RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 USP17L11C9JVI0 530 aa21.07■□□□□ 0.96
DDX41-217ENST00000515562 USP17L18D6R9N7 530 aa21.07■□□□□ 0.96
DDX41-217ENST00000515562 USP17L22D6RA61 530 aa21.07■□□□□ 0.96
DDX41-217ENST00000515562 USP17L17D6RBQ6 530 aa21.07■□□□□ 0.96
DDX41-217ENST00000515562 USP17L19D6RCP7 530 aa21.07■□□□□ 0.96
DDX41-217ENST00000515562 USP17L20D6RJB6 530 aa21.07■□□□□ 0.96
DDX41-217ENST00000515562 CAPN2P17655 700 aa21.07■□□□□ 0.96
DDX41-217ENST00000515562 USP17L24Q0WX57 530 aa21.07■□□□□ 0.96
DDX41-217ENST00000515562 U2AF1L4Q8WU68 220 aaKnown RBP21.07■□□□□ 0.96
DDX41-217ENST00000515562 SOCS4Q8WXH5 440 aa21.07■□□□□ 0.96
DDX41-217ENST00000515562 TXNRD2Q9NNW7 524 aa21.07■□□□□ 0.96
DDX41-217ENST00000515562 BAZ2AQ9UIF9 1905 aaKnown RBP21.06■□□□□ 0.96
DDX41-217ENST00000515562 MPHOSPH10O00566 681 aaKnown RBP21.06■□□□□ 0.96
DDX41-217ENST00000515562 HMGCRP04035 888 aa21.06■□□□□ 0.96
DDX41-217ENST00000515562 VCAM1P19320 739 aa21.06■□□□□ 0.96
DDX41-217ENST00000515562 MAPK4P31152 587 aa21.06■□□□□ 0.96
DDX41-217ENST00000515562 ERVK-9P63128 1117 aa21.06■□□□□ 0.96
DDX41-217ENST00000515562 ERVK-24P63145 666 aa21.06■□□□□ 0.96
DDX41-217ENST00000515562 SEPT2Q15019 361 aa21.06■□□□□ 0.96
DDX41-217ENST00000515562 SLFNL1Q499Z3 407 aa21.06■□□□□ 0.96
DDX41-217ENST00000515562 RBPJLQ9UBG7 517 aa21.06■□□□□ 0.96
DDX41-217ENST00000515562 CYP2D6P10635 497 aa21.05■□□□□ 0.96
DDX41-217ENST00000515562 GUCY1A2P33402 732 aa21.05■□□□□ 0.96
DDX41-217ENST00000515562 TMEM179Q6ZVK1 233 aa21.05■□□□□ 0.96
DDX41-217ENST00000515562 CCAR1Q8IX12 1150 aaKnown RBP21.05■□□□□ 0.96
DDX41-217ENST00000515562 ACER1Q8TDN7 264 aa21.05■□□□□ 0.96
DDX41-217ENST00000515562 PAGR1Q9BTK6 254 aa21.05■□□□□ 0.96
DDX41-217ENST00000515562 PAK6Q9NQU5 681 aaPredicted RBP21.05■□□□□ 0.96
DDX41-217ENST00000515562 GJD2Q9UKL4 321 aa21.05■□□□□ 0.96
DDX41-217ENST00000515562 PLXNB2O15031 1838 aa21.05■□□□□ 0.96
DDX41-217ENST00000515562 PRKAB2O43741 272 aa21.04■□□□□ 0.96
DDX41-217ENST00000515562 SGPL1O95470 568 aa21.04■□□□□ 0.96
DDX41-217ENST00000515562 RRP1P56182 461 aaKnown RBP21.04■□□□□ 0.96
DDX41-217ENST00000515562 EVX2Q03828 476 aa21.04■□□□□ 0.96
DDX41-217ENST00000515562 SLC44A5Q8NCS7 719 aa21.04■□□□□ 0.96
DDX41-217ENST00000515562 NUDT12Q9BQG2 462 aa21.04■□□□□ 0.96
DDX41-217ENST00000515562 RABGAP1Q9Y3P9 1069 aa21.04■□□□□ 0.96
DDX41-217ENST00000515562 CCNA1P78396 465 aa21.03■□□□□ 0.96
DDX41-217ENST00000515562 CATSPERGQ6ZRH7 1159 aa21.03■□□□□ 0.96
DDX41-217ENST00000515562 UBE2Q1Q7Z7E8 422 aa21.03■□□□□ 0.96
DDX41-217ENST00000515562 KBTBD3Q8NAB2 608 aa21.03■□□□□ 0.96
DDX41-217ENST00000515562 SLC4A4Q9Y6R1 1079 aa21.03■□□□□ 0.96
DDX41-217ENST00000515562 PEX10O60683 326 aa21.02■□□□□ 0.96
DDX41-217ENST00000515562 FARP2O94887 1054 aaPredicted RBP21.02■□□□□ 0.96
DDX41-217ENST00000515562 CHGBP05060 677 aa21.02■□□□□ 0.96
DDX41-217ENST00000515562 XRCC5P13010 732 aaKnown RBP21.02■□□□□ 0.96
DDX41-217ENST00000515562 C12orf60Q5U649 245 aa21.02■□□□□ 0.96
DDX41-217ENST00000515562 LBX2Q6XYB7 198 aa21.02■□□□□ 0.96
DDX41-217ENST00000515562 CCDC17Q96LX7 622 aa21.02■□□□□ 0.96
DDX41-217ENST00000515562 DEFB118Q96PH6 123 aa21.02■□□□□ 0.96
DDX41-217ENST00000515562 HTATIP2Q9BUP3 242 aa21.02■□□□□ 0.96
DDX41-217ENST00000515562 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.02■□□□□ 0.961e-5■■■□□ 18
DDX41-217ENST00000515562 PUS7LQ9H0K6 701 aaKnown RBP21.02■□□□□ 0.96
DDX41-217ENST00000515562 RPAP3Q9H6T3 665 aaPredicted RBP21.02■□□□□ 0.96
DDX41-217ENST00000515562 ARPP21Q9UBL0 812 aaPredicted RBP21.02■□□□□ 0.96
DDX41-217ENST00000515562 USP17L12C9JPN9 530 aa21.01■□□□□ 0.95
DDX41-217ENST00000515562 USP17L21D6R901 530 aa21.01■□□□□ 0.95
DDX41-217ENST00000515562 ZFYP08048 801 aaPredicted RBP21.01■□□□□ 0.95
DDX41-217ENST00000515562 GPR142Q7Z601 462 aa21.01■□□□□ 0.95
DDX41-217ENST00000515562 TRMT44Q8IYL2 757 aaKnown RBP21.01■□□□□ 0.95
DDX41-217ENST00000515562 DYNLL2Q96FJ2 89 aa21.01■□□□□ 0.95
DDX41-217ENST00000515562 PORCNQ9H237 461 aa21.01■□□□□ 0.95
DDX41-217ENST00000515562 SH2D4AQ9H788 454 aa21.01■□□□□ 0.95
DDX41-217ENST00000515562 ARHGEF10LQ9HCE6 1279 aa21.01■□□□□ 0.95
DDX41-217ENST00000515562 CWC22Q9HCG8 908 aaKnown RBP21.01■□□□□ 0.95
DDX41-217ENST00000515562 PCDHB15Q9Y5E8 787 aa21.01■□□□□ 0.95
DDX41-217ENST00000515562 TTC41PQ6P2S7 1318 aa21.01■□□□□ 0.95
DDX41-217ENST00000515562 A0A1W2PRG0 241 aa21■□□□□ 0.95
DDX41-217ENST00000515562 CYP2B6P20813 491 aa21■□□□□ 0.95
DDX41-217ENST00000515562 ICA1Q05084 483 aa21■□□□□ 0.95
DDX41-217ENST00000515562 LRRFIP1Q32MZ4 808 aaKnown RBP21■□□□□ 0.95
DDX41-217ENST00000515562 Q3C1V9 767 aa21■□□□□ 0.95
DDX41-217ENST00000515562 POTEEQ6S8J3 1075 aa21■□□□□ 0.95
DDX41-217ENST00000515562 C16orf86Q6ZW13 317 aa21■□□□□ 0.95
DDX41-217ENST00000515562 PLEKHH3Q7Z736 793 aa21■□□□□ 0.95
DDX41-217ENST00000515562 TRIB2Q92519 343 aa21■□□□□ 0.95
DDX41-217ENST00000515562 APPBP2Q92624 585 aa21■□□□□ 0.95
DDX41-217ENST00000515562 LPAR1Q92633 364 aa21■□□□□ 0.95
DDX41-217ENST00000515562 RPTORQ8N122 1335 aa21■□□□□ 0.95
DDX41-217ENST00000515562 SPDYE16A6NNV3 312 aaPredicted RBP20.99■□□□□ 0.95
DDX41-217ENST00000515562 ERC2O15083 957 aa20.99■□□□□ 0.95
DDX41-217ENST00000515562 GLRX3O76003 335 aaKnown RBP20.99■□□□□ 0.95
DDX41-217ENST00000515562 TFRCP02786 760 aaKnown RBP20.99■□□□□ 0.95
DDX41-217ENST00000515562 AKR1B1P15121 316 aa20.99■□□□□ 0.95
DDX41-217ENST00000515562 RGS2P41220 211 aa20.99■□□□□ 0.95
DDX41-217ENST00000515562 CDK8P49336 464 aa20.99■□□□□ 0.95
DDX41-217ENST00000515562 TSHZ3Q63HK5 1081 aa20.99■□□□□ 0.95
DDX41-217ENST00000515562 STRBPQ96SI9 672 aaKnown RBP20.99■□□□□ 0.95
DDX41-217ENST00000515562 APBA2Q99767 749 aa20.99■□□□□ 0.95
DDX41-217ENST00000515562 CRISPLD2Q9H0B8 497 aa20.99■□□□□ 0.95
DDX41-217ENST00000515562 HMX1Q9NP08 348 aaPredicted RBP20.99■□□□□ 0.95
DDX41-217ENST00000515562 A0A0G2JMZ2 1700 aa20.98■□□□□ 0.95
DDX41-217ENST00000515562 CYP2D7A0A087X1C5 515 aa20.98■□□□□ 0.95
DDX41-217ENST00000515562 CNMDO75829 334 aa20.98■□□□□ 0.95
DDX41-217ENST00000515562 ZKSCAN1P17029 563 aaPredicted RBP20.98■□□□□ 0.95
DDX41-217ENST00000515562 GIMAP6Q6P9H5 292 aa20.98■□□□□ 0.95
DDX41-217ENST00000515562 CTR9Q6PD62 1173 aa20.98■□□□□ 0.95
DDX41-217ENST00000515562 USP6NLQ92738 828 aa20.98■□□□□ 0.95
DDX41-217ENST00000515562 TANGO6Q9C0B7 1094 aa20.98■□□□□ 0.95
DDX41-217ENST00000515562 RNF113AO15541 343 aaKnown RBP20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms