RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 TTBK2Q6IQ55 1244 aa7.25□□□□□ -1.25
SCFD1-216ENST00000555550 TMPRSS7Q7RTY8 843 aa7.25□□□□□ -1.25
SCFD1-216ENST00000555550 FBF1Q8TES7 1133 aa7.25□□□□□ -1.25
SCFD1-216ENST00000555550 ANKRD24Q8TF21 1146 aa7.25□□□□□ -1.25
SCFD1-216ENST00000555550 Q96M66 194 aa7.25□□□□□ -1.25
SCFD1-216ENST00000555550 SLC26A8Q96RN1 970 aa7.25□□□□□ -1.25
SCFD1-216ENST00000555550 KRTAP9-3Q9BYQ3 159 aa7.25□□□□□ -1.25
SCFD1-216ENST00000555550 RNF32Q9H0A6 362 aa7.25□□□□□ -1.25
SCFD1-216ENST00000555550 DUSP15Q9H1R2 295 aaPredicted RBP7.25□□□□□ -1.25
SCFD1-216ENST00000555550 PCDHB5Q9Y5E4 795 aa7.25□□□□□ -1.25
SCFD1-216ENST00000555550 GFRA2O00451 464 aa7.24□□□□□ -1.25
SCFD1-216ENST00000555550 GIPC1O14908 333 aa7.24□□□□□ -1.25
SCFD1-216ENST00000555550 SP110Q9HB58 689 aa7.24□□□□□ -1.25
SCFD1-216ENST00000555550 TJP2Q9UDY2 1190 aa7.24□□□□□ -1.25
SCFD1-216ENST00000555550 BRD1O95696 1058 aa7.23□□□□□ -1.25
SCFD1-216ENST00000555550 SEPT6Q14141 434 aa7.23□□□□□ -1.25
SCFD1-216ENST00000555550 ALG1LQ6GMV1 187 aa7.23□□□□□ -1.25
SCFD1-216ENST00000555550 C12orf49Q9H741 205 aa7.23□□□□□ -1.25
SCFD1-216ENST00000555550 TTF2Q9UNY4 1162 aaKnown RBP7.23□□□□□ -1.25
SCFD1-216ENST00000555550 SV2BQ7L1I2 683 aa7.22□□□□□ -1.25
SCFD1-216ENST00000555550 PIWIL2Q8TC59 973 aaKnown RBP7.22□□□□□ -1.25
SCFD1-216ENST00000555550 COX4I2Q96KJ9 171 aa7.22□□□□□ -1.25
SCFD1-216ENST00000555550 FAM8A1Q9UBU6 413 aa7.22□□□□□ -1.25
SCFD1-216ENST00000555550 SPG7Q9UQ90 795 aa7.22□□□□□ -1.25
SCFD1-216ENST00000555550 ADAMTS20P59510 1910 aa7.22□□□□□ -1.25
SCFD1-216ENST00000555550 PGRP06401 933 aa7.21□□□□□ -1.26
SCFD1-216ENST00000555550 BMP7P18075 431 aa7.21□□□□□ -1.26
SCFD1-216ENST00000555550 FMR1Q06787 632 aaKnown RBP eCLIP7.21□□□□□ -1.26
SCFD1-216ENST00000555550 TIGD5Q53EQ6 642 aa7.21□□□□□ -1.26
SCFD1-216ENST00000555550 ZNF605Q86T29 641 aa7.21□□□□□ -1.26
SCFD1-216ENST00000555550 MCOLN1Q9GZU1 580 aa7.21□□□□□ -1.26
SCFD1-216ENST00000555550 MYOCOSA0A1B0GUC4 107 aa7.2□□□□□ -1.26
SCFD1-216ENST00000555550 DLG4P78352 724 aa7.2□□□□□ -1.26
SCFD1-216ENST00000555550 EGR3Q06889 387 aa7.2□□□□□ -1.26
SCFD1-216ENST00000555550 GAB4Q2WGN9 574 aa7.2□□□□□ -1.26
SCFD1-216ENST00000555550 MRPL41Q8IXM3 137 aaKnown RBP7.2□□□□□ -1.26
SCFD1-216ENST00000555550 TMEM87BQ96K49 555 aa7.2□□□□□ -1.26
SCFD1-216ENST00000555550 DUSP13Q9UII6 198 aa7.2□□□□□ -1.26
SCFD1-216ENST00000555550 GNEQ9Y223 722 aaKnown RBP7.2□□□□□ -1.26
SCFD1-216ENST00000555550 ZGLP1P0C6A0 271 aa7.19□□□□□ -1.26
SCFD1-216ENST00000555550 ETV3P41162 512 aa7.19□□□□□ -1.26
SCFD1-216ENST00000555550 MAP3K11Q16584 847 aa7.19□□□□□ -1.26
SCFD1-216ENST00000555550 SLC6A19Q695T7 634 aa7.19□□□□□ -1.26
SCFD1-216ENST00000555550 DNAJB8Q8NHS0 232 aa7.19□□□□□ -1.26
SCFD1-216ENST00000555550 RELTQ969Z4 430 aa7.19□□□□□ -1.26
SCFD1-216ENST00000555550 SGPP1Q9BX95 441 aa7.19□□□□□ -1.26
SCFD1-216ENST00000555550 PARD6AQ9NPB6 346 aa7.19□□□□□ -1.26
SCFD1-216ENST00000555550 CEP131Q9UPN4 1083 aa7.19□□□□□ -1.26
SCFD1-216ENST00000555550 LMNB1P20700 586 aa7.18□□□□□ -1.26
SCFD1-216ENST00000555550 ATP2B2Q01814 1243 aa7.18□□□□□ -1.26
SCFD1-216ENST00000555550 TMEM132EQ6IEE7 984 aa7.18□□□□□ -1.26
SCFD1-216ENST00000555550 ZSCAN29Q8IWY8 852 aaPredicted RBP7.18□□□□□ -1.26
SCFD1-216ENST00000555550 PDZD8Q8NEN9 1154 aa7.18□□□□□ -1.26
SCFD1-216ENST00000555550 BAHD1Q8TBE0 780 aaPredicted RBP7.18□□□□□ -1.26
SCFD1-216ENST00000555550 TRIT1Q9H3H1 467 aaKnown RBP7.18□□□□□ -1.26
SCFD1-216ENST00000555550 ZCCHC4Q9H5U6 513 aa7.18□□□□□ -1.26
SCFD1-216ENST00000555550 UPK3BL1B0FP48 263 aa7.17□□□□□ -1.26
SCFD1-216ENST00000555550 UPK3BL2E5RIL1 263 aa7.17□□□□□ -1.26
SCFD1-216ENST00000555550 LRRN2O75325 713 aa7.17□□□□□ -1.26
SCFD1-216ENST00000555550 SRFP11831 508 aa7.17□□□□□ -1.26
SCFD1-216ENST00000555550 GALK1P51570 392 aa7.17□□□□□ -1.26
SCFD1-216ENST00000555550 CCDC85BQ15834 202 aaPredicted RBP7.17□□□□□ -1.26
SCFD1-216ENST00000555550 MCATQ8IVS2 390 aaKnown RBP7.17□□□□□ -1.26
SCFD1-216ENST00000555550 OXR1Q8N573 874 aa7.17□□□□□ -1.26
SCFD1-216ENST00000555550 ACSF2Q96CM8 615 aaPredicted RBP7.17□□□□□ -1.26
SCFD1-216ENST00000555550 GPATCH2Q9NW75 528 aa7.17□□□□□ -1.26
SCFD1-216ENST00000555550 TSPYL5Q86VY4 417 aaPredicted RBP7.16□□□□□ -1.26
SCFD1-216ENST00000555550 PPP1R13LQ8WUF5 828 aa7.16□□□□□ -1.26
SCFD1-216ENST00000555550 SLC6A17Q9H1V8 727 aa7.16□□□□□ -1.26
SCFD1-216ENST00000555550 EBF1Q9UH73 591 aa7.16□□□□□ -1.26
SCFD1-216ENST00000555550 CNOT6Q9ULM6 557 aaKnown RBP7.16□□□□□ -1.26
SCFD1-216ENST00000555550 PCDHA11Q9Y5I1 949 aa7.16□□□□□ -1.26
SCFD1-216ENST00000555550 LTKP29376 864 aa7.15□□□□□ -1.26
SCFD1-216ENST00000555550 PDE6BP35913 854 aa7.15□□□□□ -1.26
SCFD1-216ENST00000555550 RPS26P62854 115 aaKnown RBP7.15□□□□□ -1.26
SCFD1-216ENST00000555550 IRF2BP1Q8IU81 584 aa7.15□□□□□ -1.26
SCFD1-216ENST00000555550 LILRA2Q8N149 483 aa7.15□□□□□ -1.26
SCFD1-216ENST00000555550 DTWD2Q8NBA8 298 aa7.15□□□□□ -1.26
SCFD1-216ENST00000555550 JARID2Q92833 1246 aaPredicted RBP7.15□□□□□ -1.26
SCFD1-216ENST00000555550 INTS4Q96HW7 963 aaKnown RBP7.15□□□□□ -1.26
SCFD1-216ENST00000555550 ASB16Q96NS5 453 aa7.15□□□□□ -1.26
SCFD1-216ENST00000555550 GPR62Q9BZJ7 368 aa7.15□□□□□ -1.26
SCFD1-216ENST00000555550 TACC3Q9Y6A5 838 aa7.15□□□□□ -1.26
SCFD1-216ENST00000555550 IVNS1ABPQ9Y6Y0 642 aa7.15□□□□□ -1.26
SCFD1-216ENST00000555550 A0A0G2JLL6 359 aaPredicted RBP7.14□□□□□ -1.27
SCFD1-216ENST00000555550 FOXD2O60548 495 aaPredicted RBP7.14□□□□□ -1.27
SCFD1-216ENST00000555550 KCNA1Q09470 495 aa7.14□□□□□ -1.27
SCFD1-216ENST00000555550 AGMOQ6ZNB7 445 aa7.14□□□□□ -1.27
SCFD1-216ENST00000555550 ZNF552Q9H707 407 aaPredicted RBP7.14□□□□□ -1.27
SCFD1-216ENST00000555550 GCM1Q9NP62 436 aa7.14□□□□□ -1.27
SCFD1-216ENST00000555550 YBX2Q9Y2T7 364 aaKnown RBP7.14□□□□□ -1.27
SCFD1-216ENST00000555550 CORINQ9Y5Q5 1042 aa7.14□□□□□ -1.27
SCFD1-216ENST00000555550 FITM1A5D6W6 292 aa7.13□□□□□ -1.27
SCFD1-216ENST00000555550 PSPNO60542 156 aa7.13□□□□□ -1.27
SCFD1-216ENST00000555550 PEX10O60683 326 aa7.13□□□□□ -1.27
SCFD1-216ENST00000555550 LDHBP07195 334 aaKnown RBP7.13□□□□□ -1.27
SCFD1-216ENST00000555550 P4HBP07237 508 aaKnown RBP7.13□□□□□ -1.27
SCFD1-216ENST00000555550 PDE4BQ07343 736 aa7.13□□□□□ -1.27
SCFD1-216ENST00000555550 SIRT2Q8IXJ6 389 aa7.13□□□□□ -1.27
SCFD1-216ENST00000555550 MIR1-1HGQ9H1L0 117 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms