RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 FAM107BQ9H098 131 aa11.33□□□□□ -0.6
TRAF1-202ENST00000540010 MCM9Q9NXL9 1143 aa11.33□□□□□ -0.6
TRAF1-202ENST00000540010 OGFRQ9NZT2 677 aa11.33□□□□□ -0.6
TRAF1-202ENST00000540010 BTAF1O14981 1849 aa11.33□□□□□ -0.6
TRAF1-202ENST00000540010 LDHCP07864 332 aa11.33□□□□□ -0.6
TRAF1-202ENST00000540010 GSTO1P78417 241 aa11.33□□□□□ -0.6
TRAF1-202ENST00000540010 RRAGBQ5VZM2 374 aa11.33□□□□□ -0.6
TRAF1-202ENST00000540010 SMAP1Q8IYB5 467 aaPredicted RBP11.33□□□□□ -0.6
TRAF1-202ENST00000540010 FEZ1Q99689 392 aa11.33□□□□□ -0.6
TRAF1-202ENST00000540010 PLCD4Q9BRC7 762 aa11.33□□□□□ -0.6
TRAF1-202ENST00000540010 SPECC1Q5M775 1068 aa11.33□□□□□ -0.6
TRAF1-202ENST00000540010 CTR9Q6PD62 1173 aa11.33□□□□□ -0.6
TRAF1-202ENST00000540010 MYO6Q9UM54 1294 aa11.33□□□□□ -0.6
TRAF1-202ENST00000540010 RIMBP2O15034 1052 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 ERLIN2O94905 339 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 RHOXF2BP0C7M4 288 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 TRIM21P19474 475 aaKnown RBP11.32□□□□□ -0.6
TRAF1-202ENST00000540010 IFIT1BQ5T764 474 aaKnown RBP11.32□□□□□ -0.6
TRAF1-202ENST00000540010 STAG1Q8WVM7 1258 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 RHOXF2Q9BQY4 288 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 CLSTN2Q9H4D0 955 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 NR1I2O75469 434 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 TERF1P54274 439 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 PDE4BQ07343 736 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 HLTFQ14527 1009 aaKnown RBP eCLIP11.32□□□□□ -0.6
TRAF1-202ENST00000540010 NSUN4Q96CB9 384 aaKnown RBP11.32□□□□□ -0.6
TRAF1-202ENST00000540010 SENP2Q9HC62 589 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 BCCIPQ9P287 314 aaKnown RBP eCLIP11.32□□□□□ -0.6
TRAF1-202ENST00000540010 RSPH14Q9UHP6 348 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 PARP3Q9Y6F1 533 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 SHTN1A0MZ66 631 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 TSPY2A6NKD2 308 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 MYO1BO43795 1136 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 ATP2B4P23634 1241 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 MSL1Q68DK7 614 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 BBXQ8WY36 941 aaPredicted RBP11.32□□□□□ -0.6
TRAF1-202ENST00000540010 LY9Q9HBG7 655 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 HPS5Q9UPZ3 1129 aa11.32□□□□□ -0.6
TRAF1-202ENST00000540010 GPSM2P81274 684 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 NLGN1Q8N2Q7 840 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 FBXO18Q8NFZ0 1043 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 ZNF622Q969S3 477 aaKnown RBP eCLIP11.31□□□□□ -0.6
TRAF1-202ENST00000540010 FTOQ9C0B1 505 aaKnown RBP eCLIP11.31□□□□□ -0.6
TRAF1-202ENST00000540010 GJB4Q9NTQ9 266 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 ELP1O95163 1332 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 AKR1B10O60218 316 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 BBOX1O75936 387 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 CAPN2P17655 700 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 TM4SF1P30408 202 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 TRIM47Q96LD4 638 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 USP28Q96RU2 1077 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.31□□□□□ -0.6
TRAF1-202ENST00000540010 STX8Q9UNK0 236 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 CTAGE15A4D2H0 777 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 USO1O60763 962 aaKnown RBP11.31□□□□□ -0.6
TRAF1-202ENST00000540010 CTAGE8P0CG41 777 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 LIFRP42702 1097 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 EVCP57679 992 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 CTAGE6Q86UF2 777 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 CTAGE4Q8IX94 777 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 FBXL16Q8N461 479 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 IGDCC4Q8TDY8 1250 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 UBA5Q9GZZ9 404 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 CCDC113Q9H0I3 377 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 PYCARDQ9ULZ3 195 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 TNKSO95271 1327 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 A0A087WWV3 80 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 CCDC175P0C221 793 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 RXRBP28702 533 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 KANK3Q6NY19 840 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 ZSCAN29Q8IWY8 852 aaPredicted RBP11.31□□□□□ -0.6
TRAF1-202ENST00000540010 AIFM3Q96NN9 605 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 CARD6Q9BX69 1037 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 ZNF219Q9P2Y4 722 aaPredicted RBP11.31□□□□□ -0.6
TRAF1-202ENST00000540010 NRBP1Q9UHY1 535 aa11.31□□□□□ -0.6
TRAF1-202ENST00000540010 FDPSP14324 419 aaKnown RBP11.3□□□□□ -0.6
TRAF1-202ENST00000540010 DIXDC1Q155Q3 683 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 ZNF569Q5MCW4 686 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 RNF187Q5TA31 235 aaPredicted RBP11.3□□□□□ -0.6
TRAF1-202ENST00000540010 ZNF654Q8IZM8 581 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 CMTR1Q8N1G2 835 aaKnown RBP11.3□□□□□ -0.6
TRAF1-202ENST00000540010 IPO4Q8TEX9 1081 aaKnown RBP11.3□□□□□ -0.6
TRAF1-202ENST00000540010 RIOK1Q9BRS2 568 aaKnown RBP11.3□□□□□ -0.6
TRAF1-202ENST00000540010 BRIP1Q9BX63 1249 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 NEFHP12036 1026 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 TRMT1LQ7Z2T5 733 aaKnown RBP11.3□□□□□ -0.6
TRAF1-202ENST00000540010 ZNF444Q8N0Y2 327 aaPredicted RBP11.3□□□□□ -0.6
TRAF1-202ENST00000540010 ERO1AQ96HE7 468 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 ZC3H12CQ9C0D7 883 aaKnown RBP11.3□□□□□ -0.6
TRAF1-202ENST00000540010 GUCA1BQ9UMX6 200 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 F8W031 263 aaPredicted RBP11.3□□□□□ -0.6
TRAF1-202ENST00000540010 CDC27P30260 824 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 MYL5Q02045 173 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 KRT40Q6A162 431 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 ATL3Q6DD88 541 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 BRAPQ7Z569 592 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 ATP8A2Q9NTI2 1148 aa11.3□□□□□ -0.6
TRAF1-202ENST00000540010 FAM47AQ5JRC9 791 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 CAPZA3Q96KX2 299 aa11.29□□□□□ -0.6
TRAF1-202ENST00000540010 PRM3Q9NNZ6 103 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms