RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TMTC3Q6ZXV5 915 aa14.58□□□□□ -0.07
SHMT2-229ENST00000557348 RTKN2Q8IZC4 609 aa14.58□□□□□ -0.07
SHMT2-229ENST00000557348 PIBF1Q8WXW3 757 aa14.58□□□□□ -0.07
SHMT2-229ENST00000557348 FBXW7Q969H0 707 aa14.58□□□□□ -0.07
SHMT2-229ENST00000557348 LZTS2Q9BRK4 669 aa14.58□□□□□ -0.07
SHMT2-229ENST00000557348 SWAP70Q9UH65 585 aa14.58□□□□□ -0.07
SHMT2-229ENST00000557348 MYH15Q9Y2K3 1946 aa14.58□□□□□ -0.08
SHMT2-229ENST00000557348 MAP3K11Q16584 847 aa14.58□□□□□ -0.08
SHMT2-229ENST00000557348 ADALQ6DHV7 355 aa14.58□□□□□ -0.08
SHMT2-229ENST00000557348 C7orf43Q8WVR3 580 aa14.58□□□□□ -0.08
SHMT2-229ENST00000557348 PLIN4Q96Q06 1357 aa14.58□□□□□ -0.08
SHMT2-229ENST00000557348 NPM3O75607 178 aaKnown RBP14.57□□□□□ -0.08
SHMT2-229ENST00000557348 CAVIN2O95810 425 aa14.57□□□□□ -0.08
SHMT2-229ENST00000557348 CCDC192P0DO97 292 aa14.57□□□□□ -0.08
SHMT2-229ENST00000557348 ME1P48163 572 aa14.57□□□□□ -0.08
SHMT2-229ENST00000557348 DOK7Q18PE1 504 aa14.57□□□□□ -0.08
SHMT2-229ENST00000557348 CCDC93Q567U6 631 aa14.57□□□□□ -0.08
SHMT2-229ENST00000557348 RILPL1Q5EBL4 403 aa14.57□□□□□ -0.08
SHMT2-229ENST00000557348 ANO1Q5XXA6 986 aa14.57□□□□□ -0.08
SHMT2-229ENST00000557348 NOSTRINQ8IVI9 506 aa14.57□□□□□ -0.08
SHMT2-229ENST00000557348 LINC00301Q8NCQ3 95 aa14.57□□□□□ -0.08
SHMT2-229ENST00000557348 TNMDQ9H2S6 317 aa14.57□□□□□ -0.08
SHMT2-229ENST00000557348 CLSTN2Q9H4D0 955 aa14.57□□□□□ -0.08
SHMT2-229ENST00000557348 USP17L3A6NCW0 530 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 USP17L4A6NCW7 530 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 SPTLC2O15270 562 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 ECE2O60344 883 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 PPP6R2O75170 966 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 HLA-DOAP06340 250 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 RASA1P20936 1047 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 CDK8P49336 464 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 R3HDM1Q15032 1099 aaKnown RBP14.56□□□□□ -0.08
SHMT2-229ENST00000557348 FAM47AQ5JRC9 791 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 USP17L1Q7RTZ2 530 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 TTLL6Q8N841 843 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 NEDD1Q8NHV4 660 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 PGBD1Q96JS3 809 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 ZDHHC15Q96MV8 337 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 PSMD1Q99460 953 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 SPTLC3Q9NUV7 552 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 DACT1Q9NYF0 836 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 CEP131Q9UPN4 1083 aa14.56□□□□□ -0.08
SHMT2-229ENST00000557348 MORC2Q9Y6X9 1032 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-229ENST00000557348 SNED1Q8TER0 1413 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 PPFIA3O75145 1194 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 BMP15O95972 392 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 FAM160A1Q05DH4 1040 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 FUT2Q10981 343 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 SLC39A14Q15043 492 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 SYCP1Q15431 976 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 OTUD7BQ6GQQ9 843 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 RCSD1Q6JBY9 416 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 RBM43Q6ZSC3 357 aaKnown RBP14.55□□□□□ -0.08
SHMT2-229ENST00000557348 CERS5Q8N5B7 392 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 PNMA1Q8ND90 353 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 MRPS27Q92552 414 aaKnown RBP14.55□□□□□ -0.08
SHMT2-229ENST00000557348 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.55□□□□□ -0.085e-8■■■□□ 18.8
SHMT2-229ENST00000557348 DHX36Q9H2U1 1008 aaKnown RBP14.55□□□□□ -0.08
SHMT2-229ENST00000557348 SERPINA10Q9UK55 444 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 KINO60870 393 aaKnown RBP14.55□□□□□ -0.08
SHMT2-229ENST00000557348 CHRNA5P30532 468 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 GRM4Q14833 912 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 DIS3L2Q8IYB7 885 aaKnown RBP14.55□□□□□ -0.08
SHMT2-229ENST00000557348 DYNLL2Q96FJ2 89 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 EHD4Q9H223 541 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 SH3GLB2Q9NR46 395 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.55□□□□□ -0.08
SHMT2-229ENST00000557348 USP40Q9NVE5 1235 aa14.55□□□□□ -0.08
SHMT2-229ENST00000557348 SAP30BPQ9UHR5 308 aaKnown RBP14.55□□□□□ -0.08
SHMT2-229ENST00000557348 FOCADQ5VW36 1801 aa14.54□□□□□ -0.08
SHMT2-229ENST00000557348 CNTNAP5Q8WYK1 1306 aa14.54□□□□□ -0.08
SHMT2-229ENST00000557348 KIF28PB7ZC32 967 aa14.54□□□□□ -0.08
SHMT2-229ENST00000557348 LIG1P18858 919 aa14.54□□□□□ -0.08
SHMT2-229ENST00000557348 SMARCA1P28370 1054 aa14.54□□□□□ -0.08
SHMT2-229ENST00000557348 CRKP46108 304 aa14.54□□□□□ -0.08
SHMT2-229ENST00000557348 PLCD1P51178 756 aa14.54□□□□□ -0.08
SHMT2-229ENST00000557348 FAM193AP78312 1265 aa14.54□□□□□ -0.08
SHMT2-229ENST00000557348 CEBPZQ03701 1054 aaKnown RBP14.54□□□□□ -0.08
SHMT2-229ENST00000557348 DACT2Q5SW24 774 aa14.54□□□□□ -0.08
SHMT2-229ENST00000557348 CCAR1Q8IX12 1150 aaKnown RBP14.54□□□□□ -0.08
SHMT2-229ENST00000557348 AIFM3Q96NN9 605 aa14.54□□□□□ -0.08
SHMT2-229ENST00000557348 DBNDD1Q9H9R9 158 aa14.54□□□□□ -0.08
SHMT2-229ENST00000557348 SMIM22K7EJ46 135 aa14.53□□□□□ -0.08
SHMT2-229ENST00000557348 PTMAP06454 111 aaKnown RBP14.53□□□□□ -0.08
SHMT2-229ENST00000557348 TOP1P11387 765 aaKnown RBP14.53□□□□□ -0.08
SHMT2-229ENST00000557348 CALML3P27482 149 aa14.53□□□□□ -0.08
SHMT2-229ENST00000557348 KRT2P35908 639 aa14.53□□□□□ -0.08
SHMT2-229ENST00000557348 RBM10P98175 930 aaKnown RBP14.53□□□□□ -0.08
SHMT2-229ENST00000557348 OLFM4Q6UX06 510 aa14.53□□□□□ -0.08
SHMT2-229ENST00000557348 PDCL2Q8N4E4 241 aa14.53□□□□□ -0.08
SHMT2-229ENST00000557348 CCDC17Q96LX7 622 aa14.53□□□□□ -0.08
SHMT2-229ENST00000557348 FEZ1Q99689 392 aa14.53□□□□□ -0.08
SHMT2-229ENST00000557348 OSBPL5Q9H0X9 879 aaPredicted RBP14.53□□□□□ -0.08
SHMT2-229ENST00000557348 IL17RBQ9NRM6 502 aa14.53□□□□□ -0.08
SHMT2-229ENST00000557348 SERPINB13Q9UIV8 391 aa14.53□□□□□ -0.08
SHMT2-229ENST00000557348 F8W031 263 aaPredicted RBP14.52□□□□□ -0.08
SHMT2-229ENST00000557348 WDHD1O75717 1129 aaPredicted RBP14.52□□□□□ -0.08
SHMT2-229ENST00000557348 SCG2P13521 617 aa14.52□□□□□ -0.08
SHMT2-229ENST00000557348 NOVP48745 357 aa14.52□□□□□ -0.08
SHMT2-229ENST00000557348 TGFB2P61812 414 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms