RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TNS4Q8IZW8 715 aa17.94■□□□□ 0.46
CPSF1-208ENST00000532560 PPARAQ07869 468 aa17.93■□□□□ 0.46
CPSF1-208ENST00000532560 PABPC4Q13310 644 aaKnown RBP eCLIP17.93■□□□□ 0.46
CPSF1-208ENST00000532560 CWC27Q6UX04 472 aaKnown RBP17.93■□□□□ 0.46
CPSF1-208ENST00000532560 C12orf42Q96LP6 360 aa17.93■□□□□ 0.46
CPSF1-208ENST00000532560 FEZ1Q99689 392 aa17.93■□□□□ 0.46
CPSF1-208ENST00000532560 KIAA1683Q9H0B3 1180 aa17.93■□□□□ 0.46
CPSF1-208ENST00000532560 ZNF287Q9HBT7 754 aa17.93■□□□□ 0.46
CPSF1-208ENST00000532560 TMOD4Q9NZQ9 345 aa17.93■□□□□ 0.46
CPSF1-208ENST00000532560 HSPD1P10809 573 aaKnown RBP17.92■□□□□ 0.46
CPSF1-208ENST00000532560 RASA1P20936 1047 aa17.92■□□□□ 0.46
CPSF1-208ENST00000532560 USP14P54578 494 aa17.92■□□□□ 0.46
CPSF1-208ENST00000532560 SP3Q02447 781 aa17.92■□□□□ 0.46
CPSF1-208ENST00000532560 DGKZQ13574 1117 aa17.92■□□□□ 0.46
CPSF1-208ENST00000532560 USP17L2Q6R6M4 530 aa17.92■□□□□ 0.46
CPSF1-208ENST00000532560 C17orf99Q6UX52 265 aa17.92■□□□□ 0.46
CPSF1-208ENST00000532560 CTU1Q7Z7A3 348 aaKnown RBP17.92■□□□□ 0.46
CPSF1-208ENST00000532560 ERO1AQ96HE7 468 aa17.92■□□□□ 0.46
CPSF1-208ENST00000532560 PNMA3Q9UL41 463 aa17.92■□□□□ 0.46
CPSF1-208ENST00000532560 SLC3A2P08195 630 aaKnown RBP17.91■□□□□ 0.46
CPSF1-208ENST00000532560 CYP2C8P10632 490 aa17.91■□□□□ 0.46
CPSF1-208ENST00000532560 ICA1Q05084 483 aa17.91■□□□□ 0.46
CPSF1-208ENST00000532560 ACER1Q8TDN7 264 aa17.91■□□□□ 0.46
CPSF1-208ENST00000532560 MKNK2Q9HBH9 465 aa17.91■□□□□ 0.46
CPSF1-208ENST00000532560 EMILIN3Q9NT22 766 aa17.91■□□□□ 0.46
CPSF1-208ENST00000532560 ANAPC4Q9UJX5 808 aa17.91■□□□□ 0.46
CPSF1-208ENST00000532560 RAD50Q92878 1312 aa17.91■□□□□ 0.46
CPSF1-208ENST00000532560 FGAP02671 866 aa17.9■□□□□ 0.46
CPSF1-208ENST00000532560 HOXA7P31268 230 aaPredicted RBP17.9■□□□□ 0.46
CPSF1-208ENST00000532560 PDE4BQ07343 736 aa17.9■□□□□ 0.46
CPSF1-208ENST00000532560 PLIN4Q96Q06 1357 aa17.9■□□□□ 0.46
CPSF1-208ENST00000532560 BCRP11274 1271 aa17.89■□□□□ 0.45
CPSF1-208ENST00000532560 CLEC10AQ8IUN9 316 aa17.89■□□□□ 0.45
CPSF1-208ENST00000532560 STK11IPQ8N1F8 1099 aa17.89■□□□□ 0.45
CPSF1-208ENST00000532560 CD99L2Q8TCZ2 262 aa17.89■□□□□ 0.45
CPSF1-208ENST00000532560 SMCR8Q8TEV9 937 aaPredicted RBP17.89■□□□□ 0.45
CPSF1-208ENST00000532560 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.89■□□□□ 0.45
CPSF1-208ENST00000532560 MCOLN1Q9GZU1 580 aa17.89■□□□□ 0.45
CPSF1-208ENST00000532560 ASCC2Q9H1I8 757 aaPredicted RBP17.89■□□□□ 0.45
CPSF1-208ENST00000532560 SH2D4AQ9H788 454 aa17.89■□□□□ 0.45
CPSF1-208ENST00000532560 KANSL2Q9H9L4 492 aa17.89■□□□□ 0.45
CPSF1-208ENST00000532560 ARHGEF10LQ9HCE6 1279 aa17.89■□□□□ 0.45
CPSF1-208ENST00000532560 CPA4Q9UI42 421 aa17.89■□□□□ 0.45
CPSF1-208ENST00000532560 A0A1W2PRG0 241 aa17.88■□□□□ 0.45
CPSF1-208ENST00000532560 PRDM1O75626 825 aa17.88■□□□□ 0.45
CPSF1-208ENST00000532560 VCAM1P19320 739 aa17.88■□□□□ 0.45
CPSF1-208ENST00000532560 OSBPP22059 807 aa17.88■□□□□ 0.45
CPSF1-208ENST00000532560 CHMLP26374 656 aa17.88■□□□□ 0.45
CPSF1-208ENST00000532560 ZYXQ15942 572 aaKnown RBP17.88■□□□□ 0.45
CPSF1-208ENST00000532560 PKN2Q16513 984 aaKnown RBP17.88■□□□□ 0.45
CPSF1-208ENST00000532560 SIAH1Q8IUQ4 282 aa17.88■□□□□ 0.45
CPSF1-208ENST00000532560 DSCC1Q9BVC3 393 aa17.88■□□□□ 0.45
CPSF1-208ENST00000532560 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.88■□□□□ 0.45
CPSF1-208ENST00000532560 LAMA4Q16363 1823 aa17.88■□□□□ 0.45
CPSF1-208ENST00000532560 IGKV6D-41A0A0C4DH26 115 aa17.87■□□□□ 0.45
CPSF1-208ENST00000532560 IRX3P78415 501 aaPredicted RBP17.87■□□□□ 0.45
CPSF1-208ENST00000532560 LACTBP83111 547 aaPredicted RBP17.87■□□□□ 0.45
CPSF1-208ENST00000532560 CTDSPL2Q05D32 466 aa17.87■□□□□ 0.45
CPSF1-208ENST00000532560 ZNF444Q8N0Y2 327 aaPredicted RBP17.87■□□□□ 0.45
CPSF1-208ENST00000532560 RUFY2Q8WXA3 655 aa17.87■□□□□ 0.45
CPSF1-208ENST00000532560 IL25Q9H293 177 aa17.87■□□□□ 0.45
CPSF1-208ENST00000532560 TMX2Q9Y320 296 aa17.87■□□□□ 0.45
CPSF1-208ENST00000532560 FGRP09769 529 aa17.86■□□□□ 0.45
CPSF1-208ENST00000532560 EEF2P13639 858 aaKnown RBP17.86■□□□□ 0.45
CPSF1-208ENST00000532560 GCLCP48506 637 aaPredicted RBP17.86■□□□□ 0.45
CPSF1-208ENST00000532560 CAP1Q01518 475 aa17.86■□□□□ 0.45
CPSF1-208ENST00000532560 KIF22Q14807 665 aa17.86■□□□□ 0.45
CPSF1-208ENST00000532560 ARHGEF6Q15052 776 aa17.86■□□□□ 0.45
CPSF1-208ENST00000532560 FAM110CQ1W6H9 321 aa17.86■□□□□ 0.45
CPSF1-208ENST00000532560 BMP2KLQ5H9B9 411 aa17.86■□□□□ 0.45
CPSF1-208ENST00000532560 OTOP1Q7RTM1 612 aa17.86■□□□□ 0.45
CPSF1-208ENST00000532560 SKAP1Q86WV1 359 aa17.86■□□□□ 0.45
CPSF1-208ENST00000532560 LPAR1Q92633 364 aa17.86■□□□□ 0.45
CPSF1-208ENST00000532560 VCPKMTQ9H867 229 aa17.86■□□□□ 0.45
CPSF1-208ENST00000532560 USP17L15C9J2P7 530 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 USP17L13C9JLJ4 530 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 USP17L11C9JVI0 530 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 USP17L18D6R9N7 530 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 USP17L22D6RA61 530 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 USP17L17D6RBQ6 530 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 USP17L19D6RCP7 530 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 USP17L20D6RJB6 530 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 ORC4O43929 436 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 USP17L24Q0WX57 530 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 NEDD1Q8NHV4 660 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 GTF3C2Q8WUA4 911 aaPredicted RBP17.85■□□□□ 0.45
CPSF1-208ENST00000532560 EFCC1Q9HA90 598 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 PPP4R2Q9NY27 417 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 NYAP2Q9P242 653 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 TRIM17Q9Y577 477 aa17.85■□□□□ 0.45
CPSF1-208ENST00000532560 ZSWIM8A7E2V4 1837 aa17.84■□□□□ 0.45
CPSF1-208ENST00000532560 GNRH1P01148 92 aa17.84■□□□□ 0.45
CPSF1-208ENST00000532560 TSPY3P0CV98 308 aa17.84■□□□□ 0.45
CPSF1-208ENST00000532560 TSPY8P0CW00 308 aa17.84■□□□□ 0.45
CPSF1-208ENST00000532560 PCP11498 1178 aaKnown RBP17.84■□□□□ 0.45
CPSF1-208ENST00000532560 HERVK_113P62684 666 aa17.84■□□□□ 0.45
CPSF1-208ENST00000532560 ANKRD13CQ8N6S4 541 aa17.84■□□□□ 0.45
CPSF1-208ENST00000532560 ARHGAP39Q9C0H5 1083 aa17.84■□□□□ 0.45
CPSF1-208ENST00000532560 RPAP3Q9H6T3 665 aaPredicted RBP17.84■□□□□ 0.45
CPSF1-208ENST00000532560 SYNPO2Q9UMS6 1093 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms