRRC28-209ENST00000558861 TRPM1Q7Z4N2 1603 aa8.44□□□□□ -1.06
LRRC28-209ENST00000558861 KNDC1Q76NI1 1749 aa8.44□□□□□ -1.06
LRRC28-209ENST00000558861 FAM221AA4D161 298 aa8.44□□□□□ -1.06
LRRC28-209ENST00000558861 TLR3O15455 904 aaKnown RBP8.44□□□□□ -1.06
LRRC28-209ENST00000558861 SELPP16109 830 aa8.44□□□□□ -1.06
LRRC28-209ENST00000558861 CDK8P49336 464 aa8.44□□□□□ -1.06
LRRC28-209ENST00000558861 KIAA1211Q6ZU35 1233 aa8.44□□□□□ -1.06
LRRC28-209ENST00000558861 CCDC84Q86UT8 332 aaPredicted RBP8.44□□□□□ -1.06
LRRC28-209ENST00000558861 GATAD2BQ8WXI9 593 aa8.44□□□□□ -1.06
LRRC28-209ENST00000558861 XIRP1Q702N8 1843 aaKnown RBP8.44□□□□□ -1.06
LRRC28-209ENST00000558861 PLEKHH1Q9ULM0 1364 aa8.44□□□□□ -1.06
LRRC28-209ENST00000558861 APOBRQ0VD83 1088 aa8.43□□□□□ -1.06
LRRC28-209ENST00000558861 GNL2Q13823 731 aaKnown RBP8.43□□□□□ -1.06
LRRC28-209ENST00000558861 WDR18Q9BV38 432 aa8.43□□□□□ -1.06
LRRC28-209ENST00000558861 NT5C1AQ9BXI3 368 aa8.43□□□□□ -1.06
LRRC28-209ENST00000558861 PCDHA4Q9UN74 947 aa8.43□□□□□ -1.06
LRRC28-209ENST00000558861 CILPO75339 1184 aa8.42□□□□□ -1.06
LRRC28-209ENST00000558861 SPATA31C1P0DKV0 1188 aa8.42□□□□□ -1.06
LRRC28-209ENST00000558861 SCARA3Q6AZY7 606 aa8.42□□□□□ -1.06
LRRC28-209ENST00000558861 IGF2-ASQ6U949 168 aa8.42□□□□□ -1.06
LRRC28-209ENST00000558861 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.42□□□□□ -1.06
LRRC28-209ENST00000558861 SCARF2Q96GP6 870 aaPredicted RBP8.42□□□□□ -1.06
LRRC28-209ENST00000558861 RUSC1Q9BVN2 902 aa8.42□□□□□ -1.06
LRRC28-209ENST00000558861 MRPL18Q9H0U6 180 aaKnown RBP8.42□□□□□ -1.06
LRRC28-209ENST00000558861 ADGRL3Q9HAR2 1447 aa8.42□□□□□ -1.06
LRRC28-209ENST00000558861 AOC2O75106 756 aa8.41□□□□□ -1.06
LRRC28-209ENST00000558861 DNAJA1P31689 397 aaKnown RBP8.41□□□□□ -1.06
LRRC28-209ENST00000558861 KIF4BQ2VIQ3 1234 aa8.41□□□□□ -1.06
LRRC28-209ENST00000558861 SEZ6Q53EL9 994 aa8.41□□□□□ -1.06
LRRC28-209ENST00000558861 WIPI1Q5MNZ9 446 aaPredicted RBP8.41□□□□□ -1.06
LRRC28-209ENST00000558861 HP1BP3Q5SSJ5 553 aaPredicted RBP8.41□□□□□ -1.06
LRRC28-209ENST00000558861 WAPLQ7Z5K2 1190 aa8.41□□□□□ -1.06
LRRC28-209ENST00000558861 AGGF1Q8N302 714 aaeCLIP8.41□□□□□ -1.06
LRRC28-209ENST00000558861 SLC43A3Q8NBI5 491 aa8.41□□□□□ -1.06
LRRC28-209ENST00000558861 RASGRP4Q8TDF6 673 aa8.41□□□□□ -1.06
LRRC28-209ENST00000558861 TMPRSS13Q9BYE2 586 aa8.41□□□□□ -1.06
LRRC28-209ENST00000558861 PCDHGC5Q9Y5F6 944 aa8.41□□□□□ -1.06
LRRC28-209ENST00000558861 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.4□□□□□ -1.06
LRRC28-209ENST00000558861 DCCP43146 1447 aa8.4□□□□□ -1.06
LRRC28-209ENST00000558861 ROCK2O75116 1388 aaKnown RBP8.4□□□□□ -1.06
LRRC28-209ENST00000558861 BPNT1O95861 308 aa8.4□□□□□ -1.06
LRRC28-209ENST00000558861 RPL6Q02878 288 aaKnown RBP8.4□□□□□ -1.06
LRRC28-209ENST00000558861 MPP2Q14168 576 aa8.4□□□□□ -1.06
LRRC28-209ENST00000558861 INPP5AQ14642 412 aa8.4□□□□□ -1.06
LRRC28-209ENST00000558861 AKAP4Q5JQC9 854 aa8.4□□□□□ -1.06
LRRC28-209ENST00000558861 LRFN4Q6PJG9 635 aa8.4□□□□□ -1.06
LRRC28-209ENST00000558861 REC114Q7Z4M0 266 aa8.4□□□□□ -1.06
LRRC28-209ENST00000558861 SREK1Q8WXA9 508 aaKnown RBP8.4□□□□□ -1.06
LRRC28-209ENST00000558861 PLPPR2Q96GM1 343 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms