RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 CRACR2BQ8N4Y2 399 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-210ENST00000538120 SH3RF3Q8TEJ3 882 aaPredicted RBP12.43□□□□□ -0.42
CLIP1-210ENST00000538120 PCDHA7Q9UN72 937 aa12.43□□□□□ -0.42
CLIP1-210ENST00000538120 GTF2F1P35269 517 aaKnown RBP eCLIP12.42□□□□□ -0.42
CLIP1-210ENST00000538120 PPP4CP60510 307 aa12.42□□□□□ -0.42
CLIP1-210ENST00000538120 SNW1Q13573 536 aaKnown RBP12.42□□□□□ -0.42
CLIP1-210ENST00000538120 MICALL2Q8IY33 904 aa12.42□□□□□ -0.42
CLIP1-210ENST00000538120 CMTR1Q8N1G2 835 aaKnown RBP12.42□□□□□ -0.42
CLIP1-210ENST00000538120 NLGN1Q8N2Q7 840 aa12.42□□□□□ -0.42
CLIP1-210ENST00000538120 ENGASEQ8NFI3 743 aa12.42□□□□□ -0.42
CLIP1-210ENST00000538120 POLR3EQ9NVU0 708 aa12.42□□□□□ -0.42
CLIP1-210ENST00000538120 ARPP21Q9UBL0 812 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-210ENST00000538120 KIAA1551Q9HCM1 1747 aa12.42□□□□□ -0.42
CLIP1-210ENST00000538120 USP17L8P0C7I0 530 aa12.42□□□□□ -0.42
CLIP1-210ENST00000538120 HMGB2P26583 209 aaKnown RBP12.42□□□□□ -0.42
CLIP1-210ENST00000538120 SP8Q8IXZ3 490 aa12.42□□□□□ -0.42
CLIP1-210ENST00000538120 KIAA1524Q8TCG1 905 aa12.42□□□□□ -0.42
CLIP1-210ENST00000538120 NUP133Q8WUM0 1156 aa12.42□□□□□ -0.42
CLIP1-210ENST00000538120 TNMDQ9H2S6 317 aa12.42□□□□□ -0.42
CLIP1-210ENST00000538120 ECM29Q5VYK3 1845 aa12.41□□□□□ -0.42
CLIP1-210ENST00000538120 LTBP1Q14766 1721 aa12.41□□□□□ -0.42
CLIP1-210ENST00000538120 PPEF1O14829 653 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-210ENST00000538120 U2AF2P26368 475 aaKnown RBP eCLIP12.41□□□□□ -0.422e-6■■■■□ 26.3
CLIP1-210ENST00000538120 CKAP2LQ8IYA6 745 aa12.41□□□□□ -0.42
CLIP1-210ENST00000538120 RTFDC1Q9BY42 306 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-210ENST00000538120 CCDC88AQ3V6T2 1871 aa12.41□□□□□ -0.42
CLIP1-210ENST00000538120 ANKRD31Q8N7Z5 1873 aa12.41□□□□□ -0.42
CLIP1-210ENST00000538120 LRRC37AA6NMS7 1700 aa12.41□□□□□ -0.42
CLIP1-210ENST00000538120 NRXN2Q9P2S2 1712 aa12.41□□□□□ -0.42
CLIP1-210ENST00000538120 YEATS4O95619 227 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 SRGNP10124 158 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 ME1P48163 572 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 GSTO1P78417 241 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 CBX1P83916 185 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 FUT2Q10981 343 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 FAM47AQ5JRC9 791 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 C12orf60Q5U649 245 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 SMAP1Q8IYB5 467 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-210ENST00000538120 ZNF526Q8TF50 670 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-210ENST00000538120 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.4□□□□□ -0.42
CLIP1-210ENST00000538120 TMEM121BQ9BXQ6 578 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-210ENST00000538120 MCM9Q9NXL9 1143 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 BOLA1Q9Y3E2 137 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 MRVI1Q9Y6F6 885 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 MROH7-TTC4A0A0A0MT08 1334 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 NMT2O60551 498 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 CCDC192P0DO97 292 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 TYRO3Q06418 890 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 TROAPQ12815 778 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 IFIT1BQ5T764 474 aaKnown RBP12.4□□□□□ -0.42
CLIP1-210ENST00000538120 ANO1Q5XXA6 986 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 TMC4Q7Z404 712 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 LUZP1Q86V48 1076 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 CCDC82Q8N4S0 544 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 IPO4Q8TEX9 1081 aaKnown RBP12.4□□□□□ -0.42
CLIP1-210ENST00000538120 SHISA4Q96DD7 197 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 ATP6V0A2Q9Y487 856 aa12.4□□□□□ -0.42
CLIP1-210ENST00000538120 CCDC196A0A1B0GTZ2 297 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 A0A1W2PQ27 194 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 A0A1W2PQ64 194 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 A0A1W2PQD8 194 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 POTEJP0CG39 1038 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 STK38Q15208 465 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 ADALQ6DHV7 355 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 OLFM4Q6UX06 510 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 IQCA1Q86XH1 822 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 TEX2Q8IWB9 1127 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 C6orf229H3BNL8 230 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 SPTLC2O15270 562 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 PTGS1P23219 599 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 PPP2R5BQ15173 497 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 SLC4A8Q2Y0W8 1093 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 PPP4R3BQ5MIZ7 849 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 FSIP1Q8NA03 581 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 KCNG4Q8TDN1 519 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 WASF1Q92558 559 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 LAMB1P07942 1786 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 MYH2Q9UKX2 1941 aa12.39□□□□□ -0.43
CLIP1-210ENST00000538120 GPR75-ASB3A0A0A6YYF3 556 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 DEXIO95424 95 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 BAG3O95817 575 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 MMP1P03956 469 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 LDHCP07864 332 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 MMP10P09238 476 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 RXRBP28702 533 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 USP5P45974 858 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 FAM160A1Q05DH4 1040 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 TRIM29Q14134 588 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 SLC39A14Q15043 492 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 PTPAQ15257 358 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 AXDND1Q5T1B0 1012 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-210ENST00000538120 CATIPQ7Z7H3 387 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 TRIM22Q8IYM9 498 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 FMR1NBQ8N0W7 255 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-210ENST00000538120 DYNLL2Q96FJ2 89 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 MAP3K14Q99558 947 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 ZHX1Q9UKY1 873 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-210ENST00000538120 KCNJ14Q9UNX9 436 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 FAM205AQ6ZU69 1335 aa12.38□□□□□ -0.43
CLIP1-210ENST00000538120 DLEC1Q9Y238 1755 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms