RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 TRIM60Q495X7 471 aa10.31□□□□□ -0.76
CD44-232ENST00000531118 SH3D19Q5HYK7 790 aa10.31□□□□□ -0.76
CD44-232ENST00000531118 MORN1Q5T089 497 aa10.31□□□□□ -0.76
CD44-232ENST00000531118 LPAR1Q92633 364 aa10.31□□□□□ -0.76
CD44-232ENST00000531118 ASB2Q96Q27 587 aa10.31□□□□□ -0.76
CD44-232ENST00000531118 OSBPL5Q9H0X9 879 aaPredicted RBP10.31□□□□□ -0.76
CD44-232ENST00000531118 PORCNQ9H237 461 aa10.31□□□□□ -0.76
CD44-232ENST00000531118 C9orf78Q9NZ63 289 aaPredicted RBP10.31□□□□□ -0.76
CD44-232ENST00000531118 UTYO14607 1347 aa10.31□□□□□ -0.76
CD44-232ENST00000531118 SALL1Q9NSC2 1324 aa10.31□□□□□ -0.76
CD44-232ENST00000531118 MSCO60682 206 aa10.3□□□□□ -0.76
CD44-232ENST00000531118 SLC5A1P13866 664 aa10.3□□□□□ -0.76
CD44-232ENST00000531118 HERVK_113P62684 666 aa10.3□□□□□ -0.76
CD44-232ENST00000531118 ERVK-9P63128 1117 aa10.3□□□□□ -0.76
CD44-232ENST00000531118 ERVK-24P63145 666 aa10.3□□□□□ -0.76
CD44-232ENST00000531118 SNX17Q15036 470 aa10.3□□□□□ -0.76
CD44-232ENST00000531118 RABL6Q3YEC7 729 aaPredicted RBP10.3□□□□□ -0.76
CD44-232ENST00000531118 ANKRD44Q8N8A2 993 aa10.3□□□□□ -0.76
CD44-232ENST00000531118 GPRC5AQ8NFJ5 357 aa10.3□□□□□ -0.76
CD44-232ENST00000531118 KHSRPQ92945 711 aaKnown RBP eCLIP10.3□□□□□ -0.76
CD44-232ENST00000531118 BICC1Q9H694 974 aaKnown RBP10.3□□□□□ -0.76
CD44-232ENST00000531118 FLRT1Q9NZU1 646 aa10.3□□□□□ -0.76
CD44-232ENST00000531118 HCN4Q9Y3Q4 1203 aa10.3□□□□□ -0.76
CD44-232ENST00000531118 FANCIQ9NVI1 1328 aa10.3□□□□□ -0.76
CD44-232ENST00000531118 TRIM43BA6NCK2 446 aa10.29□□□□□ -0.76
CD44-232ENST00000531118 ALDH1L1O75891 902 aa10.29□□□□□ -0.76
CD44-232ENST00000531118 MAP2K5Q13163 448 aa10.29□□□□□ -0.76
CD44-232ENST00000531118 MTMR2Q13614 643 aa10.29□□□□□ -0.76
CD44-232ENST00000531118 MFSD14CQ5VZR4 134 aa10.29□□□□□ -0.76
CD44-232ENST00000531118 SH3RF1Q7Z6J0 888 aa10.29□□□□□ -0.76
CD44-232ENST00000531118 PLEKHH3Q7Z736 793 aa10.29□□□□□ -0.76
CD44-232ENST00000531118 KLHDC4Q8TBB5 520 aa10.29□□□□□ -0.76
CD44-232ENST00000531118 PPM1EQ8WY54 764 aa10.29□□□□□ -0.76
CD44-232ENST00000531118 TRIM43Q96BQ3 446 aaPredicted RBP10.29□□□□□ -0.76
CD44-232ENST00000531118 GAS2L1Q99501 681 aaPredicted RBP10.29□□□□□ -0.76
CD44-232ENST00000531118 C1QTNF1Q9BXJ1 281 aa10.29□□□□□ -0.76
CD44-232ENST00000531118 A0A0G2JMZ2 1700 aa10.29□□□□□ -0.76
CD44-232ENST00000531118 LRRC37A2A6NM11 1700 aa10.29□□□□□ -0.76
CD44-232ENST00000531118 KBTBD13C9JR72 458 aa10.28□□□□□ -0.76
CD44-232ENST00000531118 HOXA7P31268 230 aaPredicted RBP10.28□□□□□ -0.76
CD44-232ENST00000531118 BTDP43251 543 aa10.28□□□□□ -0.76
CD44-232ENST00000531118 EPHB4P54760 987 aa10.28□□□□□ -0.76
CD44-232ENST00000531118 MRPS5P82675 430 aaKnown RBP10.28□□□□□ -0.76
CD44-232ENST00000531118 RRP1BQ14684 758 aaKnown RBP10.28□□□□□ -0.76
CD44-232ENST00000531118 AKNAD1Q5T1N1 836 aa10.28□□□□□ -0.76
CD44-232ENST00000531118 GJC2Q5T442 439 aaPredicted RBP10.28□□□□□ -0.76
CD44-232ENST00000531118 POTEEQ6S8J3 1075 aa10.28□□□□□ -0.76
CD44-232ENST00000531118 SLC39A5Q6ZMH5 540 aa10.28□□□□□ -0.76
CD44-232ENST00000531118 IL27Q8NEV9 243 aa10.28□□□□□ -0.76
CD44-232ENST00000531118 GTF3C2Q8WUA4 911 aaPredicted RBP10.28□□□□□ -0.76
CD44-232ENST00000531118 TIFAQ96CG3 184 aa10.28□□□□□ -0.76
CD44-232ENST00000531118 P2RX7Q99572 595 aaKnown RBP10.28□□□□□ -0.76
CD44-232ENST00000531118 PAGR1Q9BTK6 254 aa10.28□□□□□ -0.76
CD44-232ENST00000531118 ZNF576Q9H609 170 aa10.28□□□□□ -0.76
CD44-232ENST00000531118 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.28□□□□□ -0.76
CD44-232ENST00000531118 AS3MTQ9HBK9 375 aa10.28□□□□□ -0.76
CD44-232ENST00000531118 USP17L5A8MUK1 530 aa10.27□□□□□ -0.77
CD44-232ENST00000531118 NBPF7P0C2Y1 421 aaPredicted RBP10.27□□□□□ -0.77
CD44-232ENST00000531118 CYBAP13498 195 aa10.27□□□□□ -0.77
CD44-232ENST00000531118 CNGA1P29973 690 aa10.27□□□□□ -0.77
CD44-232ENST00000531118 CAP2P40123 477 aa10.27□□□□□ -0.77
CD44-232ENST00000531118 EMP3P54852 163 aa10.27□□□□□ -0.77
CD44-232ENST00000531118 Q3C1V9 767 aa10.27□□□□□ -0.77
CD44-232ENST00000531118 DZIP1Q86YF9 867 aaKnown RBP10.27□□□□□ -0.77
CD44-232ENST00000531118 CCAR1Q8IX12 1150 aaKnown RBP10.27□□□□□ -0.77
CD44-232ENST00000531118 TRPV1Q8NER1 839 aa10.27□□□□□ -0.77
CD44-232ENST00000531118 LPIN2Q92539 896 aa10.27□□□□□ -0.77
CD44-232ENST00000531118 NECAB3Q96P71 396 aaPredicted RBP10.27□□□□□ -0.77
CD44-232ENST00000531118 SRCIN1Q9C0H9 1055 aa10.27□□□□□ -0.77
CD44-232ENST00000531118 CWC22Q9HCG8 908 aaKnown RBP10.27□□□□□ -0.77
CD44-232ENST00000531118 TMOD4Q9NZQ9 345 aa10.27□□□□□ -0.77
CD44-232ENST00000531118 RBPJLQ9UBG7 517 aa10.27□□□□□ -0.77
CD44-232ENST00000531118 MROH7-TTC4A0A0A0MT08 1334 aa10.27□□□□□ -0.77
CD44-232ENST00000531118 SEMA3EO15041 775 aa10.26□□□□□ -0.77
CD44-232ENST00000531118 ITGB8P26012 769 aa10.26□□□□□ -0.77
CD44-232ENST00000531118 LCE2DQ5TA82 110 aaPredicted RBP10.26□□□□□ -0.77
CD44-232ENST00000531118 SMYD5Q6GMV2 418 aa10.26□□□□□ -0.77
CD44-232ENST00000531118 SLC4A10Q6U841 1118 aa10.26□□□□□ -0.77
CD44-232ENST00000531118 IL16Q14005 1332 aa10.26□□□□□ -0.77
CD44-232ENST00000531118 CHD9Q3L8U1 2897 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.25□□□□□ -0.77
CD44-232ENST00000531118 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.25□□□□□ -0.77
CD44-232ENST00000531118 TULP1O00294 542 aaPredicted RBP10.25□□□□□ -0.77
CD44-232ENST00000531118 VAMP4O75379 141 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 CNMDO75829 334 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 CLTBP09497 229 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 CYP2C19P33261 490 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 BACE1P56817 501 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 RHBDL3P58872 404 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 FPGSQ05932 587 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 C1orf53Q5VUE5 145 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 ZGPATQ8N5A5 531 aaKnown RBP10.25□□□□□ -0.77
CD44-232ENST00000531118 EDC3Q96F86 508 aaKnown RBP10.25□□□□□ -0.77
CD44-232ENST00000531118 LRFN3Q9BTN0 628 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 WDR18Q9BV38 432 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 PRDM12Q9H4Q4 367 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 DENND2AQ9ULE3 1009 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 LHX6Q9UPM6 363 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 NDUFB9Q9Y6M9 179 aa10.25□□□□□ -0.77
CD44-232ENST00000531118 SMCHD1A6NHR9 2005 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms