RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 NOL10Q9BSC4 688 aaKnown RBP15.69■□□□□ 0.1
SCAF11-208ENST00000546534 GINM1Q9NU53 330 aa15.69■□□□□ 0.1
SCAF11-208ENST00000546534 AATFQ9NY61 560 aaKnown RBP eCLIP15.69■□□□□ 0.1
SCAF11-208ENST00000546534 PRKAG2Q9UGJ0 569 aa15.69■□□□□ 0.1
SCAF11-208ENST00000546534 DDX20Q9UHI6 824 aaKnown RBP15.69■□□□□ 0.1
SCAF11-208ENST00000546534 PALD1Q9ULE6 856 aa15.69■□□□□ 0.1
SCAF11-208ENST00000546534 RABGAP1Q9Y3P9 1069 aa15.69■□□□□ 0.1
SCAF11-208ENST00000546534 BAG3O95817 575 aa15.68■□□□□ 0.1
SCAF11-208ENST00000546534 CNGA1P29973 690 aa15.68■□□□□ 0.1
SCAF11-208ENST00000546534 RTP1P59025 263 aa15.68■□□□□ 0.1
SCAF11-208ENST00000546534 SHHQ15465 462 aa15.68■□□□□ 0.1
SCAF11-208ENST00000546534 USP17L2Q6R6M4 530 aa15.68■□□□□ 0.1
SCAF11-208ENST00000546534 MAFAQ8NHW3 353 aaPredicted RBP15.68■□□□□ 0.1
SCAF11-208ENST00000546534 LPAR1Q92633 364 aa15.68■□□□□ 0.1
SCAF11-208ENST00000546534 TRIM34Q9BYJ4 488 aa15.68■□□□□ 0.1
SCAF11-208ENST00000546534 FLT1P17948 1338 aa15.68■□□□□ 0.1
SCAF11-208ENST00000546534 MAST2Q6P0Q8 1798 aa15.67■□□□□ 0.1
SCAF11-208ENST00000546534 SLC15A5A6NIM6 579 aa15.67■□□□□ 0.1
SCAF11-208ENST00000546534 GLRX3O76003 335 aaKnown RBP15.67■□□□□ 0.1
SCAF11-208ENST00000546534 PLCG2P16885 1265 aa15.67■□□□□ 0.1
SCAF11-208ENST00000546534 PPP4CP60510 307 aa15.67■□□□□ 0.1
SCAF11-208ENST00000546534 MTX1Q13505 466 aa15.67■□□□□ 0.1
SCAF11-208ENST00000546534 ZYXQ15942 572 aaKnown RBP15.67■□□□□ 0.1
SCAF11-208ENST00000546534 C9orf50Q5SZB4 431 aa15.67■□□□□ 0.1
SCAF11-208ENST00000546534 WDR78Q5VTH9 848 aa15.67■□□□□ 0.1
SCAF11-208ENST00000546534 NAA16Q6N069 864 aaPredicted RBP15.67■□□□□ 0.1
SCAF11-208ENST00000546534 ADGRA1Q86SQ6 560 aa15.67■□□□□ 0.1
SCAF11-208ENST00000546534 API5Q9BZZ5 524 aaKnown RBP15.67■□□□□ 0.1
SCAF11-208ENST00000546534 SEMA6BQ9H3T3 888 aa15.67■□□□□ 0.1
SCAF11-208ENST00000546534 SNRKQ9NRH2 765 aa15.67■□□□□ 0.1
SCAF11-208ENST00000546534 SAP30BPQ9UHR5 308 aaKnown RBP15.67■□□□□ 0.1
SCAF11-208ENST00000546534 USP17L15C9J2P7 530 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 USP17L13C9JLJ4 530 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 USP17L11C9JVI0 530 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 USP17L18D6R9N7 530 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 USP17L22D6RA61 530 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 USP17L17D6RBQ6 530 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 USP17L19D6RCP7 530 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 USP17L20D6RJB6 530 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 DNM1LO00429 736 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 MSCO60682 206 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 GH2P01242 217 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 UQCRFS1P1P0C7P4 283 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 PTPREP23469 700 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 CYP2C19P33261 490 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 CCNA1P78396 465 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 ATP2B2Q01814 1243 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 USP17L24Q0WX57 530 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 TRPV1Q8NER1 839 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 NPLOC4Q8TAT6 608 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 CDCA7LQ96GN5 454 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 ATP11BQ9Y2G3 1177 aa15.66■□□□□ 0.1
SCAF11-208ENST00000546534 HOXC6P09630 235 aa15.65■□□□□ 0.1
SCAF11-208ENST00000546534 PYGBP11216 843 aa15.65■□□□□ 0.1
SCAF11-208ENST00000546534 GJC2Q5T442 439 aaPredicted RBP15.65■□□□□ 0.1
SCAF11-208ENST00000546534 MYLIPQ8WY64 445 aa15.65■□□□□ 0.1
SCAF11-208ENST00000546534 C12orf42Q96LP6 360 aa15.65■□□□□ 0.1
SCAF11-208ENST00000546534 PRDM6Q9NQX0 595 aa15.65■□□□□ 0.1
SCAF11-208ENST00000546534 BTBD7Q9P203 1132 aa15.65■□□□□ 0.1
SCAF11-208ENST00000546534 FRMPD3Q5JV73 1810 aa15.65■□□□□ 0.1
SCAF11-208ENST00000546534 IGHA2P01877 340 aa15.64■□□□□ 0.09
SCAF11-208ENST00000546534 HLA-DOAP06340 250 aa15.64■□□□□ 0.09
SCAF11-208ENST00000546534 GNAI3P08754 354 aa15.64■□□□□ 0.09
SCAF11-208ENST00000546534 GRB14Q14449 540 aa15.64■□□□□ 0.09
SCAF11-208ENST00000546534 SLC39A5Q6ZMH5 540 aa15.64■□□□□ 0.09
SCAF11-208ENST00000546534 CATSPERGQ6ZRH7 1159 aa15.64■□□□□ 0.09
SCAF11-208ENST00000546534 FEZ1Q99689 392 aa15.64■□□□□ 0.09
SCAF11-208ENST00000546534 TTYH1Q9H313 450 aaPredicted RBP15.64■□□□□ 0.09
SCAF11-208ENST00000546534 IVNS1ABPQ9Y6Y0 642 aa15.64■□□□□ 0.09
SCAF11-208ENST00000546534 CYBAP13498 195 aa15.63■□□□□ 0.09
SCAF11-208ENST00000546534 DYNLL1P63167 89 aaKnown RBP15.63■□□□□ 0.09
SCAF11-208ENST00000546534 ARRDC4Q8NCT1 418 aa15.63■□□□□ 0.09
SCAF11-208ENST00000546534 BADQ92934 168 aa15.63■□□□□ 0.09
SCAF11-208ENST00000546534 PRDM5Q9NQX1 630 aaPredicted RBP15.63■□□□□ 0.09
SCAF11-208ENST00000546534 VCANP13611 3396 aa15.63■□□□□ 0.09
SCAF11-208ENST00000546534 LTBP2Q14767 1821 aa15.63■□□□□ 0.09
SCAF11-208ENST00000546534 CYP2E1P05181 493 aaPredicted RBP15.62■□□□□ 0.09
SCAF11-208ENST00000546534 VCAM1P19320 739 aa15.62■□□□□ 0.09
SCAF11-208ENST00000546534 SMAD3P84022 425 aaKnown RBP15.62■□□□□ 0.09
SCAF11-208ENST00000546534 G3BP1Q13283 466 aaKnown RBP eCLIP15.62■□□□□ 0.09
SCAF11-208ENST00000546534 ANO1Q5XXA6 986 aa15.62■□□□□ 0.09
SCAF11-208ENST00000546534 ATF7IPQ6VMQ6 1270 aa15.62■□□□□ 0.09
SCAF11-208ENST00000546534 LBX2Q6XYB7 198 aa15.62■□□□□ 0.09
SCAF11-208ENST00000546534 ACER1Q8TDN7 264 aa15.62■□□□□ 0.09
SCAF11-208ENST00000546534 KIAA1683Q9H0B3 1180 aa15.62■□□□□ 0.09
SCAF11-208ENST00000546534 PNMA6EA0A0J9YXQ4 647 aa15.61■□□□□ 0.09
SCAF11-208ENST00000546534 SPDYE16A6NNV3 312 aaPredicted RBP15.61■□□□□ 0.09
SCAF11-208ENST00000546534 KBTBD13C9JR72 458 aa15.61■□□□□ 0.09
SCAF11-208ENST00000546534 USP14P54578 494 aa15.61■□□□□ 0.09
SCAF11-208ENST00000546534 RAB3GAP1Q15042 981 aa15.61■□□□□ 0.09
SCAF11-208ENST00000546534 TRIM60Q495X7 471 aa15.61■□□□□ 0.09
SCAF11-208ENST00000546534 TTC39AQ5SRH9 613 aa15.61■□□□□ 0.09
SCAF11-208ENST00000546534 TATDN1Q6P1N9 297 aa15.61■□□□□ 0.09
SCAF11-208ENST00000546534 SH3RF1Q7Z6J0 888 aa15.61■□□□□ 0.09
SCAF11-208ENST00000546534 TRMT2AQ8IZ69 625 aaKnown RBP15.61■□□□□ 0.09
SCAF11-208ENST00000546534 PDLIM7Q9NR12 457 aa15.61■□□□□ 0.09
SCAF11-208ENST00000546534 TRIM43BA6NCK2 446 aa15.6■□□□□ 0.09
SCAF11-208ENST00000546534 FOSL2P15408 326 aa15.6■□□□□ 0.09
SCAF11-208ENST00000546534 DPP9Q86TI2 863 aa15.6■□□□□ 0.09
SCAF11-208ENST00000546534 TRIM43Q96BQ3 446 aaPredicted RBP15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms