RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 CAVIN4Q5BKX8 364 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 ADGRA1Q86SQ6 560 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 SLC51AQ86UW1 340 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 C8orf76Q96K31 380 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 USP28Q96RU2 1077 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 RABEP2Q9H5N1 569 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 FAM204AQ9H8W3 233 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 ANGEL1Q9UNK9 670 aaKnown RBP15.87■□□□□ 0.13
LIG1-203ENST00000536218 SMIM22K7EJ46 135 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 MAP2K7O14733 419 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 RPS8P62241 208 aaKnown RBP15.87■□□□□ 0.13
LIG1-203ENST00000536218 TMEM67Q5HYA8 995 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 DHX58Q96C10 678 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 GOLPH3LQ9H4A5 285 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 CFAP45Q9UL16 551 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 HNRNPH1P31943 449 aaKnown RBP15.87■□□□□ 0.13
LIG1-203ENST00000536218 SF3B3Q15393 1217 aaKnown RBP15.87■□□□□ 0.13
LIG1-203ENST00000536218 NAA16Q6N069 864 aaPredicted RBP15.87■□□□□ 0.13
LIG1-203ENST00000536218 CCDC82Q8N4S0 544 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 GIMAP7Q8NHV1 300 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 PHKBQ93100 1093 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 JPH2Q9BR39 696 aaPredicted RBP15.87■□□□□ 0.13
LIG1-203ENST00000536218 GNL3LQ9NVN8 582 aaKnown RBP15.87■□□□□ 0.13
LIG1-203ENST00000536218 BSDC1Q9NW68 430 aaPredicted RBP15.87■□□□□ 0.13
LIG1-203ENST00000536218 ZSWIM5Q9P217 1185 aa15.87■□□□□ 0.13
LIG1-203ENST00000536218 COL4A1P02462 1669 aa15.86■□□□□ 0.13
LIG1-203ENST00000536218 TAF1P21675 1872 aa15.86■□□□□ 0.13
LIG1-203ENST00000536218 IFIT3O14879 490 aaKnown RBP15.86■□□□□ 0.13
LIG1-203ENST00000536218 PPFIA4O75335 1185 aa15.86■□□□□ 0.13
LIG1-203ENST00000536218 RPS6KA5O75582 802 aa15.86■□□□□ 0.13
LIG1-203ENST00000536218 METAP2P50579 478 aaKnown RBP eCLIP15.86■□□□□ 0.13
LIG1-203ENST00000536218 RSRC2Q7L4I2 434 aaKnown RBP15.86■□□□□ 0.13
LIG1-203ENST00000536218 TACC3Q9Y6A5 838 aa15.86■□□□□ 0.13
LIG1-203ENST00000536218 CNTNAP4Q9C0A0 1308 aa15.86■□□□□ 0.13
LIG1-203ENST00000536218 RFC4P35249 363 aa15.86■□□□□ 0.13
LIG1-203ENST00000536218 BRD3Q15059 726 aa15.86■□□□□ 0.13
LIG1-203ENST00000536218 TPTE2Q6XPS3 522 aa15.86■□□□□ 0.13
LIG1-203ENST00000536218 ZSCAN12O43309 604 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 MAP3K9P80192 1104 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 MFSD6Q6ZSS7 791 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 FAM84BQ96KN1 310 aaPredicted RBP15.85■□□□□ 0.13
LIG1-203ENST00000536218 NACAP1Q9BZK3 213 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 NWD2Q9ULI1 1742 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 SALL1Q9NSC2 1324 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 CPP00450 1065 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 RHOXF2BP0C7M4 288 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 ME1P48163 572 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 KARSQ15046 597 aaKnown RBP15.85■□□□□ 0.13
LIG1-203ENST00000536218 DPCR1Q3MIW9 517 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 FAM196AQ6ZSG2 479 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 FSIP1Q8NA03 581 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 CCDC12Q8WUD4 166 aaPredicted RBP15.85■□□□□ 0.13
LIG1-203ENST00000536218 RHOXF2Q9BQY4 288 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 ABCB6Q9NP58 842 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 MRFAP1Q9Y605 127 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 DYNLL1P63167 89 aaKnown RBP15.85■□□□□ 0.13
LIG1-203ENST00000536218 GBP6Q6ZN66 633 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 GJD4Q96KN9 370 aaPredicted RBP15.85■□□□□ 0.13
LIG1-203ENST00000536218 EP400Q96L91 3159 aa15.85■□□□□ 0.13
LIG1-203ENST00000536218 VWA3AA6NCI4 1184 aa15.84■□□□□ 0.13
LIG1-203ENST00000536218 UBE2Q2LH0YL09 131 aa15.84■□□□□ 0.13
LIG1-203ENST00000536218 SH2B2O14492 632 aaPredicted RBP15.84■□□□□ 0.13
LIG1-203ENST00000536218 CDC27P30260 824 aa15.84■□□□□ 0.13
LIG1-203ENST00000536218 CHMP4BP1P59074 171 aa15.84■□□□□ 0.13
LIG1-203ENST00000536218 SETQ01105 290 aaPredicted RBP15.84■□□□□ 0.13
LIG1-203ENST00000536218 UBE4AQ14139 1066 aa15.84■□□□□ 0.13
LIG1-203ENST00000536218 BEND6Q5SZJ8 279 aaPredicted RBP15.84■□□□□ 0.13
LIG1-203ENST00000536218 PDILTQ8N807 584 aa15.84■□□□□ 0.13
LIG1-203ENST00000536218 PPP2R2CQ9Y2T4 447 aa15.84■□□□□ 0.13
LIG1-203ENST00000536218 ERLIN1O75477 346 aa15.84■□□□□ 0.13
LIG1-203ENST00000536218 USP8P40818 1118 aa15.84■□□□□ 0.13
LIG1-203ENST00000536218 APOA5Q6Q788 366 aa15.84■□□□□ 0.13
LIG1-203ENST00000536218 NYXQ9GZU5 481 aa15.84■□□□□ 0.13
LIG1-203ENST00000536218 CYP2D7A0A087X1C5 515 aa15.83■□□□□ 0.13
LIG1-203ENST00000536218 AKNAD1Q5T1N1 836 aa15.83■□□□□ 0.13
LIG1-203ENST00000536218 TMED8Q6PL24 325 aaPredicted RBP15.83■□□□□ 0.13
LIG1-203ENST00000536218 ILDR1Q86SU0 546 aaPredicted RBP15.83■□□□□ 0.13
LIG1-203ENST00000536218 RTL9Q8NET4 1388 aa15.83■□□□□ 0.13
LIG1-203ENST00000536218 MAGEB6P1A0A0J9YX57 407 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 CCDC189A1A4V9 331 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 ZBTB43O43298 467 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 WDHD1O75717 1129 aaPredicted RBP15.83■□□□□ 0.12
LIG1-203ENST00000536218 KCNJ6P48051 423 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 SLC4A8Q2Y0W8 1093 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 TRAPPC3LQ5T215 181 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 CMTR1Q8N1G2 835 aaKnown RBP15.83■□□□□ 0.12
LIG1-203ENST00000536218 RNF217Q8TC41 542 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 IGDCC4Q8TDY8 1250 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 GOLGA8AA7E2F4 631 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 ECM2O94769 699 aaPredicted RBP15.83■□□□□ 0.12
LIG1-203ENST00000536218 SERPINC1P01008 464 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 ATP1A3P13637 1013 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 CCT5P48643 541 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 CFAP100Q494V2 611 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 FBXL16Q8N461 479 aa15.83■□□□□ 0.12
LIG1-203ENST00000536218 ZNF396Q96N95 335 aaPredicted RBP15.83■□□□□ 0.12
LIG1-203ENST00000536218 AFF2P51816 1311 aa15.82■□□□□ 0.12
LIG1-203ENST00000536218 SF3A1Q15459 793 aaKnown RBP15.82■□□□□ 0.12
LIG1-203ENST00000536218 RC3H1Q5TC82 1133 aaKnown RBP15.82■□□□□ 0.12
LIG1-203ENST00000536218 TXNRD3Q86VQ6 643 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms