RNA–Protein interactions for RNA: ENST00000553846.1

PRKCH-208, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-208	ENST00000553846	TEX11	Q8IYF3	940 aa		11.24	□□□□□ -0.61
PRKCH-208	ENST00000553846	PAGR1	Q9BTK6	254 aa		11.24	□□□□□ -0.61
PRKCH-208	ENST00000553846	DHX36	Q9H2U1	1008 aa	Known RBP	11.24	□□□□□ -0.61
PRKCH-208	ENST00000553846	BTBD7	Q9P203	1132 aa		11.24	□□□□□ -0.61
PRKCH-208	ENST00000553846	ATP11B	Q9Y2G3	1177 aa		11.24	□□□□□ -0.61
PRKCH-208	ENST00000553846	PARP14	Q460N5	1801 aa		11.23	□□□□□ -0.61
PRKCH-208	ENST00000553846	GDF11	O95390	407 aa		11.23	□□□□□ -0.61
PRKCH-208	ENST00000553846	PLA2G5	P39877	138 aa		11.23	□□□□□ -0.61
PRKCH-208	ENST00000553846	MCAM	P43121	646 aa		11.23	□□□□□ -0.61
PRKCH-208	ENST00000553846	PPP4C	P60510	307 aa		11.23	□□□□□ -0.61
PRKCH-208	ENST00000553846	MVP	Q14764	893 aa	Known RBP	11.23	□□□□□ -0.61
PRKCH-208	ENST00000553846	GJC2	Q5T442	439 aa	Predicted RBP	11.23	□□□□□ -0.61
PRKCH-208	ENST00000553846	OLFML2B	Q68BL8	750 aa		11.23	□□□□□ -0.61
PRKCH-208	ENST00000553846	SPATA5	Q8NB90	893 aa		11.23	□□□□□ -0.61
PRKCH-208	ENST00000553846	NDUFB9	Q9Y6M9	179 aa		11.23	□□□□□ -0.61
PRKCH-208	ENST00000553846	ROBO3	Q96MS0	1386 aa		11.23	□□□□□ -0.61
PRKCH-208	ENST00000553846	SPDYE16	A6NNV3	312 aa	Predicted RBP	11.22	□□□□□ -0.61
PRKCH-208	ENST00000553846	UBTFL1	P0CB47	393 aa	Predicted RBP	11.22	□□□□□ -0.61
PRKCH-208	ENST00000553846	MYH1	P12882	1939 aa		11.22	□□□□□ -0.61
PRKCH-208	ENST00000553846	VCAM1	P19320	739 aa		11.22	□□□□□ -0.61
PRKCH-208	ENST00000553846	GSTO1	P78417	241 aa		11.22	□□□□□ -0.61
PRKCH-208	ENST00000553846	TFCP2	Q12800	502 aa		11.22	□□□□□ -0.61
PRKCH-208	ENST00000553846	MTX1	Q13505	466 aa		11.22	□□□□□ -0.61
PRKCH-208	ENST00000553846	TATDN1	Q6P1N9	297 aa		11.22	□□□□□ -0.61
PRKCH-208	ENST00000553846	USP17L2	Q6R6M4	530 aa		11.22	□□□□□ -0.61
PRKCH-208	ENST00000553846	CATSPERG	Q6ZRH7	1159 aa		11.22	□□□□□ -0.61
PRKCH-208	ENST00000553846	PRKAG2	Q9UGJ0	569 aa		11.22	□□□□□ -0.61
PRKCH-208	ENST00000553846	KIAA0355	O15063	1070 aa		11.21	□□□□□ -0.61
PRKCH-208	ENST00000553846	SEPT4	O43236	478 aa		11.21	□□□□□ -0.61
PRKCH-208	ENST00000553846	LDHC	P07864	332 aa		11.21	□□□□□ -0.61
PRKCH-208	ENST00000553846	LRRC41	Q15345	812 aa		11.21	□□□□□ -0.61
PRKCH-208	ENST00000553846	FOXP4	Q8IVH2	680 aa	Predicted RBP	11.21	□□□□□ -0.61
PRKCH-208	ENST00000553846	KIAA1683	Q9H0B3	1180 aa		11.21	□□□□□ -0.61
PRKCH-208	ENST00000553846	MRS2	Q9HD23	443 aa		11.21	□□□□□ -0.61
PRKCH-208	ENST00000553846	PALD1	Q9ULE6	856 aa		11.21	□□□□□ -0.61
PRKCH-208	ENST00000553846	SMCHD1	A6NHR9	2005 aa		11.21	□□□□□ -0.62
PRKCH-208	ENST00000553846	USP17L15	C9J2P7	530 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	USP17L13	C9JLJ4	530 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	USP17L11	C9JVI0	530 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	USP17L18	D6R9N7	530 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	USP17L22	D6RA61	530 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	USP17L17	D6RBQ6	530 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	USP17L19	D6RCP7	530 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	USP17L20	D6RJB6	530 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	GH2	P01242	217 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	DNAJB2	P25686	324 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	CCNA1	P78396	465 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	ATP2B2	Q01814	1243 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	TLE2	Q04725	743 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	USP17L24	Q0WX57	530 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	FAM47A	Q5JRC9	791 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	RASIP1	Q5U651	963 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	MAPKAPK5	Q8IW41	473 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	ARRDC4	Q8NCT1	418 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	ACER1	Q8TDN7	264 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	TGFBRAP1	Q8WUH2	860 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	RNPC3	Q96LT9	517 aa	Known RBP	11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	MEIS3	Q99687	375 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	PRDM5	Q9NQX1	630 aa	Predicted RBP	11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	PHF24	Q9UPV7	400 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	MYO9B	Q13459	2157 aa		11.2	□□□□□ -0.62
PRKCH-208	ENST00000553846	KBTBD13	C9JR72	458 aa		11.19	□□□□□ -0.62
PRKCH-208	ENST00000553846	COBL	O75128	1261 aa		11.19	□□□□□ -0.62
PRKCH-208	ENST00000553846	GLRX3	O76003	335 aa	Known RBP	11.19	□□□□□ -0.62
PRKCH-208	ENST00000553846	ADORA2A	P29274	412 aa		11.19	□□□□□ -0.62
PRKCH-208	ENST00000553846	CNGA1	P29973	690 aa		11.19	□□□□□ -0.62
PRKCH-208	ENST00000553846	GUCY1A2	P33402	732 aa		11.19	□□□□□ -0.62
PRKCH-208	ENST00000553846	ADCYAP1R1	P41586	468 aa		11.19	□□□□□ -0.62
PRKCH-208	ENST00000553846	ALDH1L2	Q3SY69	923 aa		11.19	□□□□□ -0.62
PRKCH-208	ENST00000553846	ANO1	Q5XXA6	986 aa		11.19	□□□□□ -0.62
PRKCH-208	ENST00000553846	RAI14	Q9P0K7	980 aa		11.19	□□□□□ -0.62
PRKCH-208	ENST00000553846	AKAP2	Q9Y2D5	859 aa		11.19	□□□□□ -0.62
PRKCH-208	ENST00000553846	PLXNA1	Q9UIW2	1896 aa		11.19	□□□□□ -0.62
PRKCH-208	ENST00000553846	AKNAD1	Q5T1N1	836 aa		11.18	□□□□□ -0.62
PRKCH-208	ENST00000553846	CCAR1	Q8IX12	1150 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-208	ENST00000553846	ATXN2L	Q8WWM7	1075 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-208	ENST00000553846	ASB2	Q96Q27	587 aa		11.18	□□□□□ -0.62
PRKCH-208	ENST00000553846	MOV10L1	Q9BXT6	1211 aa	Known RBP	11.18	□□□□□ -0.62
PRKCH-208	ENST00000553846	EHD4	Q9H223	541 aa		11.18	□□□□□ -0.62
PRKCH-208	ENST00000553846	ZNF576	Q9H609	170 aa		11.18	□□□□□ -0.62
PRKCH-208	ENST00000553846	ZNFX1	Q9P2E3	1918 aa	Known RBP	11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	SYNGAP1	Q96PV0	1343 aa		11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	CYP2E1	P05181	493 aa	Predicted RBP	11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	CLTB	P09497	229 aa		11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	PLCG2	P16885	1265 aa		11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	ADGRE1	Q14246	886 aa		11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	ZYX	Q15942	572 aa	Known RBP	11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	ANKRD33	Q7Z3H0	272 aa		11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	SHCBP1	Q8NEM2	672 aa		11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	ADAMTS19	Q8TE59	1207 aa		11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	FERMT2	Q96AC1	680 aa		11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	SAP30BP	Q9UHR5	308 aa	Known RBP	11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	TACC3	Q9Y6A5	838 aa		11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	GBF1	Q92538	1859 aa		11.17	□□□□□ -0.62
PRKCH-208	ENST00000553846	STRN	O43815	780 aa		11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	SHMT1	P34896	483 aa		11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	FAAP100	Q0VG06	881 aa		11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	KIAA1755	Q5JYT7	1200 aa		11.16	□□□□□ -0.62
PRKCH-208	ENST00000553846	PRAMEF19	Q5SWL8	479 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms