RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 SLF1Q9BQI6 1058 aa17.67■□□□□ 0.42
CUX1-211ENST00000546411 NEDD4P46934 1319 aa17.66■□□□□ 0.42
CUX1-211ENST00000546411 TERF1P54274 439 aa17.66■□□□□ 0.42
CUX1-211ENST00000546411 DIXDC1Q155Q3 683 aa17.66■□□□□ 0.42
CUX1-211ENST00000546411 CCDC122Q5T0U0 273 aa17.66■□□□□ 0.42
CUX1-211ENST00000546411 TXLNBQ8N3L3 684 aa17.66■□□□□ 0.42
CUX1-211ENST00000546411 TBC1D7Q9P0N9 293 aa17.66■□□□□ 0.42
CUX1-211ENST00000546411 GOLGA6L10A6NI86 522 aa17.66■□□□□ 0.42
CUX1-211ENST00000546411 ARHGAP6O43182 974 aa17.66■□□□□ 0.42
CUX1-211ENST00000546411 CASP1P29466 404 aa17.66■□□□□ 0.42
CUX1-211ENST00000546411 CDC27P30260 824 aa17.66■□□□□ 0.42
CUX1-211ENST00000546411 RBM6P78332 1123 aaKnown RBP17.66■□□□□ 0.42
CUX1-211ENST00000546411 DHX37Q8IY37 1157 aaKnown RBP17.66■□□□□ 0.42
CUX1-211ENST00000546411 USP42Q9H9J4 1324 aaKnown RBP17.66■□□□□ 0.42
CUX1-211ENST00000546411 DIP2AQ14689 1571 aa17.66■□□□□ 0.42
CUX1-211ENST00000546411 RFX5P48382 616 aaPredicted RBP17.66■□□□□ 0.42
CUX1-211ENST00000546411 BIN2Q9UBW5 565 aaPredicted RBP17.66■□□□□ 0.42
CUX1-211ENST00000546411 C1orf167Q5SNV9 1468 aa17.65■□□□□ 0.42
CUX1-211ENST00000546411 KIF5AQ12840 1032 aa17.65■□□□□ 0.42
CUX1-211ENST00000546411 SF3B2Q13435 895 aaKnown RBP17.65■□□□□ 0.42
CUX1-211ENST00000546411 FCHSD1Q86WN1 690 aa17.65■□□□□ 0.42
CUX1-211ENST00000546411 PSMB7Q99436 277 aa17.65■□□□□ 0.42
CUX1-211ENST00000546411 AGLP35573 1532 aa17.65■□□□□ 0.42
CUX1-211ENST00000546411 GOLGA1Q92805 767 aa17.65■□□□□ 0.42
CUX1-211ENST00000546411 VEZTQ9HBM0 779 aa17.65■□□□□ 0.42
CUX1-211ENST00000546411 NCOA3Q9Y6Q9 1424 aa17.65■□□□□ 0.42
CUX1-211ENST00000546411 KCNQ2O43526 872 aa17.65■□□□□ 0.42
CUX1-211ENST00000546411 SSR1P43307 286 aaKnown RBP17.65■□□□□ 0.42
CUX1-211ENST00000546411 PPP2R3AQ06190 1150 aa17.65■□□□□ 0.42
CUX1-211ENST00000546411 NELFBQ8WX92 580 aa17.65■□□□□ 0.42
CUX1-211ENST00000546411 EPSTI1Q96J88 318 aa17.65■□□□□ 0.42
CUX1-211ENST00000546411 NOC4LQ9BVI4 516 aaKnown RBP17.65■□□□□ 0.42
CUX1-211ENST00000546411 TRAF5O00463 557 aa17.64■□□□□ 0.42
CUX1-211ENST00000546411 USP17L8P0C7I0 530 aa17.64■□□□□ 0.42
CUX1-211ENST00000546411 CYP19A1P11511 503 aaPredicted RBP17.64■□□□□ 0.42
CUX1-211ENST00000546411 SCG2P13521 617 aa17.64■□□□□ 0.42
CUX1-211ENST00000546411 SYCP3Q8IZU3 236 aa17.64■□□□□ 0.42
CUX1-211ENST00000546411 FERMT2Q96AC1 680 aa17.64■□□□□ 0.42
CUX1-211ENST00000546411 EYA3Q99504 573 aa17.64■□□□□ 0.42
CUX1-211ENST00000546411 IFNAR1P17181 557 aa17.64■□□□□ 0.41
CUX1-211ENST00000546411 UBE4AQ14139 1066 aa17.64■□□□□ 0.41
CUX1-211ENST00000546411 DYNLL2Q96FJ2 89 aa17.64■□□□□ 0.41
CUX1-211ENST00000546411 ALS2CR12Q96Q35 445 aa17.64■□□□□ 0.41
CUX1-211ENST00000546411 TBCAO75347 108 aaKnown RBP17.64■□□□□ 0.41
CUX1-211ENST00000546411 KIF20AO95235 890 aa17.64■□□□□ 0.41
CUX1-211ENST00000546411 SMARCC2Q8TAQ2 1214 aa17.64■□□□□ 0.41
CUX1-211ENST00000546411 USP21Q9UK80 565 aa17.64■□□□□ 0.41
CUX1-211ENST00000546411 ZNF804BA4D1E1 1349 aa17.64■□□□□ 0.41
CUX1-211ENST00000546411 FRMPD2Q68DX3 1309 aaPredicted RBP17.64■□□□□ 0.41
CUX1-211ENST00000546411 SCNN1DP51172 638 aa17.64■□□□□ 0.41
CUX1-211ENST00000546411 PLS1Q14651 629 aa17.64■□□□□ 0.41
CUX1-211ENST00000546411 ZYXQ15942 572 aaKnown RBP17.64■□□□□ 0.41
CUX1-211ENST00000546411 CCDC144BQ3MJ40 725 aa17.64■□□□□ 0.41
CUX1-211ENST00000546411 MAP9Q49MG5 647 aa17.64■□□□□ 0.41
CUX1-211ENST00000546411 SRRTQ9BXP5 876 aaKnown RBP17.64■□□□□ 0.41
CUX1-211ENST00000546411 KLRF2D3W0D1 207 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 MB21D2Q8IYB1 491 aaPredicted RBP17.63■□□□□ 0.41
CUX1-211ENST00000546411 BLIDQ8IZY5 108 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 LRRC47Q8N1G4 583 aaKnown RBP17.63■□□□□ 0.41
CUX1-211ENST00000546411 PKD2L1Q9P0L9 805 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 SMCO2A6NFE2 343 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 KRT86O43790 486 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 PLEKHA8P1O95397 391 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 PRDX5P30044 214 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 CDR1P51861 262 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 NONOQ15233 471 aaKnown RBP eCLIP17.63■□□□□ 0.411e-6■■■□□ 16.7
CUX1-211ENST00000546411 SV2BQ7L1I2 683 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 LRWD1Q9UFC0 647 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 ADGRB2O60241 1585 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 FMNL1O95466 1100 aaPredicted RBP17.63■□□□□ 0.41
CUX1-211ENST00000546411 PPP2R5BQ15173 497 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 VPS36Q86VN1 386 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 TAX1BP1Q86VP1 789 aa17.63■□□□□ 0.41
CUX1-211ENST00000546411 SPDYE3A6NKU9 549 aa17.62■□□□□ 0.41
CUX1-211ENST00000546411 MMP1P03956 469 aa17.62■□□□□ 0.41
CUX1-211ENST00000546411 PLCD1P51178 756 aa17.62■□□□□ 0.41
CUX1-211ENST00000546411 NAA30Q147X3 362 aaPredicted RBP17.62■□□□□ 0.41
CUX1-211ENST00000546411 SAMSN1Q9NSI8 373 aaKnown RBP17.62■□□□□ 0.41
CUX1-211ENST00000546411 KIF28PB7ZC32 967 aa17.62■□□□□ 0.41
CUX1-211ENST00000546411 RBM26Q5T8P6 1007 aaKnown RBP17.62■□□□□ 0.41
CUX1-211ENST00000546411 ERVV-1B6SEH8 477 aa17.62■□□□□ 0.41
CUX1-211ENST00000546411 NMT2O60551 498 aa17.62■□□□□ 0.41
CUX1-211ENST00000546411 CYP2D6P10635 497 aa17.62■□□□□ 0.41
CUX1-211ENST00000546411 TECP42680 631 aa17.62■□□□□ 0.41
CUX1-211ENST00000546411 ETF1P62495 437 aaKnown RBP17.62■□□□□ 0.41
CUX1-211ENST00000546411 ARPP21Q9UBL0 812 aaPredicted RBP17.62■□□□□ 0.41
CUX1-211ENST00000546411 RIPOR2Q9Y4F9 1068 aa17.62■□□□□ 0.41
CUX1-211ENST00000546411 RNASE9P60153 205 aaKnown RBP17.61■□□□□ 0.41
CUX1-211ENST00000546411 CPVLQ9H3G5 476 aa17.61■□□□□ 0.41
CUX1-211ENST00000546411 BCCIPQ9P287 314 aaKnown RBP eCLIP17.61■□□□□ 0.41
CUX1-211ENST00000546411 DOK7Q18PE1 504 aa17.61■□□□□ 0.41
CUX1-211ENST00000546411 OXER1Q8TDS5 423 aa17.61■□□□□ 0.41
CUX1-211ENST00000546411 SNX29Q8TEQ0 813 aa17.61■□□□□ 0.41
CUX1-211ENST00000546411 CELF1Q92879 486 aaKnown RBP17.61■□□□□ 0.41
CUX1-211ENST00000546411 SENP2Q9HC62 589 aa17.61■□□□□ 0.41
CUX1-211ENST00000546411 EXOSC10Q01780 885 aaKnown RBP17.61■□□□□ 0.41
CUX1-211ENST00000546411 TSGA10IPQ3SY00 556 aa17.61■□□□□ 0.41
CUX1-211ENST00000546411 CTR9Q6PD62 1173 aa17.61■□□□□ 0.41
CUX1-211ENST00000546411 NELFCDQ8IXH7 590 aa17.61■□□□□ 0.41
CUX1-211ENST00000546411 BICDL2A1A5D9 508 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms