RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 ARHGAP6O43182 974 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 MGEA5O60502 916 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 RXRAP19793 462 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 C16orf71Q8IYS4 520 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-209ENST00000537178 DENND2AQ9ULE3 1009 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 NOD1Q9Y239 953 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 KRT15P19012 456 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 RASSF2P50749 326 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 PAK1Q13153 545 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 GRM1Q13255 1194 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 MAP3K21Q5TCX8 1036 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 CCDC84Q86UT8 332 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-209ENST00000537178 C8orf58Q8NAV2 365 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 GSDMBQ8TAX9 411 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 ZBTB9Q96C00 473 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 LLPHQ9BRT6 129 aaKnown RBP11.81□□□□□ -0.52
CLIP1-209ENST00000537178 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.81□□□□□ -0.52
CLIP1-209ENST00000537178 N4BP2Q86UW6 1770 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-209ENST00000537178 PPFIA4O75335 1185 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 SETSIPP0DME0 302 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 HELBQ8NG08 1087 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-209ENST00000537178 ATP2A3Q93084 1043 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 CARD6Q9BX69 1037 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 TRIM31Q9BZY9 425 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 PLCB1Q9NQ66 1216 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 CUTAO60888 179 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 MBD4O95243 580 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 FANCCQ00597 558 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 CEP85Q6P2H3 762 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 SIRT1Q96EB6 747 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 IMPACTQ9P2X3 320 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 LRRC7Q96NW7 1537 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 TMEM131LA2VDJ0 1609 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 SYNRGQ9UMZ2 1314 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 TEX11Q8IYF3 940 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 WDR46O15213 610 aaKnown RBP11.8□□□□□ -0.52
CLIP1-209ENST00000537178 RNF40O75150 1001 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 SLC12A2P55011 1212 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 RNASE9P60153 205 aaKnown RBP11.8□□□□□ -0.52
CLIP1-209ENST00000537178 GABPB1Q06547 395 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-209ENST00000537178 TFCP2Q12800 502 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 CFAP221Q4G0U5 840 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 CDAN1Q8IWY9 1227 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 NUCKS1Q9H1E3 243 aaKnown RBP11.8□□□□□ -0.52
CLIP1-209ENST00000537178 RBM26Q5T8P6 1007 aaKnown RBP11.8□□□□□ -0.52
CLIP1-209ENST00000537178 FCHSD1Q86WN1 690 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 CCDC170Q8IYT3 715 aa11.8□□□□□ -0.52
CLIP1-209ENST00000537178 RTCBQ9Y3I0 505 aaKnown RBP11.8□□□□□ -0.52
CLIP1-209ENST00000537178 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-209ENST00000537178 TXNDC9O14530 226 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 STMN1P16949 149 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 IRX4P78413 519 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 RPS6KA1Q15418 735 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 DDB1Q16531 1140 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 IQCDQ96DY2 449 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 PPANQ9NQ55 473 aaKnown RBP11.79□□□□□ -0.52
CLIP1-209ENST00000537178 PKD2L1Q9P0L9 805 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 BCRP11274 1271 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 PPP2R5DQ14738 602 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 CCDC105Q8IYK2 499 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 NCAPGQ9BPX3 1015 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 RABGAP1Q9Y3P9 1069 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 ERCC3P19447 782 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 PPP2R5BQ15173 497 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 P3H4Q92791 437 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 ARHGEF10LQ9HCE6 1279 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 PARP2Q9UGN5 583 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 RIMBP3CA6NJZ7 1639 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 RIMBP3BA6NNM3 1639 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 RIMBP3Q9UFD9 1639 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 HERC4Q5GLZ8 1057 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-209ENST00000537178 RPGRIP1Q96KN7 1286 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 CLSTN2Q9H4D0 955 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 ZBTB40Q9NUA8 1239 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 KCNG1Q9UIX4 513 aa11.79□□□□□ -0.52
CLIP1-209ENST00000537178 CD2BP2O95400 341 aaKnown RBP11.78□□□□□ -0.52
CLIP1-209ENST00000537178 CD19P15391 556 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 SH3BGRP55822 239 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-209ENST00000537178 GABPAQ06546 454 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 KLHL30Q0D2K2 578 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 FBXO31Q5XUX0 539 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-209ENST00000537178 CERS3Q8IU89 383 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 RNF10Q8N5U6 811 aaKnown RBP11.78□□□□□ -0.52
CLIP1-209ENST00000537178 GPHNQ9NQX3 736 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-209ENST00000537178 PARP3Q9Y6F1 533 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 MAP2P11137 1827 aaKnown RBP11.78□□□□□ -0.52
CLIP1-209ENST00000537178 KRT71Q3SY84 523 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 PHLDB3Q6NSJ2 640 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 CASC4Q6P4E1 433 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 PIK3AP1Q6ZUJ8 805 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 DIS3L2Q8IYB7 885 aaKnown RBP11.78□□□□□ -0.52
CLIP1-209ENST00000537178 PROCA1Q8NCQ7 364 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-209ENST00000537178 CFAP65Q6ZU64 1925 aaKnown RBP11.78□□□□□ -0.52
CLIP1-209ENST00000537178 CHMP2AO43633 222 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 BIRC2Q13490 618 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 KRT25Q7Z3Z0 450 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 PEX26Q7Z412 305 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 PLEKHM2Q8IWE5 1019 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 ACSBG1Q96GR2 724 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 TRIM6Q9C030 488 aaPredicted RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms