RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 FAM227BQ96M60 508 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 P2RX7Q99572 595 aaKnown RBP6.11□□□□□ -1.43
USH1C-210ENST00000534556 ASCC2Q9H1I8 757 aaPredicted RBP6.11□□□□□ -1.43
USH1C-210ENST00000534556 ATP8A2Q9NTI2 1148 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 AGTPBP1Q9UPW5 1226 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 PTCH2Q9Y6C5 1203 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 SLC4A4Q9Y6R1 1079 aa6.11□□□□□ -1.43
USH1C-210ENST00000534556 BAZ2BQ9UIF8 2168 aaKnown RBP6.11□□□□□ -1.43
USH1C-210ENST00000534556 ROBO3Q96MS0 1386 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 GLRX3O76003 335 aaKnown RBP6.1□□□□□ -1.43
USH1C-210ENST00000534556 HLA-DOAP06340 250 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 RASA1P20936 1047 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 OSBPP22059 807 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 PSMC4P43686 418 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 ABCB5Q2M3G0 1257 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 Q3C1V9 767 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 CERKLQ49MI3 558 aaPredicted RBP6.1□□□□□ -1.43
USH1C-210ENST00000534556 SBK1Q52WX2 424 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 OTUD7BQ6GQQ9 843 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 C16orf86Q6ZW13 317 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 TTC6Q86TZ1 520 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 PROCA1Q8NCQ7 364 aaPredicted RBP6.1□□□□□ -1.43
USH1C-210ENST00000534556 SH3TC2Q8TF17 1288 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 ERO1AQ96HE7 468 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.1□□□□□ -1.43
USH1C-210ENST00000534556 NBPF3Q9H094 633 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 EFCC1Q9HA90 598 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 RBPJLQ9UBG7 517 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 ZNF236Q9UL36 1845 aa6.1□□□□□ -1.43
USH1C-210ENST00000534556 IGKV6D-41A0A0C4DH26 115 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 USP17L10C9JJH3 530 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 GSPT1P15170 499 aaKnown RBP6.09□□□□□ -1.43
USH1C-210ENST00000534556 HOXA7P31268 230 aaPredicted RBP6.09□□□□□ -1.43
USH1C-210ENST00000534556 NMIQ13287 307 aaPredicted RBP6.09□□□□□ -1.43
USH1C-210ENST00000534556 RAB3GAP1Q15042 981 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 MTFR1Q15390 333 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 FASTKD5Q7L8L6 764 aaKnown RBP6.09□□□□□ -1.43
USH1C-210ENST00000534556 RASGRP2Q7LDG7 609 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 CERS3Q8IU89 383 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 IFNL3Q8IZI9 196 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 ANKRD13CQ8N6S4 541 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 C12orf42Q96LP6 360 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 FSD1Q9BTV5 496 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 KIAA1683Q9H0B3 1180 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 PORCNQ9H237 461 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 RWDD1Q9H446 243 aaPredicted RBP6.09□□□□□ -1.43
USH1C-210ENST00000534556 OSBPL3Q9H4L5 887 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 BTBD7Q9P203 1132 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 GJD2Q9UKL4 321 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 SLC45A1Q9Y2W3 748 aa6.09□□□□□ -1.43
USH1C-210ENST00000534556 SZT2Q5T011 3432 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 MINDY4BA8MYZ0 360 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 PATL2C9JE40 543 aaKnown RBP6.08□□□□□ -1.44
USH1C-210ENST00000534556 ERC2O15083 957 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 PRDM1O75626 825 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 MYCP01106 439 aaPredicted RBP6.08□□□□□ -1.44
USH1C-210ENST00000534556 ZFYP08048 801 aaPredicted RBP6.08□□□□□ -1.44
USH1C-210ENST00000534556 EEF2P13639 858 aaKnown RBP6.08□□□□□ -1.44
USH1C-210ENST00000534556 VCAM1P19320 739 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 HERVK_113P62684 666 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 PRKCZQ05513 592 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 CTDSPL2Q05D32 466 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 TRIM32Q13049 653 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 AAMPQ13685 434 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 PKN2Q16513 984 aaKnown RBP6.08□□□□□ -1.44
USH1C-210ENST00000534556 ZSCAN25Q6NSZ9 544 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 CATSPERGQ6ZRH7 1159 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 ARMC5Q96C12 935 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 GPATCH3Q96I76 525 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 ZNF333Q96JL9 665 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 PARK7Q99497 189 aaKnown RBP6.08□□□□□ -1.44
USH1C-210ENST00000534556 GINM1Q9NU53 330 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 FBXO28Q9NVF7 368 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 MORF4L1Q9UBU8 362 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 SRRDQ9UH36 339 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.08□□□□□ -1.44
USH1C-210ENST00000534556 LRRC37A2A6NM11 1700 aa6.08□□□□□ -1.44
USH1C-210ENST00000534556 A0A0C4DFX4 3053 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 SPDYE16A6NNV3 312 aaPredicted RBP6.07□□□□□ -1.44
USH1C-210ENST00000534556 C19orf81C9J6K1 198 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 MPHOSPH10O00566 681 aaKnown RBP6.07□□□□□ -1.44
USH1C-210ENST00000534556 NMT2O60551 498 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 FGAP02671 866 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 ELNP15502 786 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 EN2P19622 333 aaPredicted RBP6.07□□□□□ -1.44
USH1C-210ENST00000534556 SDSP20132 328 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 FLT3LGP49771 235 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 COL9A3Q14050 684 aaPredicted RBP6.07□□□□□ -1.44
USH1C-210ENST00000534556 FAM110CQ1W6H9 321 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 FAM47AQ5JRC9 791 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 GIMAP6Q6P9H5 292 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 USP17L2Q6R6M4 530 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 SPICE1Q8N0Z3 855 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 USP6NLQ92738 828 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 EVI5LQ96CN4 794 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 SHISA4Q96DD7 197 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 NUP88Q99567 741 aaPredicted RBP6.07□□□□□ -1.44
USH1C-210ENST00000534556 TRIM34Q9BYJ4 488 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 TBC1D2Q9BYX2 928 aa6.07□□□□□ -1.44
USH1C-210ENST00000534556 RPAP3Q9H6T3 665 aaPredicted RBP6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms