RNA–Protein interactions for RNA: ENST00000520561.1

CSMD1-208, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 4

Gene CSMD1, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-208ENST00000520561 NID2Q14112 1375 aa10.48□□□□□ -0.73
CSMD1-208ENST00000520561 IGKV6D-41A0A0C4DH26 115 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 DHX16O60231 1041 aaKnown RBP10.47□□□□□ -0.73
CSMD1-208ENST00000520561 PFKFB2O60825 505 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 TTLL1O95922 423 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 GH2P01242 217 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 SLURP2P0DP57 97 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 TOP1P11387 765 aaKnown RBP10.47□□□□□ -0.73
CSMD1-208ENST00000520561 PDIA3P30101 505 aaKnown RBP10.47□□□□□ -0.73
CSMD1-208ENST00000520561 MAP3K10Q02779 954 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 ICA1Q05084 483 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 CUL4AQ13619 759 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 CPLX2Q6PUV4 134 aaKnown RBP10.47□□□□□ -0.73
CSMD1-208ENST00000520561 USP48Q86UV5 1035 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 ZNF526Q8TF50 670 aaPredicted RBP10.47□□□□□ -0.73
CSMD1-208ENST00000520561 NUP133Q8WUM0 1156 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 ANKS1AQ92625 1134 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 INTS4Q96HW7 963 aaKnown RBP10.47□□□□□ -0.73
CSMD1-208ENST00000520561 RRAGCQ9HB90 399 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 SENP2Q9HC62 589 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 IL17RBQ9NRM6 502 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 GINM1Q9NU53 330 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 MTMR4Q9NYA4 1195 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 BRPF3Q9ULD4 1205 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 ZBTB21Q9ULJ3 1066 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 SSC5DA1L4H1 1573 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 DOCK1Q14185 1865 aa10.47□□□□□ -0.73
CSMD1-208ENST00000520561 CPLX1O14810 134 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 ASNSP08243 561 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 CAP2P40123 477 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 CCT2P78371 535 aaKnown RBP10.46□□□□□ -0.73
CSMD1-208ENST00000520561 ATP2B2Q01814 1243 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 SCRN1Q12765 414 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 RAB3GAP1Q15042 981 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 RTN1Q16799 776 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 RCSD1Q6JBY9 416 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 CDC37L1Q7L3B6 337 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 LDHDQ86WU2 507 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 RAB11FIP4Q86YS3 637 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 NECAB1Q8N987 351 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 SPRYD3Q8NCJ5 442 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 PNMA1Q8ND90 353 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 CTCFLQ8NI51 663 aaPredicted RBP10.46□□□□□ -0.73
CSMD1-208ENST00000520561 CDCA5Q96FF9 252 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 MYL10Q9BUA6 226 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.46□□□□□ -0.73
CSMD1-208ENST00000520561 KANSL2Q9H9L4 492 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 ARHGEF10LQ9HCE6 1279 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 FOXD4L1Q9NU39 408 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 SMC3Q9UQE7 1217 aa10.46□□□□□ -0.73
CSMD1-208ENST00000520561 ATAD5Q96QE3 1844 aa10.46□□□□□ -0.74
CSMD1-208ENST00000520561 CCDC196A0A1B0GTZ2 297 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 PPP1R12BO60237 982 aaPredicted RBP10.45□□□□□ -0.74
CSMD1-208ENST00000520561 CTNND1O60716 968 aaKnown RBP10.45□□□□□ -0.74
CSMD1-208ENST00000520561 CDKL5O76039 1030 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 RXRAP19793 462 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 NOVP48745 357 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 ST3GAL1Q11201 340 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 SEPT2Q15019 361 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 PPP2R5BQ15173 497 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 PRAMEF18Q5VWM3 479 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 CLEC10AQ8IUN9 316 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 CCDC144CPQ8IYA2 1237 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 LRRC47Q8N1G4 583 aaKnown RBP10.45□□□□□ -0.74
CSMD1-208ENST00000520561 WRNIP1Q96S55 665 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 TMEM47Q9BQJ4 181 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 GLIS2Q9BZE0 524 aaPredicted RBP10.45□□□□□ -0.74
CSMD1-208ENST00000520561 SH2D4AQ9H788 454 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 NMRK2Q9NPI5 230 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 PICK1Q9NRD5 415 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 RBM28Q9NW13 759 aaKnown RBP10.45□□□□□ -0.74
CSMD1-208ENST00000520561 NYAP2Q9P242 653 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 CLIP2Q9UDT6 1046 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 HPS5Q9UPZ3 1129 aa10.45□□□□□ -0.74
CSMD1-208ENST00000520561 PHF20L1A8MW92 1017 aa10.44□□□□□ -0.74
CSMD1-208ENST00000520561 EEF2P13639 858 aaKnown RBP10.44□□□□□ -0.74
CSMD1-208ENST00000520561 KIF5BP33176 963 aa10.44□□□□□ -0.74
CSMD1-208ENST00000520561 GUCY1A2P33402 732 aa10.44□□□□□ -0.74
CSMD1-208ENST00000520561 IREB2P48200 963 aaKnown RBP10.44□□□□□ -0.74
CSMD1-208ENST00000520561 HMGN5P82970 282 aaKnown RBP10.44□□□□□ -0.74
CSMD1-208ENST00000520561 TROAPQ12815 778 aa10.44□□□□□ -0.74
CSMD1-208ENST00000520561 RRP1BQ14684 758 aaKnown RBP10.44□□□□□ -0.74
CSMD1-208ENST00000520561 SHROOM1Q2M3G4 852 aaPredicted RBP10.44□□□□□ -0.74
CSMD1-208ENST00000520561 SCYL3Q8IZE3 742 aa10.44□□□□□ -0.74
CSMD1-208ENST00000520561 LLPHQ9BRT6 129 aaKnown RBP10.44□□□□□ -0.74
CSMD1-208ENST00000520561 NCOA5Q9HCD5 579 aaKnown RBP10.44□□□□□ -0.74
CSMD1-208ENST00000520561 CWC22Q9HCG8 908 aaKnown RBP10.44□□□□□ -0.74
CSMD1-208ENST00000520561 ZNF112Q9UJU3 913 aa10.44□□□□□ -0.74
CSMD1-208ENST00000520561 SYNPO2Q9UMS6 1093 aa10.44□□□□□ -0.74
CSMD1-208ENST00000520561 MTMR7Q9Y216 660 aa10.44□□□□□ -0.74
CSMD1-208ENST00000520561 KIF3AQ9Y496 699 aa10.44□□□□□ -0.74
CSMD1-208ENST00000520561 MYH4Q9Y623 1939 aa10.43□□□□□ -0.74
CSMD1-208ENST00000520561 PTPDC1A2A3K4 754 aa10.43□□□□□ -0.74
CSMD1-208ENST00000520561 POTEIP0CG38 1075 aa10.43□□□□□ -0.74
CSMD1-208ENST00000520561 POTEJP0CG39 1038 aa10.43□□□□□ -0.74
CSMD1-208ENST00000520561 INPP5BP32019 993 aa10.43□□□□□ -0.74
CSMD1-208ENST00000520561 GNAQP50148 359 aa10.43□□□□□ -0.74
CSMD1-208ENST00000520561 PRKG1Q13976 671 aa10.43□□□□□ -0.74
CSMD1-208ENST00000520561 TTLL12Q14166 644 aaPredicted RBP10.43□□□□□ -0.74
CSMD1-208ENST00000520561 GRM4Q14833 912 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms