RNA–Protein interactions for RNA: ENST00000535685.1

CCDC60-202, Transcript of coiled-coil domain containing 60, humanhuman

TSL 3

Gene CCDC60, Length 446 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-202ENST00000535685 ZNF532Q9HCE3 1301 aa13.07□□□□□ -0.32
CCDC60-202ENST00000535685 TTLL13PA6NNM8 815 aa13.06□□□□□ -0.32
CCDC60-202ENST00000535685 USP17L10C9JJH3 530 aa13.06□□□□□ -0.32
CCDC60-202ENST00000535685 PDE4AP27815 886 aa13.06□□□□□ -0.32
CCDC60-202ENST00000535685 ADD2P35612 726 aa13.06□□□□□ -0.32
CCDC60-202ENST00000535685 IRF5Q13568 498 aa13.06□□□□□ -0.32
CCDC60-202ENST00000535685 UBE3CQ15386 1083 aa13.06□□□□□ -0.32
CCDC60-202ENST00000535685 C12orf42Q96LP6 360 aa13.06□□□□□ -0.32
CCDC60-202ENST00000535685 DNAJC2Q99543 621 aaKnown RBP13.06□□□□□ -0.32
CCDC60-202ENST00000535685 ASCC2Q9H1I8 757 aaPredicted RBP13.06□□□□□ -0.32
CCDC60-202ENST00000535685 BOLA2Q9H3K6 86 aa13.06□□□□□ -0.32
CCDC60-202ENST00000535685 MORF4L1Q9UBU8 362 aa13.06□□□□□ -0.32
CCDC60-202ENST00000535685 MYPNQ86TC9 1320 aa13.06□□□□□ -0.32
CCDC60-202ENST00000535685 CAPN2P17655 700 aa13.05□□□□□ -0.32
CCDC60-202ENST00000535685 GRK4P32298 578 aa13.05□□□□□ -0.32
CCDC60-202ENST00000535685 MTMR2Q13614 643 aa13.05□□□□□ -0.32
CCDC60-202ENST00000535685 PRPF38BQ5VTL8 546 aaKnown RBP13.05□□□□□ -0.32
CCDC60-202ENST00000535685 SLAIN1Q8ND83 568 aa13.05□□□□□ -0.32
CCDC60-202ENST00000535685 RAET1EQ8TD07 263 aa13.05□□□□□ -0.32
CCDC60-202ENST00000535685 PXYLP1Q8TE99 480 aa13.05□□□□□ -0.32
CCDC60-202ENST00000535685 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.05□□□□□ -0.32
CCDC60-202ENST00000535685 DCP1AQ9NPI6 582 aaPredicted RBP13.05□□□□□ -0.32
CCDC60-202ENST00000535685 ATP8A2Q9NTI2 1148 aa13.05□□□□□ -0.32
CCDC60-202ENST00000535685 TMOD4Q9NZQ9 345 aa13.05□□□□□ -0.32
CCDC60-202ENST00000535685 PLXNB2O15031 1838 aa13.04□□□□□ -0.32
CCDC60-202ENST00000535685 GDF11O95390 407 aa13.04□□□□□ -0.32
CCDC60-202ENST00000535685 GH2P01242 217 aa13.04□□□□□ -0.32
CCDC60-202ENST00000535685 EN2P19622 333 aaPredicted RBP13.04□□□□□ -0.32
CCDC60-202ENST00000535685 SHMT1P34896 483 aa13.04□□□□□ -0.32
CCDC60-202ENST00000535685 PLCD1P51178 756 aa13.04□□□□□ -0.32
CCDC60-202ENST00000535685 PRKCZQ05513 592 aa13.04□□□□□ -0.32
CCDC60-202ENST00000535685 CERKLQ49MI3 558 aaPredicted RBP13.04□□□□□ -0.32
CCDC60-202ENST00000535685 USP17L2Q6R6M4 530 aa13.04□□□□□ -0.32
CCDC60-202ENST00000535685 ANKRD13CQ8N6S4 541 aa13.04□□□□□ -0.32
CCDC60-202ENST00000535685 SH3TC2Q8TF17 1288 aa13.04□□□□□ -0.32
CCDC60-202ENST00000535685 GTF3C2Q8WUA4 911 aaPredicted RBP13.04□□□□□ -0.32
CCDC60-202ENST00000535685 EDC3Q96F86 508 aaKnown RBP13.04□□□□□ -0.32
CCDC60-202ENST00000535685 ECHDC1Q9NTX5 307 aa13.04□□□□□ -0.32
CCDC60-202ENST00000535685 TULP1O00294 542 aaPredicted RBP13.03□□□□□ -0.32
CCDC60-202ENST00000535685 POLR3DP05423 398 aaPredicted RBP13.03□□□□□ -0.32
CCDC60-202ENST00000535685 USP14P54578 494 aa13.03□□□□□ -0.32
CCDC60-202ENST00000535685 SHROOM1Q2M3G4 852 aaPredicted RBP13.03□□□□□ -0.32
CCDC60-202ENST00000535685 ZSCAN25Q6NSZ9 544 aa13.03□□□□□ -0.32
CCDC60-202ENST00000535685 LCORLQ8N3X6 602 aa13.03□□□□□ -0.32
CCDC60-202ENST00000535685 COA7Q96BR5 231 aa13.03□□□□□ -0.32
CCDC60-202ENST00000535685 KIAA1683Q9H0B3 1180 aa13.03□□□□□ -0.32
CCDC60-202ENST00000535685 CRISPLD2Q9H0B8 497 aa13.03□□□□□ -0.32
CCDC60-202ENST00000535685 EMILIN3Q9NT22 766 aa13.03□□□□□ -0.32
CCDC60-202ENST00000535685 GABRQQ9UN88 632 aa13.03□□□□□ -0.32
CCDC60-202ENST00000535685 TNPO2O14787 897 aaKnown RBP13.02□□□□□ -0.33
CCDC60-202ENST00000535685 SMARCA5O60264 1052 aaPredicted RBP13.02□□□□□ -0.33
CCDC60-202ENST00000535685 GJB1P08034 283 aa13.02□□□□□ -0.33
CCDC60-202ENST00000535685 GUCY1A2P33402 732 aa13.02□□□□□ -0.33
CCDC60-202ENST00000535685 FLT3LGP49771 235 aa13.02□□□□□ -0.33
CCDC60-202ENST00000535685 UBXN2AP68543 259 aa13.02□□□□□ -0.33
CCDC60-202ENST00000535685 IRX3P78415 501 aaPredicted RBP13.02□□□□□ -0.33
CCDC60-202ENST00000535685 ABCB5Q2M3G0 1257 aa13.02□□□□□ -0.33
CCDC60-202ENST00000535685 SLC4A8Q2Y0W8 1093 aa13.02□□□□□ -0.33
CCDC60-202ENST00000535685 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.02□□□□□ -0.33
CCDC60-202ENST00000535685 NKX2-3Q8TAU0 364 aa13.02□□□□□ -0.33
CCDC60-202ENST00000535685 P2RX7Q99572 595 aaKnown RBP13.02□□□□□ -0.33
CCDC60-202ENST00000535685 CABP5Q9NP86 173 aa13.02□□□□□ -0.33
CCDC60-202ENST00000535685 BMP2KQ9NSY1 1161 aaPredicted RBP13.02□□□□□ -0.33
CCDC60-202ENST00000535685 MCM9Q9NXL9 1143 aa13.02□□□□□ -0.33
CCDC60-202ENST00000535685 SWAP70Q9UH65 585 aa13.02□□□□□ -0.33
CCDC60-202ENST00000535685 RLFQ13129 1914 aa13.01□□□□□ -0.33
CCDC60-202ENST00000535685 ADCY3O60266 1144 aa13.01□□□□□ -0.33
CCDC60-202ENST00000535685 RRP1P56182 461 aaKnown RBP13.01□□□□□ -0.33
CCDC60-202ENST00000535685 HERVK_113P62684 666 aa13.01□□□□□ -0.33
CCDC60-202ENST00000535685 MFSD10Q14728 455 aa13.01□□□□□ -0.33
CCDC60-202ENST00000535685 MTFR1Q15390 333 aa13.01□□□□□ -0.33
CCDC60-202ENST00000535685 LBX2Q6XYB7 198 aa13.01□□□□□ -0.33
CCDC60-202ENST00000535685 SDR42E1Q8WUS8 393 aa13.01□□□□□ -0.33
CCDC60-202ENST00000535685 GPATCH3Q96I76 525 aa13.01□□□□□ -0.33
CCDC60-202ENST00000535685 ARMT1Q9H993 441 aa13.01□□□□□ -0.33
CCDC60-202ENST00000535685 GJD2Q9UKL4 321 aa13.01□□□□□ -0.33
CCDC60-202ENST00000535685 PCDHB15Q9Y5E8 787 aa13.01□□□□□ -0.33
CCDC60-202ENST00000535685 TTC41PQ6P2S7 1318 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 USP17L15C9J2P7 530 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 USP17L13C9JLJ4 530 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 USP17L11C9JVI0 530 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 USP17L18D6R9N7 530 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 USP17L22D6RA61 530 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 USP17L17D6RBQ6 530 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 USP17L19D6RCP7 530 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 USP17L20D6RJB6 530 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 MBD4O95243 580 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 GJA8P48165 433 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 USP17L24Q0WX57 530 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 C12orf60Q5U649 245 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 KBTBD3Q8NAB2 608 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 GPRC5AQ8NFJ5 357 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 DDX27Q96GQ7 796 aaKnown RBP13□□□□□ -0.33
CCDC60-202ENST00000535685 RBPJLQ9UBG7 517 aa13□□□□□ -0.33
CCDC60-202ENST00000535685 GREB1LQ9C091 1923 aaPredicted RBP13□□□□□ -0.33
CCDC60-202ENST00000535685 PARP14Q460N5 1801 aa12.99□□□□□ -0.33
CCDC60-202ENST00000535685 ZFYP08048 801 aaPredicted RBP12.99□□□□□ -0.33
CCDC60-202ENST00000535685 CCL5P13501 91 aa12.99□□□□□ -0.33
CCDC60-202ENST00000535685 AAMPQ13685 434 aa12.99□□□□□ -0.33
CCDC60-202ENST00000535685 GIMAP6Q6P9H5 292 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms