RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 IMMTQ16891 758 aaKnown RBP13.55□□□□□ -0.24
LIMCH1-210ENST00000509454 FASTKD5Q7L8L6 764 aaKnown RBP13.55□□□□□ -0.24
LIMCH1-210ENST00000509454 ANO2Q9NQ90 1003 aa13.55□□□□□ -0.24
LIMCH1-210ENST00000509454 INCENPQ9NQS7 918 aa13.55□□□□□ -0.24
LIMCH1-210ENST00000509454 CEP350Q5VT06 3117 aa13.55□□□□□ -0.24
LIMCH1-210ENST00000509454 ZMYM6O95789 1325 aa13.55□□□□□ -0.24
LIMCH1-210ENST00000509454 USP17L10C9JJH3 530 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 IGF2BP3O00425 579 aaKnown RBP eCLIP13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 CA12O43570 354 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 ALDH1A1P00352 501 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 PTH1RQ03431 593 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 FAM47AQ5JRC9 791 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 MFSD6Q6ZSS7 791 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 CLEC10AQ8IUN9 316 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 WDR18Q9BV38 432 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 ARHGEF10LQ9HCE6 1279 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 PHIPQ8WWQ0 1821 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 A0A0G2JLL6 359 aaPredicted RBP13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 TSPY2A6NKD2 308 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 BTBD19C9JJ37 291 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 FOXN1O15353 648 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 TBC1D8O95759 1140 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 GUCY1A2P33402 732 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 BACE1P56817 501 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 TFAP4Q01664 338 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 TAF1CQ15572 869 aaPredicted RBP13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 PRRT2Q7Z6L0 340 aaPredicted RBP13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 FAM43AQ8N2R8 423 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 PTPN18Q99952 460 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 RNF41Q9H4P4 317 aaPredicted RBP13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 ANAPC4Q9UJX5 808 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 GTF3C3Q9Y5Q9 886 aa13.54□□□□□ -0.24
LIMCH1-210ENST00000509454 TESPA1A2RU30 521 aaPredicted RBP13.53□□□□□ -0.24
LIMCH1-210ENST00000509454 C19orf81C9J6K1 198 aa13.53□□□□□ -0.24
LIMCH1-210ENST00000509454 PDHXO00330 501 aa13.53□□□□□ -0.24
LIMCH1-210ENST00000509454 CTCFP49711 727 aaPredicted RBP13.53□□□□□ -0.24
LIMCH1-210ENST00000509454 DGKZQ13574 1117 aa13.53□□□□□ -0.24
LIMCH1-210ENST00000509454 AKNAD1Q5T1N1 836 aa13.53□□□□□ -0.24
LIMCH1-210ENST00000509454 USP17L2Q6R6M4 530 aa13.53□□□□□ -0.24
LIMCH1-210ENST00000509454 TBC1D10CQ8IV04 446 aa13.53□□□□□ -0.24
LIMCH1-210ENST00000509454 ACER1Q8TDN7 264 aa13.53□□□□□ -0.24
LIMCH1-210ENST00000509454 KANSL2Q9H9L4 492 aa13.53□□□□□ -0.24
LIMCH1-210ENST00000509454 USP14P54578 494 aa13.52□□□□□ -0.25
LIMCH1-210ENST00000509454 ANKRD23Q86SG2 305 aa13.52□□□□□ -0.25
LIMCH1-210ENST00000509454 SH2D4AQ9H788 454 aa13.52□□□□□ -0.25
LIMCH1-210ENST00000509454 ZFYVE28Q9HCC9 887 aa13.52□□□□□ -0.25
LIMCH1-210ENST00000509454 SAGE1Q9NXZ1 904 aa13.52□□□□□ -0.25
LIMCH1-210ENST00000509454 RBM8AQ9Y5S9 174 aaKnown RBP13.52□□□□□ -0.25
LIMCH1-210ENST00000509454 EEF2P13639 858 aaKnown RBP13.51□□□□□ -0.25
LIMCH1-210ENST00000509454 TREML2Q5T2D2 321 aa13.51□□□□□ -0.25
LIMCH1-210ENST00000509454 PROCA1Q8NCQ7 364 aaPredicted RBP13.51□□□□□ -0.25
LIMCH1-210ENST00000509454 STAG1Q8WVM7 1258 aa13.51□□□□□ -0.25
LIMCH1-210ENST00000509454 AGTPBP1Q9UPW5 1226 aa13.51□□□□□ -0.25
LIMCH1-210ENST00000509454 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.51□□□□□ -0.25
LIMCH1-210ENST00000509454 ORC4O43929 436 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 HSPA8P11142 646 aaKnown RBP13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 OSBPP22059 807 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 LBX1P52954 281 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 IRX3P78415 501 aaPredicted RBP13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 PABPC4Q13310 644 aaKnown RBP eCLIP13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 CRHR2Q13324 411 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 NEDD1Q8NHV4 660 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 ESR2Q92731 530 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 PARK7Q99497 189 aaKnown RBP13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 LSG1Q9H089 658 aaKnown RBP13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 NBPF3Q9H094 633 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 KIAA1683Q9H0B3 1180 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 CLIP2Q9UDT6 1046 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 ISY1Q9ULR0 285 aaKnown RBP13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 TACC3Q9Y6A5 838 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 PTPRFP10586 1907 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 NEDD4P46934 1319 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 LAMA4Q16363 1823 aa13.5□□□□□ -0.25
LIMCH1-210ENST00000509454 A0A1W2PRG0 241 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 PCP11498 1178 aaKnown RBP13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 TRDNQ13061 729 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 MOGSQ13724 837 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 SH3D19Q5HYK7 790 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 GPAT2Q6NUI2 795 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 SPICE1Q8N0Z3 855 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 SMCR8Q8TEV9 937 aaPredicted RBP13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 MAP4K1Q92918 833 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 CEP95Q96GE4 821 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 GOPCQ9HD26 462 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 PNMA3Q9UL41 463 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 STX8Q9UNK0 236 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 B4E1Z4 1266 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 NMT2O60551 498 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 KDM4AO75164 1064 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 TTLL1O95922 423 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 CYP2C8P10632 490 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 PPP4R3BQ5MIZ7 849 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 LRRC47Q8N1G4 583 aaKnown RBP13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 CHMP4CQ96CF2 233 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 KRT23Q9C075 422 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 TANGO6Q9C0B7 1094 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 CNNM2Q9H8M5 875 aa13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 ZCCHC17Q9NP64 241 aaKnown RBP13.49□□□□□ -0.25
LIMCH1-210ENST00000509454 EMILIN3Q9NT22 766 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms