RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 USP17L11C9JVI0 530 aa27.41■■□□□ 1.98
CHD4-214ENST00000545942 USP17L18D6R9N7 530 aa27.41■■□□□ 1.98
CHD4-214ENST00000545942 USP17L22D6RA61 530 aa27.41■■□□□ 1.98
CHD4-214ENST00000545942 USP17L17D6RBQ6 530 aa27.41■■□□□ 1.98
CHD4-214ENST00000545942 USP17L19D6RCP7 530 aa27.41■■□□□ 1.98
CHD4-214ENST00000545942 USP17L20D6RJB6 530 aa27.41■■□□□ 1.98
CHD4-214ENST00000545942 CYP2D6P10635 497 aa27.41■■□□□ 1.98
CHD4-214ENST00000545942 GUCY1A2P33402 732 aa27.41■■□□□ 1.98
CHD4-214ENST00000545942 USP17L24Q0WX57 530 aa27.41■■□□□ 1.98
CHD4-214ENST00000545942 U2AF1L4Q8WU68 220 aaKnown RBP27.41■■□□□ 1.98
CHD4-214ENST00000545942 GCC1Q96CN9 775 aa27.41■■□□□ 1.98
CHD4-214ENST00000545942 GPATCH3Q96I76 525 aa27.41■■□□□ 1.98
CHD4-214ENST00000545942 MPHOSPH10O00566 681 aaKnown RBP27.4■■□□□ 1.98
CHD4-214ENST00000545942 PEX10O60683 326 aa27.4■■□□□ 1.98
CHD4-214ENST00000545942 CHGBP05060 677 aa27.4■■□□□ 1.98
CHD4-214ENST00000545942 SEPT2Q15019 361 aa27.4■■□□□ 1.98
CHD4-214ENST00000545942 VCAM1P19320 739 aa27.39■■□□□ 1.97
CHD4-214ENST00000545942 MAPK4P31152 587 aa27.39■■□□□ 1.97
CHD4-214ENST00000545942 ERVK-9P63128 1117 aa27.39■■□□□ 1.97
CHD4-214ENST00000545942 ERVK-24P63145 666 aa27.39■■□□□ 1.97
CHD4-214ENST00000545942 AMOTL1Q8IY63 956 aa27.39■■□□□ 1.97
CHD4-214ENST00000545942 DDRGK1Q96HY6 314 aa27.39■■□□□ 1.97
CHD4-214ENST00000545942 PAGR1Q9BTK6 254 aa27.39■■□□□ 1.97
CHD4-214ENST00000545942 SGPL1O95470 568 aa27.38■■□□□ 1.97
CHD4-214ENST00000545942 HMGCRP04035 888 aa27.38■■□□□ 1.97
CHD4-214ENST00000545942 CATSPERGQ6ZRH7 1159 aa27.38■■□□□ 1.97
CHD4-214ENST00000545942 CCAR1Q8IX12 1150 aaKnown RBP27.38■■□□□ 1.97
CHD4-214ENST00000545942 SLC44A5Q8NCS7 719 aa27.38■■□□□ 1.97
CHD4-214ENST00000545942 CAPN2P17655 700 aa27.37■■□□□ 1.97
CHD4-214ENST00000545942 Q3C1V9 767 aa27.37■■□□□ 1.97
CHD4-214ENST00000545942 POTEEQ6S8J3 1075 aa27.37■■□□□ 1.97
CHD4-214ENST00000545942 TMEM179Q6ZVK1 233 aa27.37■■□□□ 1.97
CHD4-214ENST00000545942 UBE2Q1Q7Z7E8 422 aa27.37■■□□□ 1.97
CHD4-214ENST00000545942 SOCS4Q8WXH5 440 aa27.37■■□□□ 1.97
CHD4-214ENST00000545942 DYNLL2Q96FJ2 89 aa27.37■■□□□ 1.97
CHD4-214ENST00000545942 PAK6Q9NQU5 681 aaPredicted RBP27.37■■□□□ 1.97
CHD4-214ENST00000545942 SLC4A4Q9Y6R1 1079 aa27.37■■□□□ 1.97
CHD4-214ENST00000545942 C12orf60Q5U649 245 aa27.36■■□□□ 1.97
CHD4-214ENST00000545942 DEFB118Q96PH6 123 aa27.36■■□□□ 1.97
CHD4-214ENST00000545942 NUDT12Q9BQG2 462 aa27.36■■□□□ 1.97
CHD4-214ENST00000545942 PUS7LQ9H0K6 701 aaKnown RBP27.36■■□□□ 1.97
CHD4-214ENST00000545942 RABGAP1Q9Y3P9 1069 aa27.36■■□□□ 1.97
CHD4-214ENST00000545942 USP17L12C9JPN9 530 aa27.35■■□□□ 1.97
CHD4-214ENST00000545942 USP17L21D6R901 530 aa27.35■■□□□ 1.97
CHD4-214ENST00000545942 KBTBD3Q8NAB2 608 aa27.35■■□□□ 1.97
CHD4-214ENST00000545942 PORCNQ9H237 461 aa27.35■■□□□ 1.97
CHD4-214ENST00000545942 PCDHB15Q9Y5E8 787 aa27.35■■□□□ 1.97
CHD4-214ENST00000545942 DOCK3Q8IZD9 2030 aa27.34■■□□□ 1.97
CHD4-214ENST00000545942 CYP2B6P20813 491 aa27.34■■□□□ 1.97
CHD4-214ENST00000545942 RRP1P56182 461 aaKnown RBP27.34■■□□□ 1.97
CHD4-214ENST00000545942 TSHZ3Q63HK5 1081 aa27.34■■□□□ 1.97
CHD4-214ENST00000545942 LBX2Q6XYB7 198 aa27.34■■□□□ 1.97
CHD4-214ENST00000545942 RPAP3Q9H6T3 665 aaPredicted RBP27.34■■□□□ 1.97
CHD4-214ENST00000545942 CYP2D7A0A087X1C5 515 aa27.33■■□□□ 1.97
CHD4-214ENST00000545942 A0A1W2PRG0 241 aa27.33■■□□□ 1.97
CHD4-214ENST00000545942 FARP2O94887 1054 aaPredicted RBP27.33■■□□□ 1.97
CHD4-214ENST00000545942 TFRCP02786 760 aaKnown RBP27.33■■□□□ 1.97
CHD4-214ENST00000545942 XRCC5P13010 732 aaKnown RBP27.33■■□□□ 1.97
CHD4-214ENST00000545942 CCNA1P78396 465 aa27.33■■□□□ 1.97
CHD4-214ENST00000545942 GPR142Q7Z601 462 aa27.33■■□□□ 1.97
CHD4-214ENST00000545942 CCDC17Q96LX7 622 aa27.33■■□□□ 1.97
CHD4-214ENST00000545942 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.33■■□□□ 1.972e-13■■■■□ 22.5
CHD4-214ENST00000545942 CNMDO75829 334 aa27.32■■□□□ 1.96
CHD4-214ENST00000545942 CDK8P49336 464 aa27.32■■□□□ 1.96
CHD4-214ENST00000545942 C16orf86Q6ZW13 317 aa27.32■■□□□ 1.96
CHD4-214ENST00000545942 PLEKHH3Q7Z736 793 aa27.32■■□□□ 1.96
CHD4-214ENST00000545942 TRIB2Q92519 343 aa27.32■■□□□ 1.96
CHD4-214ENST00000545942 HTATIP2Q9BUP3 242 aa27.32■■□□□ 1.96
CHD4-214ENST00000545942 CWC22Q9HCG8 908 aaKnown RBP27.32■■□□□ 1.96
CHD4-214ENST00000545942 SMIM22K7EJ46 135 aa27.31■■□□□ 1.96
CHD4-214ENST00000545942 AKR1B1P15121 316 aa27.31■■□□□ 1.96
CHD4-214ENST00000545942 CTR9Q6PD62 1173 aa27.31■■□□□ 1.96
CHD4-214ENST00000545942 STRBPQ96SI9 672 aaKnown RBP27.31■■□□□ 1.96
CHD4-214ENST00000545942 HMX1Q9NP08 348 aaPredicted RBP27.31■■□□□ 1.96
CHD4-214ENST00000545942 RPTORQ8N122 1335 aa27.31■■□□□ 1.96
CHD4-214ENST00000545942 SPDYE16A6NNV3 312 aaPredicted RBP27.3■■□□□ 1.96
CHD4-214ENST00000545942 TRIM32Q13049 653 aa27.3■■□□□ 1.96
CHD4-214ENST00000545942 TRMT44Q8IYL2 757 aaKnown RBP27.3■■□□□ 1.96
CHD4-214ENST00000545942 USP6NLQ92738 828 aa27.3■■□□□ 1.96
CHD4-214ENST00000545942 DPF3Q92784 378 aa27.3■■□□□ 1.96
CHD4-214ENST00000545942 CRISPLD2Q9H0B8 497 aa27.3■■□□□ 1.96
CHD4-214ENST00000545942 ARHGEF10LQ9HCE6 1279 aa27.3■■□□□ 1.96
CHD4-214ENST00000545942 ARPP21Q9UBL0 812 aaPredicted RBP27.3■■□□□ 1.96
CHD4-214ENST00000545942 MYH7P12883 1935 aa27.29■■□□□ 1.96
CHD4-214ENST00000545942 ZFYP08048 801 aaPredicted RBP27.29■■□□□ 1.96
CHD4-214ENST00000545942 RGS2P41220 211 aa27.29■■□□□ 1.96
CHD4-214ENST00000545942 ICA1Q05084 483 aa27.29■■□□□ 1.96
CHD4-214ENST00000545942 MORN1Q5T089 497 aa27.29■■□□□ 1.96
CHD4-214ENST00000545942 APPBP2Q92624 585 aa27.29■■□□□ 1.96
CHD4-214ENST00000545942 SH2D4AQ9H788 454 aa27.29■■□□□ 1.96
CHD4-214ENST00000545942 TTC41PQ6P2S7 1318 aa27.29■■□□□ 1.96
CHD4-214ENST00000545942 PLXNB2O15031 1838 aa27.29■■□□□ 1.96
CHD4-214ENST00000545942 RNF113AO15541 343 aaKnown RBP27.28■■□□□ 1.96
CHD4-214ENST00000545942 GLRX3O76003 335 aaKnown RBP27.28■■□□□ 1.96
CHD4-214ENST00000545942 LPAR1Q92633 364 aa27.28■■□□□ 1.96
CHD4-214ENST00000545942 OSBP2Q969R2 916 aa27.28■■□□□ 1.96
CHD4-214ENST00000545942 TANGO6Q9C0B7 1094 aa27.28■■□□□ 1.96
CHD4-214ENST00000545942 HOXC10Q9NYD6 342 aa27.28■■□□□ 1.96
CHD4-214ENST00000545942 BTBD7Q9P203 1132 aa27.28■■□□□ 1.96
CHD4-214ENST00000545942 H0YGN5 161 aa27.27■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms