RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 LBHD1Q9BQE6 289 aaPredicted RBP10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 NOL10Q9BSC4 688 aaKnown RBP10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 DDX20Q9UHI6 824 aaKnown RBP10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 HDAC5Q9UQL6 1122 aa10.05□□□□□ -0.8
CCDC88C-214ENST00000557507 PNMA6EA0A0J9YXQ4 647 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 DNM1LO00429 736 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 GH2P01242 217 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 UQCRFS1P1P0C7P4 283 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 PTPREP23469 700 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 CYP2C19P33261 490 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 PPP4CP60510 307 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 C9orf50Q5SZB4 431 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 WDR78Q5VTH9 848 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 MFSD14CQ5VZR4 134 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 FOXP4Q8IVH2 680 aaPredicted RBP10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 TRMT2AQ8IZ69 625 aaKnown RBP10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 LPAR1Q92633 364 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 EDC3Q96F86 508 aaKnown RBP10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 C12orf42Q96LP6 360 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 CDX2Q99626 313 aaPredicted RBP10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 TRIM34Q9BYJ4 488 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 CWC22Q9HCG8 908 aaKnown RBP10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 GINM1Q9NU53 330 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 BTBD7Q9P203 1132 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 RABGAP1Q9Y3P9 1069 aa10.04□□□□□ -0.8
CCDC88C-214ENST00000557507 SLC15A5A6NIM6 579 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 SPDYE16A6NNV3 312 aaPredicted RBP10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 BAG3O95817 575 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 IGHA2P01877 340 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 CYP2E1P05181 493 aaPredicted RBP10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 GNAI3P08754 354 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 HOXC6P09630 235 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 CYBAP13498 195 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 PLCG2P16885 1265 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 VCAM1P19320 739 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 CNGA1P29973 690 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 DYNLL1P63167 89 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 GRB14Q14449 540 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 SHHQ15465 462 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 MAFAQ8NHW3 353 aaPredicted RBP10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 FEZ1Q99689 392 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 DBNDD2Q9BQY9 259 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 TTYH1Q9H313 450 aaPredicted RBP10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 PIH1D3Q9NQM4 214 aaKnown RBP10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 TNNQ9UQP3 1299 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 ATP11BQ9Y2G3 1177 aa10.03□□□□□ -0.8
CCDC88C-214ENST00000557507 USP17L15C9J2P7 530 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 USP17L13C9JLJ4 530 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 USP17L11C9JVI0 530 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 USP17L18D6R9N7 530 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 USP17L22D6RA61 530 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 USP17L17D6RBQ6 530 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 USP17L19D6RCP7 530 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 USP17L20D6RJB6 530 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 MSCO60682 206 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 HLA-DOAP06340 250 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 CCNA1P78396 465 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 USP17L24Q0WX57 530 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 TRIM60Q495X7 471 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 GJC2Q5T442 439 aaPredicted RBP10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 CATSPERGQ6ZRH7 1159 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 ACER1Q8TDN7 264 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 MYLIPQ8WY64 445 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 PRDM5Q9NQX1 630 aaPredicted RBP10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 PRKAG2Q9UGJ0 569 aa10.02□□□□□ -0.81
CCDC88C-214ENST00000557507 MYH4Q9Y623 1939 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 TCF20Q9UGU0 1960 aaKnown RBP10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 GLRX3O76003 335 aaKnown RBP10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 ZAP70P43403 619 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 ATP2B2Q01814 1243 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 SNX17Q15036 470 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 RAB3GAP1Q15042 981 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 TNNI3KQ59H18 835 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 TTC39AQ5SRH9 613 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 ANO1Q5XXA6 986 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 TATDN1Q6P1N9 297 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 LBX2Q6XYB7 198 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 SH3RF1Q7Z6J0 888 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 BADQ92934 168 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 KIAA1683Q9H0B3 1180 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 SEMA6BQ9H3T3 888 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 PDLIM7Q9NR12 457 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 IVNS1ABPQ9Y6Y0 642 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 FPGT-TNNI3KV9GXZ4 949 aa10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 GREB1LQ9C091 1923 aaPredicted RBP10.01□□□□□ -0.81
CCDC88C-214ENST00000557507 CT47B1P0C2W7 299 aaPredicted RBP10□□□□□ -0.81
CCDC88C-214ENST00000557507 GUCY1A2P33402 732 aa10□□□□□ -0.81
CCDC88C-214ENST00000557507 RARSP54136 660 aaKnown RBP10□□□□□ -0.81
CCDC88C-214ENST00000557507 G3BP1Q13283 466 aaKnown RBP eCLIP10□□□□□ -0.81
CCDC88C-214ENST00000557507 SLC39A5Q6ZMH5 540 aa10□□□□□ -0.81
CCDC88C-214ENST00000557507 MIGA1Q8NAN2 632 aa10□□□□□ -0.81
CCDC88C-214ENST00000557507 EHD4Q9H223 541 aa10□□□□□ -0.81
CCDC88C-214ENST00000557507 RPAP3Q9H6T3 665 aaPredicted RBP10□□□□□ -0.81
CCDC88C-214ENST00000557507 TLR7Q9NYK1 1049 aaKnown RBP10□□□□□ -0.81
CCDC88C-214ENST00000557507 BDP1A6H8Y1 2624 aa10□□□□□ -0.81
CCDC88C-214ENST00000557507 TRIM43BA6NCK2 446 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 KBTBD13C9JR72 458 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 GNAI2P04899 355 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 TRIM27P14373 513 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 FOSL2P15408 326 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms