RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 PSMC4P43686 418 aa12.23□□□□□ -0.45
USP3-207ENST00000558218 GCLCP48506 637 aaPredicted RBP12.23□□□□□ -0.45
USP3-207ENST00000558218 SOX10P56693 466 aa12.23□□□□□ -0.45
USP3-207ENST00000558218 BACE1P56817 501 aa12.23□□□□□ -0.45
USP3-207ENST00000558218 CAP1Q01518 475 aa12.23□□□□□ -0.45
USP3-207ENST00000558218 AAMPQ13685 434 aa12.23□□□□□ -0.45
USP3-207ENST00000558218 RRP1BQ14684 758 aaKnown RBP12.23□□□□□ -0.45
USP3-207ENST00000558218 UBE3CQ15386 1083 aa12.23□□□□□ -0.45
USP3-207ENST00000558218 PPP1R15BQ5SWA1 713 aa12.23□□□□□ -0.45
USP3-207ENST00000558218 ZSCAN25Q6NSZ9 544 aa12.23□□□□□ -0.45
USP3-207ENST00000558218 PCDHGA4Q9Y5G9 962 aa12.23□□□□□ -0.45
USP3-207ENST00000558218 NDUFB9Q9Y6M9 179 aa12.23□□□□□ -0.45
USP3-207ENST00000558218 PTPRFP10586 1907 aa12.23□□□□□ -0.45
USP3-207ENST00000558218 ZNF532Q9HCE3 1301 aa12.22□□□□□ -0.45
USP3-207ENST00000558218 TCRBV5S4A2TA0A5A2 114 aa12.22□□□□□ -0.45
USP3-207ENST00000558218 USP17L10C9JJH3 530 aa12.22□□□□□ -0.45
USP3-207ENST00000558218 FMNL1O95466 1100 aaPredicted RBP12.22□□□□□ -0.45
USP3-207ENST00000558218 CYP2C8P10632 490 aa12.22□□□□□ -0.45
USP3-207ENST00000558218 PDE4AP27815 886 aa12.22□□□□□ -0.45
USP3-207ENST00000558218 HOXA7P31268 230 aaPredicted RBP12.22□□□□□ -0.45
USP3-207ENST00000558218 FCGRTP55899 365 aa12.22□□□□□ -0.45
USP3-207ENST00000558218 SLC9C1Q4G0N8 1177 aa12.22□□□□□ -0.45
USP3-207ENST00000558218 SMCR8Q8TEV9 937 aaPredicted RBP12.22□□□□□ -0.45
USP3-207ENST00000558218 DNAJC2Q99543 621 aaKnown RBP12.22□□□□□ -0.45
USP3-207ENST00000558218 BOLA2Q9H3K6 86 aa12.22□□□□□ -0.45
USP3-207ENST00000558218 DNAJC18Q9H819 358 aa12.22□□□□□ -0.45
USP3-207ENST00000558218 ECHDC1Q9NTX5 307 aa12.22□□□□□ -0.45
USP3-207ENST00000558218 SRRDQ9UH36 339 aa12.22□□□□□ -0.45
USP3-207ENST00000558218 MYH1P12882 1939 aa12.21□□□□□ -0.45
USP3-207ENST00000558218 CAPN2P17655 700 aa12.21□□□□□ -0.45
USP3-207ENST00000558218 ADD2P35612 726 aa12.21□□□□□ -0.45
USP3-207ENST00000558218 VARS2Q5ST30 1063 aaKnown RBP12.21□□□□□ -0.45
USP3-207ENST00000558218 GPATCH3Q96I76 525 aa12.21□□□□□ -0.45
USP3-207ENST00000558218 ZNF333Q96JL9 665 aa12.21□□□□□ -0.45
USP3-207ENST00000558218 TRIM47Q96LD4 638 aa12.21□□□□□ -0.45
USP3-207ENST00000558218 ARHGAP39Q9C0H5 1083 aa12.21□□□□□ -0.45
USP3-207ENST00000558218 ATP8A2Q9NTI2 1148 aa12.21□□□□□ -0.45
USP3-207ENST00000558218 TMOD4Q9NZQ9 345 aa12.21□□□□□ -0.45
USP3-207ENST00000558218 SAP30BPQ9UHR5 308 aaKnown RBP12.21□□□□□ -0.45
USP3-207ENST00000558218 ZBTB21Q9ULJ3 1066 aa12.21□□□□□ -0.45
USP3-207ENST00000558218 PTCH2Q9Y6C5 1203 aa12.21□□□□□ -0.45
USP3-207ENST00000558218 POLR3DP05423 398 aaPredicted RBP12.2□□□□□ -0.46
USP3-207ENST00000558218 HMGCS2P54868 508 aa12.2□□□□□ -0.46
USP3-207ENST00000558218 RRP1P56182 461 aaKnown RBP12.2□□□□□ -0.46
USP3-207ENST00000558218 FAM110CQ1W6H9 321 aa12.2□□□□□ -0.46
USP3-207ENST00000558218 CERKLQ49MI3 558 aaPredicted RBP12.2□□□□□ -0.46
USP3-207ENST00000558218 USP17L2Q6R6M4 530 aa12.2□□□□□ -0.46
USP3-207ENST00000558218 ZSWIM6Q9HCJ5 1215 aa12.2□□□□□ -0.46
USP3-207ENST00000558218 CABP5Q9NP86 173 aa12.2□□□□□ -0.46
USP3-207ENST00000558218 ATAD5Q96QE3 1844 aa12.2□□□□□ -0.46
USP3-207ENST00000558218 SIPA1L1O43166 1804 aa12.19□□□□□ -0.46
USP3-207ENST00000558218 CTGFP29279 349 aa12.19□□□□□ -0.46
USP3-207ENST00000558218 USP14P54578 494 aa12.19□□□□□ -0.46
USP3-207ENST00000558218 JAG1P78504 1218 aa12.19□□□□□ -0.46
USP3-207ENST00000558218 GABPAQ06546 454 aa12.19□□□□□ -0.46
USP3-207ENST00000558218 IRF5Q13568 498 aa12.19□□□□□ -0.46
USP3-207ENST00000558218 LRRFIP1Q32MZ4 808 aaKnown RBP12.19□□□□□ -0.46
USP3-207ENST00000558218 TREML2Q5T2D2 321 aa12.19□□□□□ -0.46
USP3-207ENST00000558218 CCDC84Q86UT8 332 aaPredicted RBP12.19□□□□□ -0.46
USP3-207ENST00000558218 RAET1EQ8TD07 263 aa12.19□□□□□ -0.46
USP3-207ENST00000558218 GTF3C2Q8WUA4 911 aaPredicted RBP12.19□□□□□ -0.46
USP3-207ENST00000558218 DDRGK1Q96HY6 314 aa12.19□□□□□ -0.46
USP3-207ENST00000558218 DCP1AQ9NPI6 582 aaPredicted RBP12.19□□□□□ -0.46
USP3-207ENST00000558218 MCM9Q9NXL9 1143 aa12.19□□□□□ -0.46
USP3-207ENST00000558218 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.19□□□□□ -0.46
USP3-207ENST00000558218 SWAP70Q9UH65 585 aa12.19□□□□□ -0.46
USP3-207ENST00000558218 PCDHB15Q9Y5E8 787 aa12.19□□□□□ -0.46
USP3-207ENST00000558218 KIAA0100Q14667 2235 aaKnown RBP12.19□□□□□ -0.46
USP3-207ENST00000558218 TTC41PQ6P2S7 1318 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 MYPNQ86TC9 1320 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 GH2P01242 217 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 ZFYP08048 801 aaPredicted RBP12.18□□□□□ -0.46
USP3-207ENST00000558218 GRK4P32298 578 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 PLCD1P51178 756 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 MTMR2Q13614 643 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 ABCB5Q2M3G0 1257 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 AMOTL1Q8IY63 956 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 PXYLP1Q8TE99 480 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 COA7Q96BR5 231 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 C12orf42Q96LP6 360 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 KIAA1683Q9H0B3 1180 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 ASCC2Q9H1I8 757 aaPredicted RBP12.18□□□□□ -0.46
USP3-207ENST00000558218 MORF4L1Q9UBU8 362 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 LOC285556D6RIA3 1793 aa12.18□□□□□ -0.46
USP3-207ENST00000558218 RBBP6Q7Z6E9 1792 aaKnown RBP12.18□□□□□ -0.46
USP3-207ENST00000558218 TNPO2O14787 897 aaKnown RBP12.17□□□□□ -0.46
USP3-207ENST00000558218 ERC2O15083 957 aa12.17□□□□□ -0.46
USP3-207ENST00000558218 SMARCA5O60264 1052 aaPredicted RBP12.17□□□□□ -0.46
USP3-207ENST00000558218 GDF11O95390 407 aa12.17□□□□□ -0.46
USP3-207ENST00000558218 SHMT1P34896 483 aa12.17□□□□□ -0.46
USP3-207ENST00000558218 IRX3P78415 501 aaPredicted RBP12.17□□□□□ -0.46
USP3-207ENST00000558218 GIMAP6Q6P9H5 292 aa12.17□□□□□ -0.46
USP3-207ENST00000558218 LCORLQ8N3X6 602 aa12.17□□□□□ -0.46
USP3-207ENST00000558218 ANKRD13CQ8N6S4 541 aa12.17□□□□□ -0.46
USP3-207ENST00000558218 KBTBD3Q8NAB2 608 aa12.17□□□□□ -0.46
USP3-207ENST00000558218 NKX2-3Q8TAU0 364 aa12.17□□□□□ -0.46
USP3-207ENST00000558218 EDC3Q96F86 508 aaKnown RBP12.17□□□□□ -0.46
USP3-207ENST00000558218 DDX27Q96GQ7 796 aaKnown RBP12.17□□□□□ -0.46
USP3-207ENST00000558218 CCDC17Q96LX7 622 aa12.17□□□□□ -0.46
USP3-207ENST00000558218 MGAMO43451 1857 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms