RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TSPOAP1O95153 1857 aa6.68□□□□□ -1.34
CD44-235ENST00000532339 CCDC27Q2M243 656 aa6.68□□□□□ -1.34
CD44-235ENST00000532339 SLC6A19Q695T7 634 aa6.68□□□□□ -1.34
CD44-235ENST00000532339 CCDC84Q86UT8 332 aaPredicted RBP6.68□□□□□ -1.34
CD44-235ENST00000532339 PHC3Q8NDX5 983 aa6.68□□□□□ -1.34
CD44-235ENST00000532339 RIN3Q8TB24 985 aa6.68□□□□□ -1.34
CD44-235ENST00000532339 XAGE3Q8WTP9 111 aa6.68□□□□□ -1.34
CD44-235ENST00000532339 JARID2Q92833 1246 aaPredicted RBP6.68□□□□□ -1.34
CD44-235ENST00000532339 HSPA12BQ96MM6 686 aa6.68□□□□□ -1.34
CD44-235ENST00000532339 LMCD1Q9NZU5 365 aa6.68□□□□□ -1.34
CD44-235ENST00000532339 TJP2Q9UDY2 1190 aa6.68□□□□□ -1.34
CD44-235ENST00000532339 ADAM30Q9UKF2 790 aa6.68□□□□□ -1.34
CD44-235ENST00000532339 PCF11O94913 1555 aaKnown RBP6.68□□□□□ -1.34
CD44-235ENST00000532339 PRR33A8MZF0 331 aa6.67□□□□□ -1.34
CD44-235ENST00000532339 KIR3DL1P43629 444 aa6.67□□□□□ -1.34
CD44-235ENST00000532339 TRIM26Q12899 539 aaPredicted RBP6.67□□□□□ -1.34
CD44-235ENST00000532339 CDKAL1Q5VV42 579 aa6.67□□□□□ -1.34
CD44-235ENST00000532339 POU5F2Q8N7G0 328 aa6.67□□□□□ -1.34
CD44-235ENST00000532339 TMEM87BQ96K49 555 aa6.67□□□□□ -1.34
CD44-235ENST00000532339 PRDM7Q9NQW5 492 aa6.67□□□□□ -1.34
CD44-235ENST00000532339 SEMA3GQ9NS98 782 aa6.67□□□□□ -1.34
CD44-235ENST00000532339 VTI1BQ9UEU0 232 aa6.67□□□□□ -1.34
CD44-235ENST00000532339 CAPN6Q9Y6Q1 641 aa6.67□□□□□ -1.34
CD44-235ENST00000532339 WDR97A6NE52 1622 aa6.66□□□□□ -1.34
CD44-235ENST00000532339 BPNT1O95861 308 aa6.66□□□□□ -1.34
CD44-235ENST00000532339 CBX7O95931 251 aa6.66□□□□□ -1.34
CD44-235ENST00000532339 LMNB2Q03252 620 aa6.66□□□□□ -1.34
CD44-235ENST00000532339 THAP5Q7Z6K1 395 aa6.66□□□□□ -1.34
CD44-235ENST00000532339 MCATQ8IVS2 390 aaKnown RBP6.66□□□□□ -1.34
CD44-235ENST00000532339 FLAD1Q8NFF5 587 aa6.66□□□□□ -1.34
CD44-235ENST00000532339 FAM168AQ92567 244 aa6.66□□□□□ -1.34
CD44-235ENST00000532339 PODXL2Q9NZ53 605 aa6.66□□□□□ -1.34
CD44-235ENST00000532339 CNTNAP4Q9C0A0 1308 aa6.66□□□□□ -1.34
CD44-235ENST00000532339 CARMIL2Q6F5E8 1435 aa6.66□□□□□ -1.34
CD44-235ENST00000532339 CEP170Q5SW79 1584 aa6.65□□□□□ -1.34
CD44-235ENST00000532339 DNMBPQ6XZF7 1577 aa6.65□□□□□ -1.34
CD44-235ENST00000532339 H3BS24 57 aa6.65□□□□□ -1.34
CD44-235ENST00000532339 ETV3P41162 512 aa6.65□□□□□ -1.34
CD44-235ENST00000532339 CDH24Q86UP0 819 aa6.65□□□□□ -1.34
CD44-235ENST00000532339 TMEM40Q8WWA1 233 aa6.65□□□□□ -1.34
CD44-235ENST00000532339 DPH2Q9BQC3 489 aaPredicted RBP6.65□□□□□ -1.34
CD44-235ENST00000532339 GZF1Q9H116 711 aaPredicted RBP6.65□□□□□ -1.34
CD44-235ENST00000532339 ATP13A1Q9HD20 1204 aa6.65□□□□□ -1.34
CD44-235ENST00000532339 ST14Q9Y5Y6 855 aa6.65□□□□□ -1.34
CD44-235ENST00000532339 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.65□□□□□ -1.34
CD44-235ENST00000532339 GRIN2BQ13224 1484 aa6.65□□□□□ -1.35
CD44-235ENST00000532339 CILPO75339 1184 aa6.64□□□□□ -1.35
CD44-235ENST00000532339 CAMK2GQ13555 558 aaPredicted RBP6.64□□□□□ -1.35
CD44-235ENST00000532339 PWP1Q13610 501 aa6.64□□□□□ -1.35
CD44-235ENST00000532339 RELL1Q8IUW5 271 aa6.64□□□□□ -1.35
CD44-235ENST00000532339 ACSF2Q96CM8 615 aaPredicted RBP6.64□□□□□ -1.35
CD44-235ENST00000532339 RSRP1Q9BUV0 290 aa6.64□□□□□ -1.35
CD44-235ENST00000532339 CARS2Q9HA77 564 aaKnown RBP6.64□□□□□ -1.35
CD44-235ENST00000532339 POLA1P09884 1462 aaPredicted RBP6.64□□□□□ -1.35
CD44-235ENST00000532339 PF4P02776 101 aa6.63□□□□□ -1.35
CD44-235ENST00000532339 PLCG1P19174 1290 aa6.63□□□□□ -1.35
CD44-235ENST00000532339 PTPRMP28827 1452 aa6.63□□□□□ -1.35
CD44-235ENST00000532339 TAGLNQ01995 201 aaKnown RBP6.63□□□□□ -1.35
CD44-235ENST00000532339 BNC2Q6ZN30 1099 aaPredicted RBP6.63□□□□□ -1.35
CD44-235ENST00000532339 PIWIL2Q8TC59 973 aaKnown RBP6.63□□□□□ -1.35
CD44-235ENST00000532339 GATAD2BQ8WXI9 593 aa6.63□□□□□ -1.35
CD44-235ENST00000532339 TMEM74Q96NL1 305 aa6.63□□□□□ -1.35
CD44-235ENST00000532339 CTNND2Q9UQB3 1225 aa6.63□□□□□ -1.35
CD44-235ENST00000532339 FAM221AA4D161 298 aa6.62□□□□□ -1.35
CD44-235ENST00000532339 BTBD11A6QL63 1104 aa6.62□□□□□ -1.35
CD44-235ENST00000532339 F6X3S4 739 aa6.62□□□□□ -1.35
CD44-235ENST00000532339 GBP2P32456 591 aaPredicted RBP6.62□□□□□ -1.35
CD44-235ENST00000532339 YARSP54577 528 aaKnown RBP6.62□□□□□ -1.35
CD44-235ENST00000532339 TNK2Q07912 1038 aa6.62□□□□□ -1.35
CD44-235ENST00000532339 ZSWIM9Q86XI8 627 aa6.62□□□□□ -1.35
CD44-235ENST00000532339 FAM13CQ8NE31 585 aa6.62□□□□□ -1.35
CD44-235ENST00000532339 CYB5D2Q8WUJ1 264 aa6.62□□□□□ -1.35
CD44-235ENST00000532339 UBE2FQ969M7 185 aa6.62□□□□□ -1.35
CD44-235ENST00000532339 CCDC120Q96HB5 630 aa6.62□□□□□ -1.35
CD44-235ENST00000532339 RHOVQ96L33 236 aa6.62□□□□□ -1.35
CD44-235ENST00000532339 CEP131Q9UPN4 1083 aa6.62□□□□□ -1.35
CD44-235ENST00000532339 CORINQ9Y5Q5 1042 aa6.62□□□□□ -1.35
CD44-235ENST00000532339 F13A1P00488 732 aa6.61□□□□□ -1.35
CD44-235ENST00000532339 C8AP07357 584 aa6.61□□□□□ -1.35
CD44-235ENST00000532339 AFMP43652 599 aa6.61□□□□□ -1.35
CD44-235ENST00000532339 KCNMB1Q16558 191 aa6.61□□□□□ -1.35
CD44-235ENST00000532339 TMEM201Q5SNT2 666 aa6.61□□□□□ -1.35
CD44-235ENST00000532339 DNAJB8Q8NHS0 232 aa6.61□□□□□ -1.35
CD44-235ENST00000532339 ZSWIM5Q9P217 1185 aa6.61□□□□□ -1.35
CD44-235ENST00000532339 RAD54L2Q9Y4B4 1467 aa6.6□□□□□ -1.35
CD44-235ENST00000532339 SOGA1O94964 1423 aa6.6□□□□□ -1.35
CD44-235ENST00000532339 PRDM2Q13029 1718 aa6.6□□□□□ -1.35
CD44-235ENST00000532339 FARP2O94887 1054 aaPredicted RBP6.6□□□□□ -1.35
CD44-235ENST00000532339 SNAP47Q5SQN1 464 aa6.6□□□□□ -1.35
CD44-235ENST00000532339 TMPRSS7Q7RTY8 843 aa6.6□□□□□ -1.35
CD44-235ENST00000532339 BCL11AQ9H165 835 aa6.6□□□□□ -1.35
CD44-235ENST00000532339 TRIT1Q9H3H1 467 aaKnown RBP6.6□□□□□ -1.35
CD44-235ENST00000532339 FAM53CQ9NYF3 392 aa6.6□□□□□ -1.35
CD44-235ENST00000532339 SHROOM2Q13796 1616 aa6.6□□□□□ -1.35
CD44-235ENST00000532339 PRR36Q9H6K5 1346 aa6.59□□□□□ -1.35
CD44-235ENST00000532339 GDNFP39905 211 aa6.59□□□□□ -1.35
CD44-235ENST00000532339 HSPA2P54652 639 aa6.59□□□□□ -1.35
CD44-235ENST00000532339 FAM160A1Q05DH4 1040 aa6.59□□□□□ -1.35
CD44-235ENST00000532339 MPP2Q14168 576 aa6.59□□□□□ -1.35
CD44-235ENST00000532339 PPP1R13LQ8WUF5 828 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms