RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 ZYXQ15942 572 aaKnown RBP11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 UBE2Q1Q7Z7E8 422 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 TTC6Q86TZ1 520 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 CLEC10AQ8IUN9 316 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 SLAIN1Q8ND83 568 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 DYNLL2Q96FJ2 89 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 P2RX7Q99572 595 aaKnown RBP11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 PUS7LQ9H0K6 701 aaKnown RBP11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 UNC93B1Q9H1C4 597 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 MCM9Q9NXL9 1143 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 RLFQ13129 1914 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 GREB1LQ9C091 1923 aaPredicted RBP11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 SALL3Q9BXA9 1300 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 LAMA3Q16787 3333 aa11.26□□□□□ -0.61
VIPAS39-207ENST00000555854 C19orf81C9J6K1 198 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 ADCY3O60266 1144 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 INHAP05111 366 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 CCL5P13501 91 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 VCAM1P19320 739 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 GCLCP48506 637 aaPredicted RBP11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 PABPC4Q13310 644 aaKnown RBP eCLIP11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 SEPT2Q15019 361 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 ABCB5Q2M3G0 1257 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 CERKLQ49MI3 558 aaPredicted RBP11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 TMEM106CQ9BVX2 250 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 ECHDC1Q9NTX5 307 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 TMOD4Q9NZQ9 345 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 RBPJLQ9UBG7 517 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 GJD2Q9UKL4 321 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 SZT2Q5T011 3432 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 MYH8P13535 1937 aa11.25□□□□□ -0.61
VIPAS39-207ENST00000555854 PARP14Q460N5 1801 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 CEP290O15078 2479 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 SLC34A2O95436 690 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 POLR3DP05423 398 aaPredicted RBP11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 AKR1B1P15121 316 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 GJA8P48165 433 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 IRX3P78415 501 aaPredicted RBP11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 TRIM32Q13049 653 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 RAB3GAP1Q15042 981 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 Q3C1V9 767 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 KIAA1755Q5JYT7 1200 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 USP17L2Q6R6M4 530 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 SIAH1Q8IUQ4 282 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 PI4K2BQ8TCG2 481 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 PXYLP1Q8TE99 480 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 CRBNQ96SW2 442 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 KIAA1683Q9H0B3 1180 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 PORCNQ9H237 461 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 EPB41L4AQ9HCS5 686 aaPredicted RBP11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 DNAH12Q6ZR08 3092 aa11.24□□□□□ -0.61
VIPAS39-207ENST00000555854 SPDYE16A6NNV3 312 aaPredicted RBP11.23□□□□□ -0.61
VIPAS39-207ENST00000555854 GJB1P08034 283 aa11.23□□□□□ -0.61
VIPAS39-207ENST00000555854 ERVK-9P63128 1117 aa11.23□□□□□ -0.61
VIPAS39-207ENST00000555854 ERVK-24P63145 666 aa11.23□□□□□ -0.61
VIPAS39-207ENST00000555854 KBTBD3Q8NAB2 608 aa11.23□□□□□ -0.61
VIPAS39-207ENST00000555854 TRIB2Q92519 343 aa11.23□□□□□ -0.61
VIPAS39-207ENST00000555854 OSBP2Q969R2 916 aa11.23□□□□□ -0.61
VIPAS39-207ENST00000555854 FEZ1Q99689 392 aa11.23□□□□□ -0.61
VIPAS39-207ENST00000555854 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.23□□□□□ -0.61
VIPAS39-207ENST00000555854 RNF208Q9H0X6 261 aa11.23□□□□□ -0.61
VIPAS39-207ENST00000555854 PAK6Q9NQU5 681 aaPredicted RBP11.23□□□□□ -0.61
VIPAS39-207ENST00000555854 C12orf60Q5U649 245 aa11.22□□□□□ -0.61
VIPAS39-207ENST00000555854 CATSPERGQ6ZRH7 1159 aa11.22□□□□□ -0.61
VIPAS39-207ENST00000555854 C16orf86Q6ZW13 317 aa11.22□□□□□ -0.61
VIPAS39-207ENST00000555854 U2AF1L4Q8WU68 220 aaKnown RBP11.22□□□□□ -0.61
VIPAS39-207ENST00000555854 USP6NLQ92738 828 aa11.22□□□□□ -0.61
VIPAS39-207ENST00000555854 COA7Q96BR5 231 aa11.22□□□□□ -0.61
VIPAS39-207ENST00000555854 ALPK3Q96L96 1907 aa11.22□□□□□ -0.61
VIPAS39-207ENST00000555854 ROBO3Q96MS0 1386 aa11.22□□□□□ -0.61
VIPAS39-207ENST00000555854 PAGR1Q9BTK6 254 aa11.22□□□□□ -0.61
VIPAS39-207ENST00000555854 ATP8A2Q9NTI2 1148 aa11.22□□□□□ -0.61
VIPAS39-207ENST00000555854 BTBD7Q9P203 1132 aa11.22□□□□□ -0.61
VIPAS39-207ENST00000555854 GSG1L2A8MUP6 293 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 USP17L12C9JPN9 530 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 USP17L21D6R901 530 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 M0R2C6 588 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 USP14P54578 494 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 UBXN2AP68543 259 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 CTR9Q6PD62 1173 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 LBX2Q6XYB7 198 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 TMEM179Q6ZVK1 233 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 GPR142Q7Z601 462 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 GPRC5AQ8NFJ5 357 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 STRBPQ96SI9 672 aaKnown RBP11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 RPAP3Q9H6T3 665 aaPredicted RBP11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 SWAP70Q9UH65 585 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 TAOK2Q9UL54 1235 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 SLC4A4Q9Y6R1 1079 aa11.21□□□□□ -0.61
VIPAS39-207ENST00000555854 ZNF236Q9UL36 1845 aa11.21□□□□□ -0.62
VIPAS39-207ENST00000555854 TTC41PQ6P2S7 1318 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 USP17L15C9J2P7 530 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 USP17L13C9JLJ4 530 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 USP17L11C9JVI0 530 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 USP17L18D6R9N7 530 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 USP17L22D6RA61 530 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 USP17L17D6RBQ6 530 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 USP17L19D6RCP7 530 aa11.2□□□□□ -0.62
VIPAS39-207ENST00000555854 USP17L20D6RJB6 530 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms