RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 ANKRD30AQ9BXX3 1397 aa4.8□□□□□ -1.64
CPNE3-204ENST00000517862 FAM205AQ6ZU69 1335 aa4.8□□□□□ -1.64
CPNE3-204ENST00000517862 TM4SF1P30408 202 aa4.8□□□□□ -1.64
CPNE3-204ENST00000517862 SERPINB4P48594 390 aa4.8□□□□□ -1.64
CPNE3-204ENST00000517862 HIRAP54198 1017 aaPredicted RBP4.8□□□□□ -1.64
CPNE3-204ENST00000517862 NCOA4Q13772 614 aa4.8□□□□□ -1.64
CPNE3-204ENST00000517862 ELOAQ14241 798 aaKnown RBP4.8□□□□□ -1.64
CPNE3-204ENST00000517862 PDE3AQ14432 1141 aa4.8□□□□□ -1.64
CPNE3-204ENST00000517862 PRR23BQ6ZRT6 265 aa4.8□□□□□ -1.64
CPNE3-204ENST00000517862 ASCL5Q7RTU5 278 aa4.8□□□□□ -1.64
CPNE3-204ENST00000517862 KRT26Q7Z3Y9 468 aa4.8□□□□□ -1.64
CPNE3-204ENST00000517862 TMEFF1Q8IYR6 380 aa4.8□□□□□ -1.64
CPNE3-204ENST00000517862 U2AF1L4Q8WU68 220 aaKnown RBP4.8□□□□□ -1.64
CPNE3-204ENST00000517862 CHIC2Q9UKJ5 165 aa4.8□□□□□ -1.64
CPNE3-204ENST00000517862 COL4A6Q14031 1691 aa4.8□□□□□ -1.64
CPNE3-204ENST00000517862 PLXNA3P51805 1871 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 WDR87Q6ZQQ6 2873 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 ITGB4P16144 1822 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 FAM229AH3BQW9 127 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 CCL5P13501 91 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 ALADP13716 330 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 SMAD3P84022 425 aaKnown RBP4.79□□□□□ -1.64
CPNE3-204ENST00000517862 ADGRE1Q14246 886 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 MBTPS1Q14703 1052 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 CCDC93Q567U6 631 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 PRPF40BQ6NWY9 871 aaKnown RBP4.79□□□□□ -1.64
CPNE3-204ENST00000517862 ZCRB1Q8TBF4 217 aaKnown RBP4.79□□□□□ -1.64
CPNE3-204ENST00000517862 SPATA18Q8TC71 538 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 PAWRQ96IZ0 340 aaKnown RBP4.79□□□□□ -1.64
CPNE3-204ENST00000517862 MFSD14AQ96MC6 490 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 KCTD15Q96SI1 283 aaPredicted RBP4.79□□□□□ -1.64
CPNE3-204ENST00000517862 KRTAP9-3Q9BYQ3 159 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 CDV3Q9UKY7 258 aaKnown RBP4.79□□□□□ -1.64
CPNE3-204ENST00000517862 LRRC37A2A6NM11 1700 aa4.79□□□□□ -1.64
CPNE3-204ENST00000517862 RPGRIP1LQ68CZ1 1315 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 COL11A2P13942 1736 aaPredicted RBP4.78□□□□□ -1.64
CPNE3-204ENST00000517862 NRXN2Q9P2S2 1712 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 COL4A3Q01955 1670 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 ADM5C9JUS6 153 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 WASLO00401 505 aaPredicted RBP4.78□□□□□ -1.64
CPNE3-204ENST00000517862 RPS6KA4O75676 772 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 TFRCP02786 760 aaKnown RBP4.78□□□□□ -1.64
CPNE3-204ENST00000517862 RASA1P20936 1047 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 FGFR3P22607 806 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 GPC1P35052 558 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 POU4F2Q12837 409 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 TCF15Q12870 199 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 GRIK4Q16099 956 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 B4GALNT3Q6L9W6 998 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 ZBTB33Q86T24 672 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 ATOH1Q92858 354 aaPredicted RBP4.78□□□□□ -1.64
CPNE3-204ENST00000517862 CNKSR1Q969H4 720 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 ZNF594Q96JF6 807 aaPredicted RBP4.78□□□□□ -1.64
CPNE3-204ENST00000517862 PRRX2Q99811 253 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 OCSTAMPQ9BR26 566 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 ARHGAP9Q9BRR9 750 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 CD320Q9NPF0 282 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 TIMMDC1Q9NPL8 285 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 SRPK3Q9UPE1 567 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 PCDHB9Q9Y5E1 797 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 CEP250Q9BV73 2442 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 CARMIL3Q8ND23 1372 aa4.78□□□□□ -1.64
CPNE3-204ENST00000517862 ANKRD31Q8N7Z5 1873 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 USP42Q9H9J4 1324 aaKnown RBP4.77□□□□□ -1.65
CPNE3-204ENST00000517862 FAM196BA6NMK8 535 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 B8ZZF3 427 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 SGPL1O95470 568 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 SERPINB2P05120 415 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 ADH6P28332 368 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 PDE6BP35913 854 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 EIF5P55010 431 aaKnown RBP4.77□□□□□ -1.65
CPNE3-204ENST00000517862 PTK7Q13308 1070 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 SLFNL1Q499Z3 407 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 HFE2Q6ZVN8 426 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 NECAB2Q7Z6G3 386 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 PLEKHM2Q8IWE5 1019 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 NFATC2IPQ8NCF5 419 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 GPKOWQ92917 476 aaPredicted RBP eCLIP4.77□□□□□ -1.65
CPNE3-204ENST00000517862 NUDT16Q96DE0 195 aaKnown RBP4.77□□□□□ -1.65
CPNE3-204ENST00000517862 ARFGEF2Q9Y6D5 1785 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 SPEGQ15772 3267 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 SSC5DA1L4H1 1573 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 RAB3GAP2Q9H2M9 1393 aa4.77□□□□□ -1.65
CPNE3-204ENST00000517862 PRR23AA6NEV1 266 aa4.76□□□□□ -1.65
CPNE3-204ENST00000517862 LGR5O75473 907 aa4.76□□□□□ -1.65
CPNE3-204ENST00000517862 IGFBP4P22692 258 aa4.76□□□□□ -1.65
CPNE3-204ENST00000517862 ATP2B4P23634 1241 aa4.76□□□□□ -1.65
CPNE3-204ENST00000517862 NRG1Q02297 640 aaPredicted RBP4.76□□□□□ -1.65
CPNE3-204ENST00000517862 DMWDQ09019 674 aa4.76□□□□□ -1.65
CPNE3-204ENST00000517862 DPYDQ12882 1025 aa4.76□□□□□ -1.65
CPNE3-204ENST00000517862 PUM1Q14671 1186 aaKnown RBP eCLIP4.76□□□□□ -1.65
CPNE3-204ENST00000517862 TSGA10IPQ3SY00 556 aa4.76□□□□□ -1.65
CPNE3-204ENST00000517862 FAM117BQ6P1L5 589 aa4.76□□□□□ -1.65
CPNE3-204ENST00000517862 DNAJC14Q6Y2X3 702 aaPredicted RBP4.76□□□□□ -1.65
CPNE3-204ENST00000517862 SH3BP5LQ7L8J4 393 aa4.76□□□□□ -1.65
CPNE3-204ENST00000517862 PLPP7Q8NBV4 271 aa4.76□□□□□ -1.65
CPNE3-204ENST00000517862 FAM200AQ8TCP9 573 aa4.76□□□□□ -1.65
CPNE3-204ENST00000517862 SLC10A4Q96EP9 437 aa4.76□□□□□ -1.65
CPNE3-204ENST00000517862 LBHD1Q9BQE6 289 aaPredicted RBP4.76□□□□□ -1.65
CPNE3-204ENST00000517862 CEP126Q9P2H0 1117 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms