RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 SYNE3Q6ZMZ3 975 aa11.94□□□□□ -0.5
SRP54-208ENST00000555557 APOBEC3FQ8IUX4 373 aaKnown RBP11.94□□□□□ -0.5
SRP54-208ENST00000555557 TMEM47Q9BQJ4 181 aa11.94□□□□□ -0.5
SRP54-208ENST00000555557 FAM217BQ9NTX9 383 aaPredicted RBP11.94□□□□□ -0.5
SRP54-208ENST00000555557 MTMR4Q9NYA4 1195 aa11.94□□□□□ -0.5
SRP54-208ENST00000555557 FZD1Q9UP38 647 aa11.94□□□□□ -0.5
SRP54-208ENST00000555557 SMC3Q9UQE7 1217 aa11.94□□□□□ -0.5
SRP54-208ENST00000555557 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.94□□□□□ -0.5
SRP54-208ENST00000555557 GOLGA8AA7E2F4 631 aa11.94□□□□□ -0.5
SRP54-208ENST00000555557 NT5C2P49902 561 aa11.94□□□□□ -0.5
SRP54-208ENST00000555557 ABCB5Q2M3G0 1257 aa11.94□□□□□ -0.5
SRP54-208ENST00000555557 CATIPQ7Z7H3 387 aa11.94□□□□□ -0.5
SRP54-208ENST00000555557 CMTR1Q8N1G2 835 aaKnown RBP11.94□□□□□ -0.5
SRP54-208ENST00000555557 DDX11Q96FC9 970 aa11.94□□□□□ -0.5
SRP54-208ENST00000555557 CCDC17Q96LX7 622 aa11.94□□□□□ -0.5
SRP54-208ENST00000555557 TAF1DQ9H5J8 278 aaPredicted RBP11.94□□□□□ -0.5
SRP54-208ENST00000555557 KAT14Q9H8E8 782 aa11.94□□□□□ -0.5
SRP54-208ENST00000555557 IGKV6D-41A0A0C4DH26 115 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 ADM5C9JUS6 153 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 TBC1D12O60347 775 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 GH2P01242 217 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 GJB2P29033 226 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 GUCY1A2P33402 732 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 ATP2B2Q01814 1243 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 TROAPQ12815 778 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 PKP1Q13835 747 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 SEPT2Q15019 361 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 RAB3GAP1Q15042 981 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 USP50Q70EL3 339 aaPredicted RBP11.93□□□□□ -0.5
SRP54-208ENST00000555557 RASGRP2Q7LDG7 609 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 FANCBQ8NB91 859 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 PNMA1Q8ND90 353 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 NSUN7Q8NE18 718 aaKnown RBP11.93□□□□□ -0.5
SRP54-208ENST00000555557 ANKS1AQ92625 1134 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 DCPSQ96C86 337 aaKnown RBP11.93□□□□□ -0.5
SRP54-208ENST00000555557 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.93□□□□□ -0.5
SRP54-208ENST00000555557 CLIP2Q9UDT6 1046 aa11.93□□□□□ -0.5
SRP54-208ENST00000555557 POTEIP0CG38 1075 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 POTEJP0CG39 1038 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 MAP3K10Q02779 954 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 CCDC178Q5BJE1 867 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 LRRC47Q8N1G4 583 aaKnown RBP11.92□□□□□ -0.5
SRP54-208ENST00000555557 CCDC82Q8N4S0 544 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 CWC22Q9HCG8 908 aaKnown RBP11.92□□□□□ -0.5
SRP54-208ENST00000555557 PLIN4Q96Q06 1357 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 PTPDC1A2A3K4 754 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 IQCA1LA6NCM1 817 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 PHF20L1A8MW92 1017 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 CPLX1O14810 134 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 NOVP48745 357 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 RTN1Q16799 776 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 ZNF526Q8TF50 670 aaPredicted RBP11.92□□□□□ -0.5
SRP54-208ENST00000555557 RRAGCQ9HB90 399 aa11.92□□□□□ -0.5
SRP54-208ENST00000555557 TTLL1O95922 423 aa11.91□□□□□ -0.5
SRP54-208ENST00000555557 TOP1P11387 765 aaKnown RBP11.91□□□□□ -0.5
SRP54-208ENST00000555557 EEF2P13639 858 aaKnown RBP11.91□□□□□ -0.5
SRP54-208ENST00000555557 PRKG1Q13976 671 aa11.91□□□□□ -0.5
SRP54-208ENST00000555557 TMEM179Q6ZVK1 233 aa11.91□□□□□ -0.5
SRP54-208ENST00000555557 KRT26Q7Z3Y9 468 aa11.91□□□□□ -0.5
SRP54-208ENST00000555557 USP48Q86UV5 1035 aa11.91□□□□□ -0.5
SRP54-208ENST00000555557 SIAH1Q8IUQ4 282 aa11.91□□□□□ -0.5
SRP54-208ENST00000555557 SULF1Q8IWU6 871 aa11.91□□□□□ -0.5
SRP54-208ENST00000555557 PHKBQ93100 1093 aa11.91□□□□□ -0.5
SRP54-208ENST00000555557 CABP5Q9NP86 173 aa11.91□□□□□ -0.5
SRP54-208ENST00000555557 TAOK2Q9UL54 1235 aa11.91□□□□□ -0.5
SRP54-208ENST00000555557 PITPNM2Q9BZ72 1349 aa11.91□□□□□ -0.5
SRP54-208ENST00000555557 UBE2Q2LH0YL09 131 aa11.9□□□□□ -0.5
SRP54-208ENST00000555557 DHX16O60231 1041 aaKnown RBP11.9□□□□□ -0.5
SRP54-208ENST00000555557 DDAH1O94760 285 aa11.9□□□□□ -0.5
SRP54-208ENST00000555557 CAP2P40123 477 aa11.9□□□□□ -0.5
SRP54-208ENST00000555557 NTRK3Q16288 839 aa11.9□□□□□ -0.5
SRP54-208ENST00000555557 CCDC84Q86UT8 332 aaPredicted RBP11.9□□□□□ -0.5
SRP54-208ENST00000555557 SMARCC2Q8TAQ2 1214 aa11.9□□□□□ -0.5
SRP54-208ENST00000555557 LLPHQ9BRT6 129 aaKnown RBP11.9□□□□□ -0.5
SRP54-208ENST00000555557 KANSL2Q9H9L4 492 aa11.9□□□□□ -0.5
SRP54-208ENST00000555557 CHMP5Q9NZZ3 219 aa11.9□□□□□ -0.5
SRP54-208ENST00000555557 RAD21O60216 631 aa11.9□□□□□ -0.51
SRP54-208ENST00000555557 PLEKHA8P1O95397 391 aa11.9□□□□□ -0.51
SRP54-208ENST00000555557 GOLGA8HP0CJ92 632 aa11.9□□□□□ -0.51
SRP54-208ENST00000555557 CALM1P0DP23 149 aa11.9□□□□□ -0.51
SRP54-208ENST00000555557 CALM2P0DP24 149 aa11.9□□□□□ -0.51
SRP54-208ENST00000555557 CALM3P0DP25 149 aa11.9□□□□□ -0.51
SRP54-208ENST00000555557 FDPSP14324 419 aaKnown RBP11.9□□□□□ -0.51
SRP54-208ENST00000555557 INPP5BP32019 993 aa11.9□□□□□ -0.51
SRP54-208ENST00000555557 ICA1Q05084 483 aa11.9□□□□□ -0.51
SRP54-208ENST00000555557 FOXD4L5Q5VV16 416 aaPredicted RBP11.9□□□□□ -0.51
SRP54-208ENST00000555557 STAG2Q8N3U4 1231 aa11.9□□□□□ -0.51
SRP54-208ENST00000555557 ZC3H15Q8WU90 426 aaKnown RBP11.9□□□□□ -0.51
SRP54-208ENST00000555557 FOXD4L4Q8WXT5 416 aaPredicted RBP11.9□□□□□ -0.51
SRP54-208ENST00000555557 ZBTB21Q9ULJ3 1066 aa11.9□□□□□ -0.51
SRP54-208ENST00000555557 CLEC11AQ9Y240 323 aa11.9□□□□□ -0.51
SRP54-208ENST00000555557 PPP2R3BQ9Y5P8 575 aa11.9□□□□□ -0.51
SRP54-208ENST00000555557 POLR2AP24928 1970 aaKnown RBP11.9□□□□□ -0.51
SRP54-208ENST00000555557 A0A1W2PRG0 241 aa11.89□□□□□ -0.51
SRP54-208ENST00000555557 USP17L5A8MUK1 530 aa11.89□□□□□ -0.51
SRP54-208ENST00000555557 SYT1P21579 422 aa11.89□□□□□ -0.51
SRP54-208ENST00000555557 FOSBP53539 338 aa11.89□□□□□ -0.51
SRP54-208ENST00000555557 RCAN1P53805 252 aa11.89□□□□□ -0.51
SRP54-208ENST00000555557 USP17L2Q6R6M4 530 aa11.89□□□□□ -0.51
SRP54-208ENST00000555557 PNMA8AQ86V59 439 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms