RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.02■□□□□ 0.32
USP3-205ENST00000557884 NBPF3Q9H094 633 aa17.02■□□□□ 0.32
USP3-205ENST00000557884 CTNNA3Q9UI47 895 aa17.02■□□□□ 0.32
USP3-205ENST00000557884 USP17L10C9JJH3 530 aa17.01■□□□□ 0.31
USP3-205ENST00000557884 RANBP6O60518 1105 aaKnown RBP17.01■□□□□ 0.31
USP3-205ENST00000557884 TBC1D8O95759 1140 aa17.01■□□□□ 0.31
USP3-205ENST00000557884 BACE1P56817 501 aa17.01■□□□□ 0.31
USP3-205ENST00000557884 IMMTQ16891 758 aaKnown RBP17.01■□□□□ 0.31
USP3-205ENST00000557884 OTUD7BQ6GQQ9 843 aa17.01■□□□□ 0.31
USP3-205ENST00000557884 ANO2Q9NQ90 1003 aa17.01■□□□□ 0.31
USP3-205ENST00000557884 CA12O43570 354 aa17■□□□□ 0.31
USP3-205ENST00000557884 TSPY3P0CV98 308 aa17■□□□□ 0.31
USP3-205ENST00000557884 TSPY8P0CW00 308 aa17■□□□□ 0.31
USP3-205ENST00000557884 TFAP4Q01664 338 aa17■□□□□ 0.31
USP3-205ENST00000557884 AKNAD1Q5T1N1 836 aa17■□□□□ 0.31
USP3-205ENST00000557884 TREML2Q5T2D2 321 aa17■□□□□ 0.31
USP3-205ENST00000557884 GPAT2Q6NUI2 795 aa17■□□□□ 0.31
USP3-205ENST00000557884 FASTKD5Q7L8L6 764 aaKnown RBP17■□□□□ 0.31
USP3-205ENST00000557884 LSG1Q9H089 658 aaKnown RBP17■□□□□ 0.31
USP3-205ENST00000557884 R3HDMLQ9H3Y0 253 aa17■□□□□ 0.31
USP3-205ENST00000557884 SAGE1Q9NXZ1 904 aa17■□□□□ 0.31
USP3-205ENST00000557884 TMOD4Q9NZQ9 345 aa17■□□□□ 0.31
USP3-205ENST00000557884 GTF3C3Q9Y5Q9 886 aa17■□□□□ 0.31
USP3-205ENST00000557884 U3KPZ7 1027 aaPredicted RBP17■□□□□ 0.31
USP3-205ENST00000557884 LAMB1P07942 1786 aa17■□□□□ 0.31
USP3-205ENST00000557884 NEDD4P46934 1319 aa16.99■□□□□ 0.31
USP3-205ENST00000557884 A0A1W2PRG0 241 aa16.99■□□□□ 0.31
USP3-205ENST00000557884 PDHXO00330 501 aa16.99■□□□□ 0.31
USP3-205ENST00000557884 ORC4O43929 436 aa16.99■□□□□ 0.31
USP3-205ENST00000557884 ALDH1A1P00352 501 aa16.99■□□□□ 0.31
USP3-205ENST00000557884 HSPA8P11142 646 aaKnown RBP16.99■□□□□ 0.31
USP3-205ENST00000557884 EEF2P13639 858 aaKnown RBP16.99■□□□□ 0.31
USP3-205ENST00000557884 CTCFP49711 727 aaPredicted RBP16.99■□□□□ 0.31
USP3-205ENST00000557884 MFSD6Q6ZSS7 791 aa16.99■□□□□ 0.31
USP3-205ENST00000557884 ANKRD23Q86SG2 305 aa16.99■□□□□ 0.31
USP3-205ENST00000557884 SIAH1Q8IUQ4 282 aa16.99■□□□□ 0.31
USP3-205ENST00000557884 STAG1Q8WVM7 1258 aa16.99■□□□□ 0.31
USP3-205ENST00000557884 KANSL2Q9H9L4 492 aa16.99■□□□□ 0.31
USP3-205ENST00000557884 EMILIN3Q9NT22 766 aa16.99■□□□□ 0.31
USP3-205ENST00000557884 RBM8AQ9Y5S9 174 aaKnown RBP16.99■□□□□ 0.31
USP3-205ENST00000557884 TSPY2A6NKD2 308 aa16.98■□□□□ 0.31
USP3-205ENST00000557884 FGRP09769 529 aa16.98■□□□□ 0.31
USP3-205ENST00000557884 LBX1P52954 281 aa16.98■□□□□ 0.31
USP3-205ENST00000557884 CRHR2Q13324 411 aa16.98■□□□□ 0.31
USP3-205ENST00000557884 TAF1CQ15572 869 aaPredicted RBP16.98■□□□□ 0.31
USP3-205ENST00000557884 SH3D19Q5HYK7 790 aa16.98■□□□□ 0.31
USP3-205ENST00000557884 USP17L2Q6R6M4 530 aa16.98■□□□□ 0.31
USP3-205ENST00000557884 NKX2-3Q8TAU0 364 aa16.98■□□□□ 0.31
USP3-205ENST00000557884 MAP4K1Q92918 833 aa16.98■□□□□ 0.31
USP3-205ENST00000557884 KIAA1683Q9H0B3 1180 aa16.98■□□□□ 0.31
USP3-205ENST00000557884 RNF41Q9H4P4 317 aaPredicted RBP16.98■□□□□ 0.31
USP3-205ENST00000557884 ARHGEF10LQ9HCE6 1279 aa16.98■□□□□ 0.31
USP3-205ENST00000557884 AGTPBP1Q9UPW5 1226 aa16.98■□□□□ 0.31
USP3-205ENST00000557884 IGKV6D-41A0A0C4DH26 115 aa16.97■□□□□ 0.31
USP3-205ENST00000557884 C19orf81C9J6K1 198 aa16.97■□□□□ 0.31
USP3-205ENST00000557884 PROCA1Q8NCQ7 364 aaPredicted RBP16.97■□□□□ 0.31
USP3-205ENST00000557884 NEDD1Q8NHV4 660 aa16.97■□□□□ 0.31
USP3-205ENST00000557884 CEP95Q96GE4 821 aa16.97■□□□□ 0.31
USP3-205ENST00000557884 TAF6LQ9Y6J9 622 aa16.97■□□□□ 0.31
USP3-205ENST00000557884 ATAD5Q96QE3 1844 aa16.97■□□□□ 0.31
USP3-205ENST00000557884 RAD21O60216 631 aa16.96■□□□□ 0.31
USP3-205ENST00000557884 NMT2O60551 498 aa16.96■□□□□ 0.31
USP3-205ENST00000557884 CYP21A2P08686 494 aa16.96■□□□□ 0.31
USP3-205ENST00000557884 CYP2C8P10632 490 aa16.96■□□□□ 0.31
USP3-205ENST00000557884 USP14P54578 494 aa16.96■□□□□ 0.31
USP3-205ENST00000557884 ZFYVE28Q9HCC9 887 aa16.96■□□□□ 0.31
USP3-205ENST00000557884 MTMR4Q9NYA4 1195 aa16.96■□□□□ 0.31
USP3-205ENST00000557884 CLIP2Q9UDT6 1046 aa16.96■□□□□ 0.31
USP3-205ENST00000557884 PLIN4Q96Q06 1357 aa16.96■□□□□ 0.31
USP3-205ENST00000557884 PHIPQ8WWQ0 1821 aa16.96■□□□□ 0.3
USP3-205ENST00000557884 B4E1Z4 1266 aa16.95■□□□□ 0.3
USP3-205ENST00000557884 PCP11498 1178 aaKnown RBP16.95■□□□□ 0.3
USP3-205ENST00000557884 KIAA1755Q5JYT7 1200 aa16.95■□□□□ 0.3
USP3-205ENST00000557884 SPICE1Q8N0Z3 855 aa16.95■□□□□ 0.3
USP3-205ENST00000557884 PARK7Q99497 189 aaKnown RBP16.95■□□□□ 0.3
USP3-205ENST00000557884 SH2D4AQ9H788 454 aa16.95■□□□□ 0.3
USP3-205ENST00000557884 ZCCHC17Q9NP64 241 aaKnown RBP16.95■□□□□ 0.3
USP3-205ENST00000557884 IL17RBQ9NRM6 502 aa16.95■□□□□ 0.3
USP3-205ENST00000557884 TMX2Q9Y320 296 aa16.95■□□□□ 0.3
USP3-205ENST00000557884 KDM4AO75164 1064 aa16.94■□□□□ 0.3
USP3-205ENST00000557884 VCAM1P19320 739 aa16.94■□□□□ 0.3
USP3-205ENST00000557884 LRRC47Q8N1G4 583 aaKnown RBP16.94■□□□□ 0.3
USP3-205ENST00000557884 ESR2Q92731 530 aa16.94■□□□□ 0.3
USP3-205ENST00000557884 C12orf42Q96LP6 360 aa16.94■□□□□ 0.3
USP3-205ENST00000557884 VCPKMTQ9H867 229 aa16.94■□□□□ 0.3
USP3-205ENST00000557884 NYAP2Q9P242 653 aa16.94■□□□□ 0.3
USP3-205ENST00000557884 STX8Q9UNK0 236 aa16.94■□□□□ 0.3
USP3-205ENST00000557884 GPR25O00155 361 aa16.93■□□□□ 0.3
USP3-205ENST00000557884 SLC27A2O14975 620 aa16.93■□□□□ 0.3
USP3-205ENST00000557884 TTLL1O95922 423 aa16.93■□□□□ 0.3
USP3-205ENST00000557884 IRX3P78415 501 aaPredicted RBP16.93■□□□□ 0.3
USP3-205ENST00000557884 PABPC4Q13310 644 aaKnown RBP eCLIP16.93■□□□□ 0.3
USP3-205ENST00000557884 CREB3L3Q68CJ9 461 aa16.93■□□□□ 0.3
USP3-205ENST00000557884 STOX1Q6ZVD7 989 aa16.93■□□□□ 0.3
USP3-205ENST00000557884 CHMP4CQ96CF2 233 aa16.93■□□□□ 0.3
USP3-205ENST00000557884 ZKSCAN3Q9BRR0 538 aa16.93■□□□□ 0.3
USP3-205ENST00000557884 CFHR5Q9BXR6 569 aa16.93■□□□□ 0.3
USP3-205ENST00000557884 ASCC2Q9H1I8 757 aaPredicted RBP16.93■□□□□ 0.3
USP3-205ENST00000557884 RPAP3Q9H6T3 665 aaPredicted RBP16.93■□□□□ 0.3
USP3-205ENST00000557884 CPA4Q9UI42 421 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms