RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MYH8P13535 1937 aa16.93■□□□□ 0.3
NUP54-216ENST00000514901 PHIPQ8WWQ0 1821 aa16.93■□□□□ 0.3
NUP54-216ENST00000514901 ORC4O43929 436 aa16.92■□□□□ 0.3
NUP54-216ENST00000514901 CTDSPL2Q05D32 466 aa16.92■□□□□ 0.3
NUP54-216ENST00000514901 MOGSQ13724 837 aa16.92■□□□□ 0.3
NUP54-216ENST00000514901 PPP4R3BQ5MIZ7 849 aa16.92■□□□□ 0.3
NUP54-216ENST00000514901 GADL1Q6ZQY3 521 aa16.92■□□□□ 0.3
NUP54-216ENST00000514901 MFSD6Q6ZSS7 791 aa16.92■□□□□ 0.3
NUP54-216ENST00000514901 KIAA1683Q9H0B3 1180 aa16.92■□□□□ 0.3
NUP54-216ENST00000514901 ARHGEF10LQ9HCE6 1279 aa16.92■□□□□ 0.3
NUP54-216ENST00000514901 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.92■□□□□ 0.3
NUP54-216ENST00000514901 U3KPZ7 1027 aaPredicted RBP16.92■□□□□ 0.3
NUP54-216ENST00000514901 FOXN1O15353 648 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 PRDM1O75626 825 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 TSPY3P0CV98 308 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 TSPY8P0CW00 308 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 HMGCS2P54868 508 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 PABPC4Q13310 644 aaKnown RBP eCLIP16.91■□□□□ 0.3
NUP54-216ENST00000514901 MTMR2Q13614 643 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 NOM1Q5C9Z4 860 aaKnown RBP16.91■□□□□ 0.3
NUP54-216ENST00000514901 AKNAD1Q5T1N1 836 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 FAM43AQ8N2R8 423 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 NEDD1Q8NHV4 660 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 STAG1Q8WVM7 1258 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 MAP4K1Q92918 833 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 FEZ1Q99689 392 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 SH2D4AQ9H788 454 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 ZFYVE28Q9HCC9 887 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 AGTPBP1Q9UPW5 1226 aa16.91■□□□□ 0.3
NUP54-216ENST00000514901 PDHXO00330 501 aa16.9■□□□□ 0.3
NUP54-216ENST00000514901 HAND2P61296 217 aa16.9■□□□□ 0.3
NUP54-216ENST00000514901 TFAP4Q01664 338 aa16.9■□□□□ 0.3
NUP54-216ENST00000514901 PTH1RQ03431 593 aa16.9■□□□□ 0.3
NUP54-216ENST00000514901 ICA1Q05084 483 aa16.9■□□□□ 0.3
NUP54-216ENST00000514901 GPAT2Q6NUI2 795 aa16.9■□□□□ 0.3
NUP54-216ENST00000514901 RANBP6O60518 1105 aaKnown RBP16.89■□□□□ 0.29
NUP54-216ENST00000514901 TAF1CQ15572 869 aaPredicted RBP16.89■□□□□ 0.29
NUP54-216ENST00000514901 ACER1Q8TDN7 264 aa16.89■□□□□ 0.29
NUP54-216ENST00000514901 C12orf42Q96LP6 360 aa16.89■□□□□ 0.29
NUP54-216ENST00000514901 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.89■□□□□ 0.29
NUP54-216ENST00000514901 TOMM22Q9NS69 142 aa16.89■□□□□ 0.29
NUP54-216ENST00000514901 NYAP2Q9P242 653 aa16.89■□□□□ 0.29
NUP54-216ENST00000514901 PNMA3Q9UL41 463 aa16.89■□□□□ 0.29
NUP54-216ENST00000514901 PLIN4Q96Q06 1357 aa16.89■□□□□ 0.29
NUP54-216ENST00000514901 PTPRFP10586 1907 aa16.88■□□□□ 0.29
NUP54-216ENST00000514901 IGKV6D-41A0A0C4DH26 115 aa16.88■□□□□ 0.29
NUP54-216ENST00000514901 TSPY2A6NKD2 308 aa16.88■□□□□ 0.29
NUP54-216ENST00000514901 TBC1D8O95759 1140 aa16.88■□□□□ 0.29
NUP54-216ENST00000514901 HSPA8P11142 646 aaKnown RBP16.88■□□□□ 0.29
NUP54-216ENST00000514901 EEF2P13639 858 aaKnown RBP16.88■□□□□ 0.29
NUP54-216ENST00000514901 HOXA7P31268 230 aaPredicted RBP16.88■□□□□ 0.29
NUP54-216ENST00000514901 SIAH1Q8IUQ4 282 aa16.88■□□□□ 0.29
NUP54-216ENST00000514901 PARK7Q99497 189 aaKnown RBP16.88■□□□□ 0.29
NUP54-216ENST00000514901 LSG1Q9H089 658 aaKnown RBP16.88■□□□□ 0.29
NUP54-216ENST00000514901 PRDM10Q9NQV6 1147 aa16.88■□□□□ 0.29
NUP54-216ENST00000514901 EMILIN3Q9NT22 766 aa16.88■□□□□ 0.29
NUP54-216ENST00000514901 MTMR4Q9NYA4 1195 aa16.88■□□□□ 0.29
NUP54-216ENST00000514901 SYNPO2Q9UMS6 1093 aa16.88■□□□□ 0.29
NUP54-216ENST00000514901 TMX2Q9Y320 296 aa16.88■□□□□ 0.29
NUP54-216ENST00000514901 A0A1W2PRG0 241 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 TTLL1O95922 423 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 OSBPP22059 807 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 CRHR2Q13324 411 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 FAM47AQ5JRC9 791 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 LPAR1Q92633 364 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 ESR2Q92731 530 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 MKL1Q969V6 931 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 KRT23Q9C075 422 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 NBPF3Q9H094 633 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 CNNM2Q9H8M5 875 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 ANO2Q9NQ90 1003 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 INCENPQ9NQS7 918 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 TCP11L1Q9NUJ3 509 aa16.87■□□□□ 0.29
NUP54-216ENST00000514901 GPR25O00155 361 aa16.86■□□□□ 0.29
NUP54-216ENST00000514901 TLR2O60603 784 aa16.86■□□□□ 0.29
NUP54-216ENST00000514901 LBX1P52954 281 aa16.86■□□□□ 0.29
NUP54-216ENST00000514901 ATP2B2Q01814 1243 aa16.86■□□□□ 0.29
NUP54-216ENST00000514901 CCDC178Q5BJE1 867 aa16.86■□□□□ 0.29
NUP54-216ENST00000514901 RRP12Q5JTH9 1297 aaKnown RBP16.86■□□□□ 0.29
NUP54-216ENST00000514901 TREML2Q5T2D2 321 aa16.86■□□□□ 0.29
NUP54-216ENST00000514901 TBC1D10CQ8IV04 446 aa16.86■□□□□ 0.29
NUP54-216ENST00000514901 CEP95Q96GE4 821 aa16.86■□□□□ 0.29
NUP54-216ENST00000514901 GOPCQ9HD26 462 aa16.86■□□□□ 0.29
NUP54-216ENST00000514901 TSKSQ9UJT2 592 aa16.86■□□□□ 0.29
NUP54-216ENST00000514901 RBM8AQ9Y5S9 174 aaKnown RBP16.86■□□□□ 0.29
NUP54-216ENST00000514901 TACC3Q9Y6A5 838 aa16.86■□□□□ 0.29
NUP54-216ENST00000514901 USP17L15C9J2P7 530 aa16.85■□□□□ 0.29
NUP54-216ENST00000514901 USP17L13C9JLJ4 530 aa16.85■□□□□ 0.29
NUP54-216ENST00000514901 USP17L11C9JVI0 530 aa16.85■□□□□ 0.29
NUP54-216ENST00000514901 USP17L18D6R9N7 530 aa16.85■□□□□ 0.29
NUP54-216ENST00000514901 USP17L22D6RA61 530 aa16.85■□□□□ 0.29
NUP54-216ENST00000514901 USP17L17D6RBQ6 530 aa16.85■□□□□ 0.29
NUP54-216ENST00000514901 USP17L19D6RCP7 530 aa16.85■□□□□ 0.29
NUP54-216ENST00000514901 USP17L20D6RJB6 530 aa16.85■□□□□ 0.29
NUP54-216ENST00000514901 USP17L24Q0WX57 530 aa16.85■□□□□ 0.29
NUP54-216ENST00000514901 TRDNQ13061 729 aa16.85■□□□□ 0.29
NUP54-216ENST00000514901 ZYXQ15942 572 aaKnown RBP16.85■□□□□ 0.29
NUP54-216ENST00000514901 VCPKMTQ9H867 229 aa16.85■□□□□ 0.29
NUP54-216ENST00000514901 CLIP2Q9UDT6 1046 aa16.85■□□□□ 0.29
NUP54-216ENST00000514901 EIF5BO60841 1220 aaKnown RBP16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms