RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 GJB4Q9NTQ9 266 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 NARFQ9UHQ1 456 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 MINPP1Q9UNW1 487 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 PAXBP1Q9Y5B6 917 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 TNKSO95271 1327 aa8.35□□□□□ -1.07
VPS13C-206ENST00000558338 NUTM2BA6NNL0 878 aaPredicted RBP8.34□□□□□ -1.07
VPS13C-206ENST00000558338 MINDY4BA8MYZ0 360 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 NUTM2EB1AL46 878 aaPredicted RBP8.34□□□□□ -1.07
VPS13C-206ENST00000558338 SNAP23O00161 211 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 TOM1O60784 492 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 FGRP09769 529 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 GYG1P46976 350 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 KCNJ6P48051 423 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 SEC23AQ15436 765 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 IFIT1BQ5T764 474 aaKnown RBP8.34□□□□□ -1.07
VPS13C-206ENST00000558338 SPTY2D1Q68D10 685 aaPredicted RBP8.34□□□□□ -1.07
VPS13C-206ENST00000558338 SHC4Q6S5L8 630 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 FBXO33Q7Z6M2 555 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 NBPF11Q86T75 865 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 CCDC125Q86Z20 511 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 NUTM2AQ8IVF1 878 aaPredicted RBP8.34□□□□□ -1.07
VPS13C-206ENST00000558338 C17orf53Q8N3J3 647 aaPredicted RBP8.34□□□□□ -1.07
VPS13C-206ENST00000558338 CNNM3Q8NE01 707 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 CRNKL1Q9BZJ0 848 aaKnown RBP8.34□□□□□ -1.07
VPS13C-206ENST00000558338 NRBP1Q9UHY1 535 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 BTAF1O14981 1849 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 CCP110O43303 1012 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 ORC4O43929 436 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 RPS6KA4O75676 772 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 MYL5Q02045 173 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 LRMPQ12912 555 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 TPD52L1Q16890 204 aaPredicted RBP8.34□□□□□ -1.07
VPS13C-206ENST00000558338 CCDC144BQ3MJ40 725 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 KRBA2Q6ZNG9 492 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 TRIML1Q8N9V2 468 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 NKX2-3Q8TAU0 364 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 NUP133Q8WUM0 1156 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 CACTINQ8WUQ7 758 aaKnown RBP8.34□□□□□ -1.07
VPS13C-206ENST00000558338 FAM84BQ96KN1 310 aaPredicted RBP8.34□□□□□ -1.07
VPS13C-206ENST00000558338 ZSCAN10Q96SZ4 725 aaPredicted RBP8.34□□□□□ -1.07
VPS13C-206ENST00000558338 SETDB2Q96T68 719 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 ATP8A2Q9NTI2 1148 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 ARPP21Q9UBL0 812 aaPredicted RBP8.34□□□□□ -1.07
VPS13C-206ENST00000558338 KCNH3Q9ULD8 1083 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 TACC3Q9Y6A5 838 aa8.34□□□□□ -1.07
VPS13C-206ENST00000558338 COL4A1P02462 1669 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 THSD7AQ9UPZ6 1657 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 PRPF3O43395 683 aaKnown RBP8.33□□□□□ -1.08
VPS13C-206ENST00000558338 ZPR1O75312 459 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 SMC2O95347 1197 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 TUBB4AP04350 444 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 PTPREP23469 700 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 HIBADHP31937 336 aaKnown RBP8.33□□□□□ -1.08
VPS13C-206ENST00000558338 KRT2P35908 639 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 RPS8P62241 208 aaKnown RBP8.33□□□□□ -1.08
VPS13C-206ENST00000558338 MCM6Q14566 821 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 SYCP1Q15431 976 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 E2F4Q16254 413 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 CT47A1Q5JQC4 288 aaPredicted RBP8.33□□□□□ -1.08
VPS13C-206ENST00000558338 NBPF5PQ86XG9 351 aaPredicted RBP8.33□□□□□ -1.08
VPS13C-206ENST00000558338 SDR42E1Q8WUS8 393 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 ZKSCAN3Q9BRR0 538 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 INCENPQ9NQS7 918 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 LY75O60449 1722 aa8.33□□□□□ -1.08
VPS13C-206ENST00000558338 BTBD18B2RXH4 712 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 KCNQ2O43526 872 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 SKILP12757 684 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 TNNT1P13805 278 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 PDE4BQ07343 736 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 FAM98CQ17RN3 349 aaKnown RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 SBK1Q52WX2 424 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 CCDC178Q5BJE1 867 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 TBC1D9BQ66K14 1250 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 TPTE2Q6XPS3 522 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 ADGRA1Q86SQ6 560 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 CERS3Q8IU89 383 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 ENAHQ8N8S7 591 aaPredicted RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 CCDC112Q8NEF3 446 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 NSUN4Q96CB9 384 aaKnown RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 FAM212AQ96EL1 285 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 PYM1Q9BRP8 204 aaKnown RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 BAZ2AQ9UIF9 1905 aaKnown RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 FBXO2Q9UK22 296 aaPredicted RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 MYH2Q9UKX2 1941 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 IQSEC3Q9UPP2 1182 aaPredicted RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 SRPRBQ9Y5M8 271 aaKnown RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 TRIM75PA6NK02 468 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 BIN1O00499 593 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 SFPQP23246 707 aaKnown RBP eCLIP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 GUCY1A2P33402 732 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 CCZ1BP86790 482 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 CCZ1P86791 482 aaPredicted RBP8.32□□□□□ -1.08
VPS13C-206ENST00000558338 FANCCQ00597 558 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 NCAPHQ15003 741 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 POSTNQ15063 836 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 C3orf67Q6ZVT6 689 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 FILIP1Q7Z7B0 1213 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 AMOTL1Q8IY63 956 aa8.32□□□□□ -1.08
VPS13C-206ENST00000558338 FNBP4Q8N3X1 1017 aaPredicted RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms