RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 PARK7Q99497 189 aaKnown RBP12.74□□□□□ -0.37
LINC00239-201ENST00000556973 PNMA3Q9UL41 463 aa12.74□□□□□ -0.37
LINC00239-201ENST00000556973 FOXP2O15409 715 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 FGAP02671 866 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 AKR1B1P15121 316 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 PDE4BQ07343 736 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 PPARAQ07869 468 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 TREML2Q5T2D2 321 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 C17orf99Q6UX52 265 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 ZNF589Q86UQ0 364 aaPredicted RBP12.73□□□□□ -0.37
LINC00239-201ENST00000556973 TNS4Q8IZW8 715 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 STK11IPQ8N1F8 1099 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 ERO1AQ96HE7 468 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 KIAA1683Q9H0B3 1180 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 EMILIN3Q9NT22 766 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 ANAPC4Q9UJX5 808 aa12.73□□□□□ -0.37
LINC00239-201ENST00000556973 CYP2C8P10632 490 aa12.72□□□□□ -0.37
LINC00239-201ENST00000556973 RASA1P20936 1047 aa12.72□□□□□ -0.37
LINC00239-201ENST00000556973 OSBPP22059 807 aa12.72□□□□□ -0.37
LINC00239-201ENST00000556973 HOXA7P31268 230 aaPredicted RBP12.72□□□□□ -0.37
LINC00239-201ENST00000556973 ARHGEF6Q15052 776 aa12.72□□□□□ -0.37
LINC00239-201ENST00000556973 PKN2Q16513 984 aaKnown RBP12.72□□□□□ -0.37
LINC00239-201ENST00000556973 CTU1Q7Z7A3 348 aaKnown RBP12.72□□□□□ -0.37
LINC00239-201ENST00000556973 ACER1Q8TDN7 264 aa12.72□□□□□ -0.37
LINC00239-201ENST00000556973 RUFY2Q8WXA3 655 aa12.72□□□□□ -0.37
LINC00239-201ENST00000556973 FEZ1Q99689 392 aa12.72□□□□□ -0.37
LINC00239-201ENST00000556973 KANSL2Q9H9L4 492 aa12.72□□□□□ -0.37
LINC00239-201ENST00000556973 ARHGEF10LQ9HCE6 1279 aa12.72□□□□□ -0.37
LINC00239-201ENST00000556973 ZMYM6O95789 1325 aa12.71□□□□□ -0.37
LINC00239-201ENST00000556973 CHMLP26374 656 aa12.71□□□□□ -0.37
LINC00239-201ENST00000556973 DGKZQ13574 1117 aa12.71□□□□□ -0.37
LINC00239-201ENST00000556973 SIAH1Q8IUQ4 282 aa12.71□□□□□ -0.37
LINC00239-201ENST00000556973 C12orf42Q96LP6 360 aa12.71□□□□□ -0.37
LINC00239-201ENST00000556973 SH2D4AQ9H788 454 aa12.71□□□□□ -0.37
LINC00239-201ENST00000556973 PPP4R2Q9NY27 417 aa12.71□□□□□ -0.37
LINC00239-201ENST00000556973 CPA4Q9UI42 421 aa12.71□□□□□ -0.37
LINC00239-201ENST00000556973 GREB1LQ9C091 1923 aaPredicted RBP12.7□□□□□ -0.38
LINC00239-201ENST00000556973 ADGRA2Q96PE1 1338 aa12.7□□□□□ -0.38
LINC00239-201ENST00000556973 A0A1W2PRG0 241 aa12.7□□□□□ -0.38
LINC00239-201ENST00000556973 ICA1Q05084 483 aa12.7□□□□□ -0.38
LINC00239-201ENST00000556973 CTDSPL2Q05D32 466 aa12.7□□□□□ -0.38
LINC00239-201ENST00000556973 KIF22Q14807 665 aa12.7□□□□□ -0.38
LINC00239-201ENST00000556973 ZYXQ15942 572 aaKnown RBP12.7□□□□□ -0.38
LINC00239-201ENST00000556973 SMCR8Q8TEV9 937 aaPredicted RBP12.7□□□□□ -0.38
LINC00239-201ENST00000556973 TMX2Q9Y320 296 aa12.7□□□□□ -0.38
LINC00239-201ENST00000556973 RAD50Q92878 1312 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 USP17L15C9J2P7 530 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 USP17L13C9JLJ4 530 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 USP17L11C9JVI0 530 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 USP17L18D6R9N7 530 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 USP17L22D6RA61 530 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 USP17L17D6RBQ6 530 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 USP17L19D6RCP7 530 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 USP17L20D6RJB6 530 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 ZNF213O14771 459 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 PRDM1O75626 825 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 FGRP09769 529 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 EEF2P13639 858 aaKnown RBP12.69□□□□□ -0.38
LINC00239-201ENST00000556973 GCLCP48506 637 aaPredicted RBP12.69□□□□□ -0.38
LINC00239-201ENST00000556973 IRX3P78415 501 aaPredicted RBP12.69□□□□□ -0.38
LINC00239-201ENST00000556973 LACTBP83111 547 aaPredicted RBP12.69□□□□□ -0.38
LINC00239-201ENST00000556973 TFAP4Q01664 338 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 USP17L24Q0WX57 530 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 CD99L2Q8TCZ2 262 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 DSCC1Q9BVC3 393 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.69□□□□□ -0.38
LINC00239-201ENST00000556973 MCOLN1Q9GZU1 580 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 ASCC2Q9H1I8 757 aaPredicted RBP12.69□□□□□ -0.38
LINC00239-201ENST00000556973 NYAP2Q9P242 653 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 CTNNA3Q9UI47 895 aa12.69□□□□□ -0.38
LINC00239-201ENST00000556973 MGAMO43451 1857 aa12.68□□□□□ -0.38
LINC00239-201ENST00000556973 GNRH1P01148 92 aa12.68□□□□□ -0.38
LINC00239-201ENST00000556973 TSPY3P0CV98 308 aa12.68□□□□□ -0.38
LINC00239-201ENST00000556973 TSPY8P0CW00 308 aa12.68□□□□□ -0.38
LINC00239-201ENST00000556973 BCRP11274 1271 aa12.68□□□□□ -0.38
LINC00239-201ENST00000556973 PCP11498 1178 aaKnown RBP12.68□□□□□ -0.38
LINC00239-201ENST00000556973 BMP2KLQ5H9B9 411 aa12.68□□□□□ -0.38
LINC00239-201ENST00000556973 CATSPERGQ6ZRH7 1159 aa12.68□□□□□ -0.38
LINC00239-201ENST00000556973 NEDD1Q8NHV4 660 aa12.68□□□□□ -0.38
LINC00239-201ENST00000556973 LPAR1Q92633 364 aa12.68□□□□□ -0.38
LINC00239-201ENST00000556973 P2RX7Q99572 595 aaKnown RBP12.68□□□□□ -0.38
LINC00239-201ENST00000556973 EFCC1Q9HA90 598 aa12.68□□□□□ -0.38
LINC00239-201ENST00000556973 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.68□□□□□ -0.38
LINC00239-201ENST00000556973 TRIM17Q9Y577 477 aa12.68□□□□□ -0.38
LINC00239-201ENST00000556973 MYH4Q9Y623 1939 aa12.68□□□□□ -0.38
LINC00239-201ENST00000556973 IGKV6D-41A0A0C4DH26 115 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 TSPY2A6NKD2 308 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 ORC4O43929 436 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 VCAM1P19320 739 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 ATP2B2Q01814 1243 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 FAM47AQ5JRC9 791 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 PPP4R3BQ5MIZ7 849 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 MFSD6Q6ZSS7 791 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 OTOP1Q7RTM1 612 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 ANKRD13CQ8N6S4 541 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 GTF3C2Q8WUA4 911 aaPredicted RBP12.67□□□□□ -0.38
LINC00239-201ENST00000556973 MKL1Q969V6 931 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 VCPKMTQ9H867 229 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 INCENPQ9NQS7 918 aa12.67□□□□□ -0.38
LINC00239-201ENST00000556973 MTMR4Q9NYA4 1195 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms