RNA–Protein interactions for RNA: ENST00000533196.1

SMPD1-209, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 3

Gene SMPD1, Length 425 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-209ENST00000533196 PRKAB2O43741 272 aa28.22■■■□□ 2.11
SMPD1-209ENST00000533196 GJB1P08034 283 aa28.22■■■□□ 2.11
SMPD1-209ENST00000533196 USP17L24Q0WX57 530 aa28.22■■■□□ 2.11
SMPD1-209ENST00000533196 SLFNL1Q499Z3 407 aa28.22■■■□□ 2.11
SMPD1-209ENST00000533196 CCL5P13501 91 aa28.21■■■□□ 2.11
SMPD1-209ENST00000533196 GUCY1A2P33402 732 aa28.21■■■□□ 2.11
SMPD1-209ENST00000533196 C12orf60Q5U649 245 aa28.21■■■□□ 2.11
SMPD1-209ENST00000533196 TMEM179Q6ZVK1 233 aa28.21■■■□□ 2.11
SMPD1-209ENST00000533196 SLC4A4Q9Y6R1 1079 aa28.21■■■□□ 2.11
SMPD1-209ENST00000533196 ZFYP08048 801 aaPredicted RBP28.2■■■□□ 2.1
SMPD1-209ENST00000533196 LRRFIP1Q32MZ4 808 aaKnown RBP28.2■■■□□ 2.1
SMPD1-209ENST00000533196 PUS7LQ9H0K6 701 aaKnown RBP28.2■■■□□ 2.1
SMPD1-209ENST00000533196 RNF208Q9H0X6 261 aa28.2■■■□□ 2.1
SMPD1-209ENST00000533196 RBPJLQ9UBG7 517 aa28.2■■■□□ 2.1
SMPD1-209ENST00000533196 ERC2O15083 957 aa28.19■■■□□ 2.1
SMPD1-209ENST00000533196 CYP2D6P10635 497 aa28.19■■■□□ 2.1
SMPD1-209ENST00000533196 GJA8P48165 433 aa28.19■■■□□ 2.1
SMPD1-209ENST00000533196 SEPT2Q15019 361 aa28.19■■■□□ 2.1
SMPD1-209ENST00000533196 CATSPERGQ6ZRH7 1159 aa28.19■■■□□ 2.1
SMPD1-209ENST00000533196 ACER1Q8TDN7 264 aa28.19■■■□□ 2.1
SMPD1-209ENST00000533196 CCDC17Q96LX7 622 aa28.19■■■□□ 2.1
SMPD1-209ENST00000533196 GJD2Q9UKL4 321 aa28.19■■■□□ 2.1
SMPD1-209ENST00000533196 MPHOSPH10O00566 681 aaKnown RBP28.18■■■□□ 2.1
SMPD1-209ENST00000533196 MAPK4P31152 587 aa28.18■■■□□ 2.1
SMPD1-209ENST00000533196 EVX2Q03828 476 aa28.18■■■□□ 2.1
SMPD1-209ENST00000533196 ZYXQ15942 572 aaKnown RBP28.18■■■□□ 2.1
SMPD1-209ENST00000533196 TXNRD2Q9NNW7 524 aa28.18■■■□□ 2.1
SMPD1-209ENST00000533196 RABGAP1Q9Y3P9 1069 aa28.18■■■□□ 2.1
SMPD1-209ENST00000533196 USP17L12C9JPN9 530 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 USP17L21D6R901 530 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 CHGBP05060 677 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 INHAP05111 366 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 ELNP15502 786 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 VCAM1P19320 739 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 ERVK-9P63128 1117 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 ERVK-24P63145 666 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 AAMPQ13685 434 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 GIMAP6Q6P9H5 292 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 LBX2Q6XYB7 198 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 APPBP2Q92624 585 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 DYNLL2Q96FJ2 89 aa28.17■■■□□ 2.1
SMPD1-209ENST00000533196 ARPP21Q9UBL0 812 aaPredicted RBP28.17■■■□□ 2.1
SMPD1-209ENST00000533196 PLXNB2O15031 1838 aa28.16■■■□□ 2.1
SMPD1-209ENST00000533196 RNF113AO15541 343 aaKnown RBP28.16■■■□□ 2.1
SMPD1-209ENST00000533196 GLRX3O76003 335 aaKnown RBP28.16■■■□□ 2.1
SMPD1-209ENST00000533196 C16orf86Q6ZW13 317 aa28.16■■■□□ 2.1
SMPD1-209ENST00000533196 SLC44A5Q8NCS7 719 aa28.16■■■□□ 2.1
SMPD1-209ENST00000533196 SOCS4Q8WXH5 440 aa28.16■■■□□ 2.1
SMPD1-209ENST00000533196 STRBPQ96SI9 672 aaKnown RBP28.16■■■□□ 2.1
SMPD1-209ENST00000533196 MKI67P46013 3256 aaKnown RBP28.16■■■□□ 2.1
SMPD1-209ENST00000533196 CDK8P49336 464 aa28.15■■■□□ 2.1
SMPD1-209ENST00000533196 SHISA4Q96DD7 197 aa28.15■■■□□ 2.1
SMPD1-209ENST00000533196 CRBNQ96SW2 442 aa28.15■■■□□ 2.1
SMPD1-209ENST00000533196 UNC93B1Q9H1C4 597 aa28.15■■■□□ 2.1
SMPD1-209ENST00000533196 SH2D4AQ9H788 454 aa28.15■■■□□ 2.1
SMPD1-209ENST00000533196 ZBTB47Q9UFB7 747 aaPredicted RBP28.15■■■□□ 2.1
SMPD1-209ENST00000533196 HMGCRP04035 888 aa28.14■■■□□ 2.1
SMPD1-209ENST00000533196 CCNA1P78396 465 aa28.14■■■□□ 2.1
SMPD1-209ENST00000533196 Q3C1V9 767 aa28.14■■■□□ 2.1
SMPD1-209ENST00000533196 SBK1Q52WX2 424 aa28.14■■■□□ 2.1
SMPD1-209ENST00000533196 TSHZ3Q63HK5 1081 aa28.14■■■□□ 2.1
SMPD1-209ENST00000533196 CTR9Q6PD62 1173 aa28.14■■■□□ 2.1
SMPD1-209ENST00000533196 CCAR1Q8IX12 1150 aaKnown RBP28.14■■■□□ 2.1
SMPD1-209ENST00000533196 NUDT12Q9BQG2 462 aa28.14■■■□□ 2.1
SMPD1-209ENST00000533196 A0A1W2PRG0 241 aa28.13■■■□□ 2.09
SMPD1-209ENST00000533196 SGPL1O95470 568 aa28.13■■■□□ 2.09
SMPD1-209ENST00000533196 XRCC5P13010 732 aaKnown RBP28.13■■■□□ 2.09
SMPD1-209ENST00000533196 GNAT2P19087 354 aa28.13■■■□□ 2.09
SMPD1-209ENST00000533196 PI4K2BQ8TCG2 481 aa28.13■■■□□ 2.09
SMPD1-209ENST00000533196 U2AF1L4Q8WU68 220 aaKnown RBP28.13■■■□□ 2.09
SMPD1-209ENST00000533196 GCC1Q96CN9 775 aa28.13■■■□□ 2.09
SMPD1-209ENST00000533196 PAGR1Q9BTK6 254 aa28.13■■■□□ 2.09
SMPD1-209ENST00000533196 RPAP3Q9H6T3 665 aaPredicted RBP28.13■■■□□ 2.09
SMPD1-209ENST00000533196 ARHGEF10LQ9HCE6 1279 aa28.13■■■□□ 2.09
SMPD1-209ENST00000533196 AKR1B1P15121 316 aa28.12■■■□□ 2.09
SMPD1-209ENST00000533196 HDAC1Q13547 482 aaPredicted RBP28.12■■■□□ 2.09
SMPD1-209ENST00000533196 POTEEQ6S8J3 1075 aa28.12■■■□□ 2.09
SMPD1-209ENST00000533196 TRMT44Q8IYL2 757 aaKnown RBP28.12■■■□□ 2.09
SMPD1-209ENST00000533196 LPAR1Q92633 364 aa28.12■■■□□ 2.09
SMPD1-209ENST00000533196 OSBP2Q969R2 916 aa28.12■■■□□ 2.09
SMPD1-209ENST00000533196 YTHDC1Q96MU7 727 aaKnown RBP28.12■■■□□ 2.09
SMPD1-209ENST00000533196 PAK6Q9NQU5 681 aaPredicted RBP28.12■■■□□ 2.09
SMPD1-209ENST00000533196 CYP2D7A0A087X1C5 515 aa28.11■■■□□ 2.09
SMPD1-209ENST00000533196 MX1P20591 662 aa28.11■■■□□ 2.09
SMPD1-209ENST00000533196 ICA1Q05084 483 aa28.11■■■□□ 2.09
SMPD1-209ENST00000533196 HOXC10Q9NYD6 342 aa28.11■■■□□ 2.09
SMPD1-209ENST00000533196 TMX2Q9Y320 296 aa28.11■■■□□ 2.09
SMPD1-209ENST00000533196 GSG1L2A8MUP6 293 aa28.1■■■□□ 2.09
SMPD1-209ENST00000533196 GPR142Q7Z601 462 aa28.1■■■□□ 2.09
SMPD1-209ENST00000533196 PLEKHH3Q7Z736 793 aa28.1■■■□□ 2.09
SMPD1-209ENST00000533196 PORCNQ9H237 461 aa28.1■■■□□ 2.09
SMPD1-209ENST00000533196 SPDYE16A6NNV3 312 aaPredicted RBP28.09■■■□□ 2.09
SMPD1-209ENST00000533196 GPAA1O43292 621 aa28.09■■■□□ 2.09
SMPD1-209ENST00000533196 PEX10O60683 326 aa28.09■■■□□ 2.09
SMPD1-209ENST00000533196 CNMDO75829 334 aa28.09■■■□□ 2.09
SMPD1-209ENST00000533196 COG2Q14746 738 aa28.09■■■□□ 2.09
SMPD1-209ENST00000533196 UBE2Q1Q7Z7E8 422 aa28.09■■■□□ 2.09
SMPD1-209ENST00000533196 KANSL2Q9H9L4 492 aa28.09■■■□□ 2.09
SMPD1-209ENST00000533196 CYP2B6P20813 491 aa28.08■■■□□ 2.09
SMPD1-209ENST00000533196 SIAH1Q8IUQ4 282 aa28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms