RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 CDK8P49336 464 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 USP17L24Q0WX57 530 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 C16orf86Q6ZW13 317 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 ARMC5Q96C12 935 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 C12orf42Q96LP6 360 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 ARHGAP39Q9C0H5 1083 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 PTCH2Q9Y6C5 1203 aa19.48■□□□□ 0.71
LSM1-205ENST00000523511 GSG1L2A8MUP6 293 aa19.47■□□□□ 0.71
LSM1-205ENST00000523511 MINDY4BA8MYZ0 360 aa19.47■□□□□ 0.71
LSM1-205ENST00000523511 TRIM6-TRIM34B2RNG4 842 aa19.47■□□□□ 0.71
LSM1-205ENST00000523511 ECM2O94769 699 aaPredicted RBP19.47■□□□□ 0.71
LSM1-205ENST00000523511 CHGBP05060 677 aa19.47■□□□□ 0.71
LSM1-205ENST00000523511 SOX10P56693 466 aa19.47■□□□□ 0.71
LSM1-205ENST00000523511 NUCB1Q02818 461 aa19.47■□□□□ 0.71
LSM1-205ENST00000523511 SEPT2Q15019 361 aa19.47■□□□□ 0.71
LSM1-205ENST00000523511 GPRC5AQ8NFJ5 357 aa19.47■□□□□ 0.71
LSM1-205ENST00000523511 DYNLL2Q96FJ2 89 aa19.47■□□□□ 0.71
LSM1-205ENST00000523511 EMILIN3Q9NT22 766 aa19.47■□□□□ 0.71
LSM1-205ENST00000523511 MYPNQ86TC9 1320 aa19.47■□□□□ 0.71
LSM1-205ENST00000523511 SALL3Q9BXA9 1300 aa19.47■□□□□ 0.71
LSM1-205ENST00000523511 IGHDP01880 384 aa19.46■□□□□ 0.71
LSM1-205ENST00000523511 HERVK_113P62684 666 aa19.46■□□□□ 0.71
LSM1-205ENST00000523511 ZYXQ15942 572 aaKnown RBP19.46■□□□□ 0.71
LSM1-205ENST00000523511 ZMYM1Q5SVZ6 1142 aa19.46■□□□□ 0.71
LSM1-205ENST00000523511 ZNF444Q8N0Y2 327 aaPredicted RBP19.46■□□□□ 0.71
LSM1-205ENST00000523511 P2RX7Q99572 595 aaKnown RBP19.46■□□□□ 0.71
LSM1-205ENST00000523511 KANSL2Q9H9L4 492 aa19.46■□□□□ 0.71
LSM1-205ENST00000523511 UBXN2AP68543 259 aa19.45■□□□□ 0.7
LSM1-205ENST00000523511 SHROOM1Q2M3G4 852 aaPredicted RBP19.45■□□□□ 0.7
LSM1-205ENST00000523511 IFNL3Q8IZI9 196 aa19.45■□□□□ 0.7
LSM1-205ENST00000523511 NAPBQ9H115 298 aa19.45■□□□□ 0.7
LSM1-205ENST00000523511 HELLSQ9NRZ9 838 aa19.45■□□□□ 0.7
LSM1-205ENST00000523511 HOXC10Q9NYD6 342 aa19.45■□□□□ 0.7
LSM1-205ENST00000523511 BIN2Q9UBW5 565 aaPredicted RBP19.45■□□□□ 0.7
LSM1-205ENST00000523511 MYO5AQ9Y4I1 1855 aaKnown RBP19.45■□□□□ 0.7
LSM1-205ENST00000523511 GRK4P32298 578 aa19.44■□□□□ 0.7
LSM1-205ENST00000523511 CCNA1P78396 465 aa19.44■□□□□ 0.7
LSM1-205ENST00000523511 ICA1Q05084 483 aa19.44■□□□□ 0.7
LSM1-205ENST00000523511 PDE4BQ07343 736 aa19.44■□□□□ 0.7
LSM1-205ENST00000523511 SLC44A5Q8NCS7 719 aa19.44■□□□□ 0.7
LSM1-205ENST00000523511 SLAIN1Q8ND83 568 aa19.44■□□□□ 0.7
LSM1-205ENST00000523511 ACER1Q8TDN7 264 aa19.44■□□□□ 0.7
LSM1-205ENST00000523511 LPAR1Q92633 364 aa19.44■□□□□ 0.7
LSM1-205ENST00000523511 RILPL2Q969X0 211 aa19.44■□□□□ 0.7
LSM1-205ENST00000523511 CWC22Q9HCG8 908 aaKnown RBP19.44■□□□□ 0.7
LSM1-205ENST00000523511 MORF4L1Q9UBU8 362 aa19.44■□□□□ 0.7
LSM1-205ENST00000523511 FOCADQ5VW36 1801 aa19.44■□□□□ 0.7
LSM1-205ENST00000523511 CYP2D7A0A087X1C5 515 aa19.43■□□□□ 0.7
LSM1-205ENST00000523511 M0R2C6 588 aa19.43■□□□□ 0.7
LSM1-205ENST00000523511 MFAP1P55081 439 aaKnown RBP19.43■□□□□ 0.7
LSM1-205ENST00000523511 CATSPERGQ6ZRH7 1159 aa19.43■□□□□ 0.7
LSM1-205ENST00000523511 ZNF333Q96JL9 665 aa19.43■□□□□ 0.7
LSM1-205ENST00000523511 OSBPL3Q9H4L5 887 aa19.43■□□□□ 0.7
LSM1-205ENST00000523511 AKR1B1P15121 316 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 VCAM1P19320 739 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 MAPK4P31152 587 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 GUCY1A2P33402 732 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 CAP1Q01518 475 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 ATP2B2Q01814 1243 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 PRKCZQ05513 592 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 IRF5Q13568 498 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 COG2Q14746 738 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 MCMDC2Q4G0Z9 681 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 PPP4R3BQ5MIZ7 849 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 PXYLP1Q8TE99 480 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 TMX2Q9Y320 296 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 RABGAP1Q9Y3P9 1069 aa19.42■□□□□ 0.7
LSM1-205ENST00000523511 HIP1O00291 1037 aa19.41■□□□□ 0.7
LSM1-205ENST00000523511 CTGFP29279 349 aa19.41■□□□□ 0.7
LSM1-205ENST00000523511 FLT3LGP49771 235 aa19.41■□□□□ 0.7
LSM1-205ENST00000523511 RPAP3Q9H6T3 665 aaPredicted RBP19.41■□□□□ 0.7
LSM1-205ENST00000523511 GOPCQ9HD26 462 aa19.41■□□□□ 0.7
LSM1-205ENST00000523511 MYH1P12882 1939 aa19.41■□□□□ 0.7
LSM1-205ENST00000523511 CAPN2P17655 700 aa19.4■□□□□ 0.7
LSM1-205ENST00000523511 EVX2Q03828 476 aa19.4■□□□□ 0.7
LSM1-205ENST00000523511 PLEKHM2Q8IWE5 1019 aa19.4■□□□□ 0.7
LSM1-205ENST00000523511 NKX2-3Q8TAU0 364 aa19.4■□□□□ 0.7
LSM1-205ENST00000523511 SH3TC2Q8TF17 1288 aa19.4■□□□□ 0.7
LSM1-205ENST00000523511 SEC62Q99442 399 aaKnown RBP19.4■□□□□ 0.7
LSM1-205ENST00000523511 PAGR1Q9BTK6 254 aa19.4■□□□□ 0.7
LSM1-205ENST00000523511 ADCY3O60266 1144 aa19.39■□□□□ 0.69
LSM1-205ENST00000523511 ERVK-9P63128 1117 aa19.39■□□□□ 0.69
LSM1-205ENST00000523511 ERVK-24P63145 666 aa19.39■□□□□ 0.69
LSM1-205ENST00000523511 LBX2Q6XYB7 198 aa19.39■□□□□ 0.69
LSM1-205ENST00000523511 TANGO6Q9C0B7 1094 aa19.39■□□□□ 0.69
LSM1-205ENST00000523511 VCPKMTQ9H867 229 aa19.39■□□□□ 0.69
LSM1-205ENST00000523511 RBPJLQ9UBG7 517 aa19.39■□□□□ 0.69
LSM1-205ENST00000523511 A0A1W2PRG0 241 aa19.38■□□□□ 0.69
LSM1-205ENST00000523511 SIPA1L1O43166 1804 aa19.38■□□□□ 0.69
LSM1-205ENST00000523511 EEF2P13639 858 aaKnown RBP19.38■□□□□ 0.69
LSM1-205ENST00000523511 TRMT44Q8IYL2 757 aaKnown RBP19.38■□□□□ 0.69
LSM1-205ENST00000523511 STK11IPQ8N1F8 1099 aa19.38■□□□□ 0.69
LSM1-205ENST00000523511 MB21D1Q8N884 522 aa19.38■□□□□ 0.69
LSM1-205ENST00000523511 SOCS4Q8WXH5 440 aa19.38■□□□□ 0.69
LSM1-205ENST00000523511 CDK5RAP2Q96SN8 1893 aa19.38■□□□□ 0.69
LSM1-205ENST00000523511 NUDT12Q9BQG2 462 aa19.38■□□□□ 0.69
LSM1-205ENST00000523511 GABRQQ9UN88 632 aa19.38■□□□□ 0.69
LSM1-205ENST00000523511 PHIPQ8WWQ0 1821 aa19.37■□□□□ 0.69
LSM1-205ENST00000523511 ROBO3Q96MS0 1386 aa19.37■□□□□ 0.69
LSM1-205ENST00000523511 WDR46O15213 610 aaKnown RBP19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms