RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 CNMDO75829 334 aa14.42□□□□□ -0.1
CKAP4-202ENST00000552828 RLBP1P12271 317 aa14.42□□□□□ -0.1
CKAP4-202ENST00000552828 USP14P54578 494 aa14.42□□□□□ -0.1
CKAP4-202ENST00000552828 USP17L24Q0WX57 530 aa14.42□□□□□ -0.1
CKAP4-202ENST00000552828 LBX2Q6XYB7 198 aa14.42□□□□□ -0.1
CKAP4-202ENST00000552828 CATSPERGQ6ZRH7 1159 aa14.42□□□□□ -0.1
CKAP4-202ENST00000552828 TTC6Q86TZ1 520 aa14.42□□□□□ -0.1
CKAP4-202ENST00000552828 MAGEB6Q8N7X4 407 aa14.42□□□□□ -0.1
CKAP4-202ENST00000552828 MIGA1Q8NAN2 632 aa14.42□□□□□ -0.1
CKAP4-202ENST00000552828 LRCH3Q96II8 777 aa14.42□□□□□ -0.1
CKAP4-202ENST00000552828 APBA2Q99767 749 aa14.42□□□□□ -0.1
CKAP4-202ENST00000552828 KIAA1683Q9H0B3 1180 aa14.42□□□□□ -0.1
CKAP4-202ENST00000552828 USP5P45974 858 aa14.41□□□□□ -0.1
CKAP4-202ENST00000552828 MAP3K12Q12852 859 aa14.41□□□□□ -0.1
CKAP4-202ENST00000552828 MAP2K5Q13163 448 aa14.41□□□□□ -0.1
CKAP4-202ENST00000552828 CCL14Q16627 93 aa14.41□□□□□ -0.1
CKAP4-202ENST00000552828 CERKLQ49MI3 558 aaPredicted RBP14.41□□□□□ -0.1
CKAP4-202ENST00000552828 CEP85Q6P2H3 762 aa14.41□□□□□ -0.1
CKAP4-202ENST00000552828 ITPRIPQ8IWB1 547 aa14.41□□□□□ -0.1
CKAP4-202ENST00000552828 CCAR1Q8IX12 1150 aaKnown RBP14.41□□□□□ -0.1
CKAP4-202ENST00000552828 RIOK1Q9BRS2 568 aaKnown RBP14.41□□□□□ -0.1
CKAP4-202ENST00000552828 PAGR1Q9BTK6 254 aa14.41□□□□□ -0.1
CKAP4-202ENST00000552828 ANTXR1Q9H6X2 564 aa14.41□□□□□ -0.1
CKAP4-202ENST00000552828 ZMYND8Q9ULU4 1186 aaPredicted RBP14.41□□□□□ -0.1
CKAP4-202ENST00000552828 CDK5RAP2Q96SN8 1893 aa14.41□□□□□ -0.1
CKAP4-202ENST00000552828 ALPK3Q96L96 1907 aa14.41□□□□□ -0.1
CKAP4-202ENST00000552828 GLRX3O76003 335 aaKnown RBP14.4□□□□□ -0.1
CKAP4-202ENST00000552828 HOXC6P09630 235 aa14.4□□□□□ -0.1
CKAP4-202ENST00000552828 CCND3P30281 292 aaPredicted RBP14.4□□□□□ -0.1
CKAP4-202ENST00000552828 SHMT1P34896 483 aa14.4□□□□□ -0.1
CKAP4-202ENST00000552828 MAGEA10P43363 369 aaPredicted RBP14.4□□□□□ -0.1
CKAP4-202ENST00000552828 CCNA1P78396 465 aa14.4□□□□□ -0.1
CKAP4-202ENST00000552828 ABCB5Q2M3G0 1257 aa14.4□□□□□ -0.1
CKAP4-202ENST00000552828 LRIT3Q3SXY7 679 aa14.4□□□□□ -0.1
CKAP4-202ENST00000552828 ERC1Q8IUD2 1116 aa14.4□□□□□ -0.1
CKAP4-202ENST00000552828 ACER1Q8TDN7 264 aa14.4□□□□□ -0.1
CKAP4-202ENST00000552828 PANK1Q8TE04 598 aa14.4□□□□□ -0.1
CKAP4-202ENST00000552828 EDC3Q96F86 508 aaKnown RBP14.4□□□□□ -0.1
CKAP4-202ENST00000552828 NDUFB9Q9Y6M9 179 aa14.4□□□□□ -0.1
CKAP4-202ENST00000552828 SLC15A5A6NIM6 579 aa14.39□□□□□ -0.11
CKAP4-202ENST00000552828 IGHA2P01877 340 aa14.39□□□□□ -0.11
CKAP4-202ENST00000552828 VCAM1P19320 739 aa14.39□□□□□ -0.11
CKAP4-202ENST00000552828 PLCD1P51178 756 aa14.39□□□□□ -0.11
CKAP4-202ENST00000552828 GABPAQ06546 454 aa14.39□□□□□ -0.11
CKAP4-202ENST00000552828 RAB3GAP1Q15042 981 aa14.39□□□□□ -0.11
CKAP4-202ENST00000552828 FEZ1Q99689 392 aa14.39□□□□□ -0.11
CKAP4-202ENST00000552828 DDX60LQ5H9U9 1706 aaKnown RBP14.38□□□□□ -0.11
CKAP4-202ENST00000552828 SYN1P17600 705 aa14.38□□□□□ -0.11
CKAP4-202ENST00000552828 PTPREP23469 700 aa14.38□□□□□ -0.11
CKAP4-202ENST00000552828 GUCY1A2P33402 732 aa14.38□□□□□ -0.11
CKAP4-202ENST00000552828 GRB14Q14449 540 aa14.38□□□□□ -0.11
CKAP4-202ENST00000552828 ZYXQ15942 572 aaKnown RBP14.38□□□□□ -0.11
CKAP4-202ENST00000552828 AACSQ86V21 672 aa14.38□□□□□ -0.11
CKAP4-202ENST00000552828 TDHQ8IZJ6 230 aa14.38□□□□□ -0.11
CKAP4-202ENST00000552828 CABP5Q9NP86 173 aa14.38□□□□□ -0.11
CKAP4-202ENST00000552828 FLRT1Q9NZU1 646 aa14.38□□□□□ -0.11
CKAP4-202ENST00000552828 BTBD7Q9P203 1132 aa14.38□□□□□ -0.11
CKAP4-202ENST00000552828 DNAH12Q6ZR08 3092 aa14.38□□□□□ -0.11
CKAP4-202ENST00000552828 SPDYE16A6NNV3 312 aaPredicted RBP14.37□□□□□ -0.11
CKAP4-202ENST00000552828 TTF1Q15361 905 aaPredicted RBP14.37□□□□□ -0.11
CKAP4-202ENST00000552828 LRRC26Q2I0M4 334 aa14.37□□□□□ -0.11
CKAP4-202ENST00000552828 MFSD14CQ5VZR4 134 aa14.37□□□□□ -0.11
CKAP4-202ENST00000552828 EXOC6BQ9Y2D4 811 aa14.37□□□□□ -0.11
CKAP4-202ENST00000552828 MYO5AQ9Y4I1 1855 aaKnown RBP14.37□□□□□ -0.11
CKAP4-202ENST00000552828 MAGEB6P1A0A0J9YX57 407 aa14.36□□□□□ -0.11
CKAP4-202ENST00000552828 PDE6AP16499 860 aa14.36□□□□□ -0.11
CKAP4-202ENST00000552828 HSP90AB4PQ58FF6 505 aa14.36□□□□□ -0.11
CKAP4-202ENST00000552828 SLC9C2Q5TAH2 1124 aa14.36□□□□□ -0.11
CKAP4-202ENST00000552828 SLC17A8Q8NDX2 589 aa14.36□□□□□ -0.11
CKAP4-202ENST00000552828 RHPN1Q8TCX5 695 aa14.36□□□□□ -0.11
CKAP4-202ENST00000552828 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.36□□□□□ -0.11
CKAP4-202ENST00000552828 CHMP4BQ9H444 224 aaKnown RBP14.36□□□□□ -0.11
CKAP4-202ENST00000552828 RPAP3Q9H6T3 665 aaPredicted RBP14.36□□□□□ -0.11
CKAP4-202ENST00000552828 CWC22Q9HCG8 908 aaKnown RBP14.36□□□□□ -0.11
CKAP4-202ENST00000552828 DDX19BQ9UMR2 479 aa14.36□□□□□ -0.11
CKAP4-202ENST00000552828 A0A1W2PRG0 241 aa14.35□□□□□ -0.11
CKAP4-202ENST00000552828 TCRBV5S4A2TA0A5A2 114 aa14.35□□□□□ -0.11
CKAP4-202ENST00000552828 MSCO60682 206 aa14.35□□□□□ -0.11
CKAP4-202ENST00000552828 POLR3DP05423 398 aaPredicted RBP14.35□□□□□ -0.11
CKAP4-202ENST00000552828 COG2Q14746 738 aa14.35□□□□□ -0.11
CKAP4-202ENST00000552828 SEPT2Q15019 361 aa14.35□□□□□ -0.11
CKAP4-202ENST00000552828 CRNKL1Q9BZJ0 848 aaKnown RBP14.35□□□□□ -0.11
CKAP4-202ENST00000552828 UBE2OQ9C0C9 1292 aaKnown RBP14.35□□□□□ -0.11
CKAP4-202ENST00000552828 HOXC10Q9NYD6 342 aa14.35□□□□□ -0.11
CKAP4-202ENST00000552828 DDX20Q9UHI6 824 aaKnown RBP14.35□□□□□ -0.11
CKAP4-202ENST00000552828 COG6Q9Y2V7 657 aa14.35□□□□□ -0.11
CKAP4-202ENST00000552828 IVNS1ABPQ9Y6Y0 642 aa14.35□□□□□ -0.11
CKAP4-202ENST00000552828 CUL9Q8IWT3 2517 aa14.34□□□□□ -0.11
CKAP4-202ENST00000552828 STRNO43815 780 aa14.34□□□□□ -0.11
CKAP4-202ENST00000552828 ATP2B2Q01814 1243 aa14.34□□□□□ -0.11
CKAP4-202ENST00000552828 DEFB123Q8N688 67 aa14.34□□□□□ -0.11
CKAP4-202ENST00000552828 NPLOC4Q8TAT6 608 aa14.34□□□□□ -0.11
CKAP4-202ENST00000552828 LPAR1Q92633 364 aa14.34□□□□□ -0.11
CKAP4-202ENST00000552828 IL1RAPL2Q9NP60 686 aa14.34□□□□□ -0.11
CKAP4-202ENST00000552828 DCP1AQ9NPI6 582 aaPredicted RBP14.34□□□□□ -0.11
CKAP4-202ENST00000552828 MCM9Q9NXL9 1143 aa14.34□□□□□ -0.11
CKAP4-202ENST00000552828 MYH1P12882 1939 aa14.34□□□□□ -0.11
CKAP4-202ENST00000552828 LAMA2P24043 3122 aaKnown RBP14.34□□□□□ -0.11
CKAP4-202ENST00000552828 EVX2Q03828 476 aa14.33□□□□□ -0.12
CKAP4-202ENST00000552828 C20orf194Q5TEA3 1177 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms