RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 B2RBV5 119 aa8.72□□□□□ -1.01
LINC00643-204ENST00000555934 LRIG2O94898 1065 aa8.72□□□□□ -1.01
LINC00643-204ENST00000555934 MAP7Q14244 749 aa8.72□□□□□ -1.01
LINC00643-204ENST00000555934 EZH1Q92800 747 aaPredicted RBP8.72□□□□□ -1.01
LINC00643-204ENST00000555934 LTBP3Q9NS15 1303 aa8.72□□□□□ -1.01
LINC00643-204ENST00000555934 TNFRSF10CO14798 259 aa8.71□□□□□ -1.02
LINC00643-204ENST00000555934 DHX15O43143 795 aaKnown RBP8.71□□□□□ -1.02
LINC00643-204ENST00000555934 CASP7P55210 303 aa8.71□□□□□ -1.02
LINC00643-204ENST00000555934 CDH24Q86UP0 819 aa8.71□□□□□ -1.02
LINC00643-204ENST00000555934 TOP6BLQ8N6T0 577 aa8.71□□□□□ -1.02
LINC00643-204ENST00000555934 RIN3Q8TB24 985 aa8.71□□□□□ -1.02
LINC00643-204ENST00000555934 CCDC74BQ96LY2 380 aa8.71□□□□□ -1.02
LINC00643-204ENST00000555934 PIF1Q9H611 641 aa8.71□□□□□ -1.02
LINC00643-204ENST00000555934 HMX2A2RU54 273 aa8.7□□□□□ -1.02
LINC00643-204ENST00000555934 RGS13O14921 159 aa8.7□□□□□ -1.02
LINC00643-204ENST00000555934 DDAH1O94760 285 aa8.7□□□□□ -1.02
LINC00643-204ENST00000555934 UBOX5O94941 541 aa8.7□□□□□ -1.02
LINC00643-204ENST00000555934 FURINP09958 794 aa8.7□□□□□ -1.02
LINC00643-204ENST00000555934 CAP2P40123 477 aa8.7□□□□□ -1.02
LINC00643-204ENST00000555934 TDRD10Q5VZ19 366 aaKnown RBP8.7□□□□□ -1.02
LINC00643-204ENST00000555934 PAOXQ6QHF9 649 aa8.7□□□□□ -1.02
LINC00643-204ENST00000555934 C6orf15Q6UXA7 325 aaPredicted RBP8.7□□□□□ -1.02
LINC00643-204ENST00000555934 C19orf47Q8N9M1 422 aaKnown RBP8.7□□□□□ -1.02
LINC00643-204ENST00000555934 CYB5D2Q8WUJ1 264 aa8.7□□□□□ -1.02
LINC00643-204ENST00000555934 ZNF512BQ96KM6 892 aaPredicted RBP8.7□□□□□ -1.02
LINC00643-204ENST00000555934 SLITRK5O94991 958 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 CHMP4BP1P59074 171 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 SERINC3Q13530 473 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 FXNQ16595 210 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 RSPO4Q2I0M5 234 aaPredicted RBP8.69□□□□□ -1.02
LINC00643-204ENST00000555934 NKAPLQ5M9Q1 402 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 NBPF6Q5VWK0 638 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 INTS3Q68E01 1043 aaKnown RBP8.69□□□□□ -1.02
LINC00643-204ENST00000555934 LETMD1Q6P1Q0 360 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 SEZ6L2Q6UXD5 910 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 PRR23CQ6ZRP0 262 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 TMEM192Q8IY95 271 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 TAB3Q8N5C8 712 aaPredicted RBP8.69□□□□□ -1.02
LINC00643-204ENST00000555934 MFSD2AQ8NA29 543 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 NBPF4Q96M43 638 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 SLC6A18Q96N87 628 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 C1GALT1Q9NS00 363 aa8.69□□□□□ -1.02
LINC00643-204ENST00000555934 LEFTY1O75610 366 aa8.68□□□□□ -1.02
LINC00643-204ENST00000555934 GJB6O95452 261 aa8.68□□□□□ -1.02
LINC00643-204ENST00000555934 TP53P04637 393 aaPredicted RBP8.68□□□□□ -1.02
LINC00643-204ENST00000555934 H2AFB1P0C5Y9 115 aa8.68□□□□□ -1.02
LINC00643-204ENST00000555934 H2AFB2P0C5Z0 115 aa8.68□□□□□ -1.02
LINC00643-204ENST00000555934 DDR2Q16832 855 aa8.68□□□□□ -1.02
LINC00643-204ENST00000555934 VHLLQ6RSH7 139 aa8.68□□□□□ -1.02
LINC00643-204ENST00000555934 PPP1R13LQ8WUF5 828 aa8.68□□□□□ -1.02
LINC00643-204ENST00000555934 SRPK1Q96SB4 655 aaKnown RBP8.68□□□□□ -1.02
LINC00643-204ENST00000555934 PRDM10Q9NQV6 1147 aa8.68□□□□□ -1.02
LINC00643-204ENST00000555934 SIRPGQ9P1W8 387 aa8.68□□□□□ -1.02
LINC00643-204ENST00000555934 MAPK8IP1Q9UQF2 711 aa8.68□□□□□ -1.02
LINC00643-204ENST00000555934 RAXQ9Y2V3 346 aa8.68□□□□□ -1.02
LINC00643-204ENST00000555934 GNPTABQ3T906 1256 aa8.67□□□□□ -1.02
LINC00643-204ENST00000555934 CLEC10AQ8IUN9 316 aa8.67□□□□□ -1.02
LINC00643-204ENST00000555934 SHISA5Q8N114 240 aa8.67□□□□□ -1.02
LINC00643-204ENST00000555934 FBXL6Q8N531 539 aa8.67□□□□□ -1.02
LINC00643-204ENST00000555934 TBC1D32Q96NH3 1257 aa8.67□□□□□ -1.02
LINC00643-204ENST00000555934 PSMG3-AS1Q96PY0 264 aa8.67□□□□□ -1.02
LINC00643-204ENST00000555934 FAM83CQ9BQN1 747 aa8.67□□□□□ -1.02
LINC00643-204ENST00000555934 C7orf69Q9H7B7 122 aa8.67□□□□□ -1.02
LINC00643-204ENST00000555934 STOML1Q9UBI4 398 aa8.67□□□□□ -1.02
LINC00643-204ENST00000555934 CDK11AQ9UQ88 783 aaPredicted RBP8.67□□□□□ -1.02
LINC00643-204ENST00000555934 FAM221BA6H8Z2 402 aa8.66□□□□□ -1.02
LINC00643-204ENST00000555934 FAM87AP0C7U9 286 aa8.66□□□□□ -1.02
LINC00643-204ENST00000555934 ADMP35318 185 aa8.66□□□□□ -1.02
LINC00643-204ENST00000555934 KIAA1211LQ6NV74 962 aa8.66□□□□□ -1.02
LINC00643-204ENST00000555934 FAM178BQ8IXR5 827 aa8.66□□□□□ -1.02
LINC00643-204ENST00000555934 TPX2Q9ULW0 747 aaKnown RBP8.66□□□□□ -1.02
LINC00643-204ENST00000555934 CEP131Q9UPN4 1083 aa8.66□□□□□ -1.02
LINC00643-204ENST00000555934 SLC12A7Q9Y666 1083 aa8.66□□□□□ -1.02
LINC00643-204ENST00000555934 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.65□□□□□ -1.02
LINC00643-204ENST00000555934 C9IYK1 514 aa8.65□□□□□ -1.02
LINC00643-204ENST00000555934 DYRK3O43781 588 aa8.65□□□□□ -1.02
LINC00643-204ENST00000555934 CLEC3AO75596 197 aa8.65□□□□□ -1.02
LINC00643-204ENST00000555934 GIMAP6Q6P9H5 292 aa8.65□□□□□ -1.02
LINC00643-204ENST00000555934 PPFIBP1Q86W92 1011 aa8.65□□□□□ -1.02
LINC00643-204ENST00000555934 DNAJB8Q8NHS0 232 aa8.65□□□□□ -1.02
LINC00643-204ENST00000555934 MFSD14AQ96MC6 490 aa8.65□□□□□ -1.02
LINC00643-204ENST00000555934 DEPDC7Q96QD5 511 aa8.65□□□□□ -1.02
LINC00643-204ENST00000555934 DUSP23Q9BVJ7 150 aa8.65□□□□□ -1.02
LINC00643-204ENST00000555934 KRTAP9-2Q9BYQ4 174 aa8.65□□□□□ -1.02
LINC00643-204ENST00000555934 PHAXQ9H814 394 aaKnown RBP8.65□□□□□ -1.02
LINC00643-204ENST00000555934 SNTG2Q9NY99 539 aa8.65□□□□□ -1.02
LINC00643-204ENST00000555934 CNTNAP4Q9C0A0 1308 aa8.64□□□□□ -1.03
LINC00643-204ENST00000555934 CCNFP41002 786 aa8.64□□□□□ -1.03
LINC00643-204ENST00000555934 SLC7A5Q01650 507 aa8.64□□□□□ -1.03
LINC00643-204ENST00000555934 MRM1Q6IN84 353 aaKnown RBP8.64□□□□□ -1.03
LINC00643-204ENST00000555934 KLHL6Q8WZ60 621 aa8.64□□□□□ -1.03
LINC00643-204ENST00000555934 MRFAP1L1Q96HT8 127 aa8.64□□□□□ -1.03
LINC00643-204ENST00000555934 SUCOQ9UBS9 1254 aaKnown RBP8.64□□□□□ -1.03
LINC00643-204ENST00000555934 ZNF214Q9UL59 606 aaPredicted RBP8.64□□□□□ -1.03
LINC00643-204ENST00000555934 SHROOM4Q9ULL8 1493 aa8.64□□□□□ -1.03
LINC00643-204ENST00000555934 ITGB7P26010 798 aa8.63□□□□□ -1.03
LINC00643-204ENST00000555934 PMS1P54277 932 aaKnown RBP8.63□□□□□ -1.03
LINC00643-204ENST00000555934 RASA3Q14644 834 aa8.63□□□□□ -1.03
LINC00643-204ENST00000555934 NFE2L2Q16236 605 aa8.63□□□□□ -1.03
LINC00643-204ENST00000555934 CCDC144CPQ8IYA2 1237 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms