RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 ZYXQ15942 572 aaKnown RBP17.48■□□□□ 0.39
CPSF1-201ENST00000526271 CCDC158Q5M9N0 1113 aa17.48■□□□□ 0.39
CPSF1-201ENST00000526271 TRPV1Q8NER1 839 aa17.48■□□□□ 0.39
CPSF1-201ENST00000526271 SMIM22K7EJ46 135 aa17.47■□□□□ 0.39
CPSF1-201ENST00000526271 KIAA1755Q5JYT7 1200 aa17.47■□□□□ 0.39
CPSF1-201ENST00000526271 ZKSCAN2Q63HK3 967 aa17.47■□□□□ 0.39
CPSF1-201ENST00000526271 USP17L2Q6R6M4 530 aa17.47■□□□□ 0.39
CPSF1-201ENST00000526271 CATSPERGQ6ZRH7 1159 aa17.47■□□□□ 0.39
CPSF1-201ENST00000526271 PLEKHH3Q7Z736 793 aa17.47■□□□□ 0.39
CPSF1-201ENST00000526271 CRACR2BQ8N4Y2 399 aaPredicted RBP17.47■□□□□ 0.39
CPSF1-201ENST00000526271 MAGEB6Q8N7X4 407 aa17.47■□□□□ 0.39
CPSF1-201ENST00000526271 SOCS4Q8WXH5 440 aa17.47■□□□□ 0.39
CPSF1-201ENST00000526271 GINM1Q9NU53 330 aa17.47■□□□□ 0.39
CPSF1-201ENST00000526271 CDH23Q9H251 3354 aa17.46■□□□□ 0.39
CPSF1-201ENST00000526271 A0A1W2PRG0 241 aa17.46■□□□□ 0.39
CPSF1-201ENST00000526271 ZKSCAN1P17029 563 aaPredicted RBP17.46■□□□□ 0.39
CPSF1-201ENST00000526271 VCAM1P19320 739 aa17.46■□□□□ 0.39
CPSF1-201ENST00000526271 MAPK4P31152 587 aa17.46■□□□□ 0.39
CPSF1-201ENST00000526271 GABPAQ06546 454 aa17.46■□□□□ 0.39
CPSF1-201ENST00000526271 CEP85Q6P2H3 762 aa17.46■□□□□ 0.39
CPSF1-201ENST00000526271 NPLOC4Q8TAT6 608 aa17.46■□□□□ 0.39
CPSF1-201ENST00000526271 NOL10Q9BSC4 688 aaKnown RBP17.46■□□□□ 0.39
CPSF1-201ENST00000526271 EHD4Q9H223 541 aa17.46■□□□□ 0.39
CPSF1-201ENST00000526271 ZNF236Q9UL36 1845 aa17.46■□□□□ 0.39
CPSF1-201ENST00000526271 VCANP13611 3396 aa17.45■□□□□ 0.38
CPSF1-201ENST00000526271 IDH1O75874 414 aaKnown RBP17.45■□□□□ 0.38
CPSF1-201ENST00000526271 LRIT3Q3SXY7 679 aa17.45■□□□□ 0.38
CPSF1-201ENST00000526271 APBA2Q99767 749 aa17.45■□□□□ 0.38
CPSF1-201ENST00000526271 BAZ2AQ9UIF9 1905 aaKnown RBP17.45■□□□□ 0.38
CPSF1-201ENST00000526271 SPDYE16A6NNV3 312 aaPredicted RBP17.44■□□□□ 0.38
CPSF1-201ENST00000526271 RGS2P41220 211 aa17.44■□□□□ 0.38
CPSF1-201ENST00000526271 MAP2K5Q13163 448 aa17.44■□□□□ 0.38
CPSF1-201ENST00000526271 OS9Q13438 667 aaPredicted RBP17.44■□□□□ 0.38
CPSF1-201ENST00000526271 SLFNL1Q499Z3 407 aa17.44■□□□□ 0.38
CPSF1-201ENST00000526271 LBX2Q6XYB7 198 aa17.44■□□□□ 0.38
CPSF1-201ENST00000526271 KIAA1683Q9H0B3 1180 aa17.44■□□□□ 0.38
CPSF1-201ENST00000526271 SERPINB13Q9UIV8 391 aa17.44■□□□□ 0.38
CPSF1-201ENST00000526271 EXOC6BQ9Y2D4 811 aa17.44■□□□□ 0.38
CPSF1-201ENST00000526271 RABGAP1Q9Y3P9 1069 aa17.44■□□□□ 0.38
CPSF1-201ENST00000526271 SMCHD1A6NHR9 2005 aa17.43■□□□□ 0.38
CPSF1-201ENST00000526271 ZNFX1Q9P2E3 1918 aaKnown RBP17.43■□□□□ 0.38
CPSF1-201ENST00000526271 COL11A1P12107 1806 aaPredicted RBP17.43■□□□□ 0.38
CPSF1-201ENST00000526271 CHGBP05060 677 aa17.43■□□□□ 0.38
CPSF1-201ENST00000526271 PTPREP23469 700 aa17.43■□□□□ 0.38
CPSF1-201ENST00000526271 SIAH1Q8IUQ4 282 aa17.43■□□□□ 0.38
CPSF1-201ENST00000526271 TDHQ8IZJ6 230 aa17.43■□□□□ 0.38
CPSF1-201ENST00000526271 SLC17A8Q8NDX2 589 aa17.43■□□□□ 0.38
CPSF1-201ENST00000526271 MTMR10Q9NXD2 777 aa17.43■□□□□ 0.38
CPSF1-201ENST00000526271 MYH8P13535 1937 aa17.43■□□□□ 0.38
CPSF1-201ENST00000526271 USP17L15C9J2P7 530 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 USP17L13C9JLJ4 530 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 USP17L11C9JVI0 530 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 USP17L18D6R9N7 530 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 USP17L22D6RA61 530 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 USP17L17D6RBQ6 530 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 USP17L19D6RCP7 530 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 USP17L20D6RJB6 530 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 DLL1O00548 723 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 IGSF3O75054 1194 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 HLA-DOAP06340 250 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 HOXC6P09630 235 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 CYP2D6P10635 497 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 USP17L24Q0WX57 530 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 GRB14Q14449 540 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 SEPT2Q15019 361 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 CLEC10AQ8IUN9 316 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 DEFB123Q8N688 67 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 SLC44A5Q8NCS7 719 aa17.42■□□□□ 0.38
CPSF1-201ENST00000526271 EDC3Q96F86 508 aaKnown RBP17.42■□□□□ 0.38
CPSF1-201ENST00000526271 SPTBN5Q9NRC6 3674 aaKnown RBP17.42■□□□□ 0.38
CPSF1-201ENST00000526271 PRUNE2Q8WUY3 3088 aa17.41■□□□□ 0.38
CPSF1-201ENST00000526271 TCRBV5S4A2TA0A5A2 114 aa17.41■□□□□ 0.38
CPSF1-201ENST00000526271 CYP2C19P33261 490 aa17.41■□□□□ 0.38
CPSF1-201ENST00000526271 USP5P45974 858 aa17.41■□□□□ 0.38
CPSF1-201ENST00000526271 MDM2Q00987 491 aaPredicted RBP17.41■□□□□ 0.38
CPSF1-201ENST00000526271 PDE3AQ14432 1141 aa17.41■□□□□ 0.38
CPSF1-201ENST00000526271 RAB3GAP1Q15042 981 aa17.41■□□□□ 0.38
CPSF1-201ENST00000526271 ABCB5Q2M3G0 1257 aa17.41■□□□□ 0.38
CPSF1-201ENST00000526271 GPR153Q6NV75 609 aa17.41■□□□□ 0.38
CPSF1-201ENST00000526271 RPAP3Q9H6T3 665 aaPredicted RBP17.41■□□□□ 0.38
CPSF1-201ENST00000526271 IL1RAPL2Q9NP60 686 aa17.41■□□□□ 0.38
CPSF1-201ENST00000526271 CERKLQ49MI3 558 aaPredicted RBP17.4■□□□□ 0.38
CPSF1-201ENST00000526271 ITPRIPQ8IWB1 547 aa17.4■□□□□ 0.38
CPSF1-201ENST00000526271 SIRT2Q8IXJ6 389 aa17.4■□□□□ 0.38
CPSF1-201ENST00000526271 TRMT44Q8IYL2 757 aaKnown RBP17.4■□□□□ 0.38
CPSF1-201ENST00000526271 PANK1Q8TE04 598 aa17.4■□□□□ 0.38
CPSF1-201ENST00000526271 GTF3C2Q8WUA4 911 aaPredicted RBP17.4■□□□□ 0.38
CPSF1-201ENST00000526271 TRIM34Q9BYJ4 488 aa17.4■□□□□ 0.38
CPSF1-201ENST00000526271 SLC15A5A6NIM6 579 aa17.39■□□□□ 0.37
CPSF1-201ENST00000526271 COBLO75128 1261 aa17.39■□□□□ 0.37
CPSF1-201ENST00000526271 CYBAP13498 195 aa17.39■□□□□ 0.37
CPSF1-201ENST00000526271 PDE6AP16499 860 aa17.39■□□□□ 0.37
CPSF1-201ENST00000526271 AACSQ86V21 672 aa17.39■□□□□ 0.37
CPSF1-201ENST00000526271 LCORLQ8N3X6 602 aa17.39■□□□□ 0.37
CPSF1-201ENST00000526271 SDR42E1Q8WUS8 393 aa17.39■□□□□ 0.37
CPSF1-201ENST00000526271 FEZ1Q99689 392 aa17.39■□□□□ 0.37
CPSF1-201ENST00000526271 UBE2OQ9C0C9 1292 aaKnown RBP17.39■□□□□ 0.37
CPSF1-201ENST00000526271 DDX20Q9UHI6 824 aaKnown RBP17.39■□□□□ 0.37
CPSF1-201ENST00000526271 DYNLL2Q96FJ2 89 aa17.38■□□□□ 0.37
CPSF1-201ENST00000526271 GUCD1Q96NT3 240 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms