RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 KIAA1683Q9H0B3 1180 aa14.14□□□□□ -0.15
HDAC4-216ENST00000544989 ASCC2Q9H1I8 757 aaPredicted RBP14.14□□□□□ -0.15
HDAC4-216ENST00000544989 KIAA0100Q14667 2235 aaKnown RBP14.14□□□□□ -0.15
HDAC4-216ENST00000544989 PATL2C9JE40 543 aaKnown RBP14.13□□□□□ -0.15
HDAC4-216ENST00000544989 JAG1P78504 1218 aa14.13□□□□□ -0.15
HDAC4-216ENST00000544989 SLC9C1Q4G0N8 1177 aa14.13□□□□□ -0.15
HDAC4-216ENST00000544989 ZMYM1Q5SVZ6 1142 aa14.13□□□□□ -0.15
HDAC4-216ENST00000544989 ARMC5Q96C12 935 aa14.13□□□□□ -0.15
HDAC4-216ENST00000544989 LNPKQ9C0E8 428 aa14.13□□□□□ -0.15
HDAC4-216ENST00000544989 SRRDQ9UH36 339 aa14.13□□□□□ -0.15
HDAC4-216ENST00000544989 RANBP2P49792 3224 aaKnown RBP14.13□□□□□ -0.15
HDAC4-216ENST00000544989 GSG1L2A8MUP6 293 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 USP17L15C9J2P7 530 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 USP17L13C9JLJ4 530 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 USP17L11C9JVI0 530 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 USP17L18D6R9N7 530 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 USP17L22D6RA61 530 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 USP17L17D6RBQ6 530 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 USP17L19D6RCP7 530 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 USP17L20D6RJB6 530 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 APPP05067 770 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 SLC3A2P08195 630 aaKnown RBP14.12□□□□□ -0.15
HDAC4-216ENST00000544989 CYP2D6P10635 497 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 TDO2P48775 406 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 CDK8P49336 464 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 USP17L24Q0WX57 530 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 TRIM47Q96LD4 638 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 OSBPL3Q9H4L5 887 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 ARHGEF10LQ9HCE6 1279 aa14.12□□□□□ -0.15
HDAC4-216ENST00000544989 IGHDP01880 384 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 CHGBP05060 677 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 SEPT2Q15019 361 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 B4GALNT3Q6L9W6 998 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 ANKRD13CQ8N6S4 541 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 RAET1EQ8TD07 263 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 LPAR1Q92633 364 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 COA7Q96BR5 231 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 DYNLL2Q96FJ2 89 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 ARHGAP39Q9C0H5 1083 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 KANSL2Q9H9L4 492 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 HELLSQ9NRZ9 838 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 EMILIN3Q9NT22 766 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 PTCH2Q9Y6C5 1203 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 MYPNQ86TC9 1320 aa14.11□□□□□ -0.15
HDAC4-216ENST00000544989 ROBO3Q96MS0 1386 aa14.1□□□□□ -0.15
HDAC4-216ENST00000544989 CUL9Q8IWT3 2517 aa14.1□□□□□ -0.15
HDAC4-216ENST00000544989 M0R2C6 588 aa14.1□□□□□ -0.15
HDAC4-216ENST00000544989 TNPO2O14787 897 aaKnown RBP14.1□□□□□ -0.15
HDAC4-216ENST00000544989 MFAP1P55081 439 aaKnown RBP14.1□□□□□ -0.15
HDAC4-216ENST00000544989 HERVK_113P62684 666 aa14.1□□□□□ -0.15
HDAC4-216ENST00000544989 ICA1Q05084 483 aa14.1□□□□□ -0.15
HDAC4-216ENST00000544989 SHROOM1Q2M3G4 852 aaPredicted RBP14.1□□□□□ -0.15
HDAC4-216ENST00000544989 TMEM106CQ9BVX2 250 aa14.1□□□□□ -0.15
HDAC4-216ENST00000544989 NAPBQ9H115 298 aa14.1□□□□□ -0.15
HDAC4-216ENST00000544989 MKNK2Q9HBH9 465 aa14.1□□□□□ -0.15
HDAC4-216ENST00000544989 MORF4L1Q9UBU8 362 aa14.1□□□□□ -0.15
HDAC4-216ENST00000544989 BAZ2AQ9UIF9 1905 aaKnown RBP14.09□□□□□ -0.15
HDAC4-216ENST00000544989 RBBP6Q7Z6E9 1792 aaKnown RBP14.09□□□□□ -0.15
HDAC4-216ENST00000544989 TRIM6-TRIM34B2RNG4 842 aa14.09□□□□□ -0.15
HDAC4-216ENST00000544989 HIP1O00291 1037 aa14.09□□□□□ -0.15
HDAC4-216ENST00000544989 VCAM1P19320 739 aa14.09□□□□□ -0.15
HDAC4-216ENST00000544989 GUCY1A2P33402 732 aa14.09□□□□□ -0.15
HDAC4-216ENST00000544989 PDE4BQ07343 736 aa14.09□□□□□ -0.15
HDAC4-216ENST00000544989 PPP4R3BQ5MIZ7 849 aa14.09□□□□□ -0.15
HDAC4-216ENST00000544989 IFNL3Q8IZI9 196 aa14.09□□□□□ -0.15
HDAC4-216ENST00000544989 SLC44A5Q8NCS7 719 aa14.09□□□□□ -0.15
HDAC4-216ENST00000544989 SLAIN1Q8ND83 568 aa14.09□□□□□ -0.15
HDAC4-216ENST00000544989 GPRC5AQ8NFJ5 357 aa14.09□□□□□ -0.15
HDAC4-216ENST00000544989 ZNF333Q96JL9 665 aa14.09□□□□□ -0.15
HDAC4-216ENST00000544989 P2RX7Q99572 595 aaKnown RBP14.09□□□□□ -0.15
HDAC4-216ENST00000544989 MYH8P13535 1937 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 CYP2D7A0A087X1C5 515 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 MINDY4BA8MYZ0 360 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 AKR1B1P15121 316 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 MAPK4P31152 587 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 CCNA1P78396 465 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 CAP1Q01518 475 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 IRF5Q13568 498 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 ZYXQ15942 572 aaKnown RBP14.08□□□□□ -0.16
HDAC4-216ENST00000544989 HABP4Q5JVS0 413 aaKnown RBP14.08□□□□□ -0.16
HDAC4-216ENST00000544989 LBX2Q6XYB7 198 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 CATSPERGQ6ZRH7 1159 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 PLEKHM2Q8IWE5 1019 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 CCAR1Q8IX12 1150 aaKnown RBP14.08□□□□□ -0.16
HDAC4-216ENST00000544989 ACER1Q8TDN7 264 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 GOPCQ9HD26 462 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 HOXC10Q9NYD6 342 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 RABGAP1Q9Y3P9 1069 aa14.08□□□□□ -0.16
HDAC4-216ENST00000544989 CAPN2P17655 700 aa14.07□□□□□ -0.16
HDAC4-216ENST00000544989 CTGFP29279 349 aa14.07□□□□□ -0.16
HDAC4-216ENST00000544989 GRK4P32298 578 aa14.07□□□□□ -0.16
HDAC4-216ENST00000544989 UBXN2AP68543 259 aa14.07□□□□□ -0.16
HDAC4-216ENST00000544989 MCMDC2Q4G0Z9 681 aa14.07□□□□□ -0.16
HDAC4-216ENST00000544989 ZNF444Q8N0Y2 327 aaPredicted RBP14.07□□□□□ -0.16
HDAC4-216ENST00000544989 PXYLP1Q8TE99 480 aa14.07□□□□□ -0.16
HDAC4-216ENST00000544989 RILPL2Q969X0 211 aa14.07□□□□□ -0.16
HDAC4-216ENST00000544989 EPB41L4AQ9HCS5 686 aaPredicted RBP14.07□□□□□ -0.16
HDAC4-216ENST00000544989 SYNPO2Q9UMS6 1093 aa14.07□□□□□ -0.16
HDAC4-216ENST00000544989 TMX2Q9Y320 296 aa14.07□□□□□ -0.16
HDAC4-216ENST00000544989 ERVK-9P63128 1117 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms